Hi Doug,

Yes the quoted lines were output fromt her terminal.

ls -l brain.mgz
-rwxrwx--- 1 myuser myuser 1216430 May 18 17:06 brain.mgz

I have many Tb of disk space. I can chmod 777 the files and still seg faults.

Thanks
Josh



-
Joshua Lee, Ph.D.
Post-Doctoral Researcher
MIND Institute
University of California, Davis
530.747.3805

On Thu, Jun 2, 2016 at 12:13 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Can you send the full terminal output? Or is that it? Do you have enough
disc space or is it running out? what is the result of
ls -l brain.mgz



On 06/02/2016 03:07 PM, Joshua Lee wrote:
> On freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 installed on
> Ubuntu 16.04 LTS
> mri_convert is seg faulting
>
>
>     >>ls brain*
>     brain.finalsurfs.mgz brainmask.auto.mgz  brainmask.mgz  brain.mgz
>
>     mri_convert ./brain.mgz --in_type mgz --out_type nii -o ./brain.nii
>
>     $Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $
>     reading from ./brain.mgz...
>     Segmentation fault (core dumped)
>
>
> Any ideas?
>
> Thanks
>
> Joshua
>
>
>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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