Hello,

I used the command “recon-all -all -subjid $SUBJECTNAME”. There was no error for Freesurfer, but it was slow at certain time points with a lot of corrections (sometimes with large defects, our initial imaging was a 512*512*90 slices T1 axial imaging set).

The outputs for this were used in HCP workbench to downsample the size of the cortical sheet.

When I run the workbench script, it showed an error:

 

While running >>>>/workbench/sub-001.L.sulc.native.shape.gii CORTEX_LEFT

 

ERROR: NAME OF FILE: sub-002.L.sulc.native.shape.gii

PATH TO FILE: >>>>/sub-002/workbench File does not exist

I don’t think this is a problem with workbench but should be missing some components (cortical mesh) when the initial cortical sheet was made by Freesurfer.

 

I wonder if you have any ideas.

 

Thanks

 

Zhen