I am trying to recompute the surfaces after wm edits using this command line : recon-all -autorecon2-wm -hires -s subject_id , but when I do run that command, it starts at mri_normalization and not mri_filled which then gives me wm.mgz without the manual edits I've made.

FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0 (also tried with freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0)