External Email - Use Caution

Dear Greve,

I would like to represent the r values (correlations calculated in Matlab) from specific subcortical regions (hippocampus, for example) in a subcortical segmentation (aseg.mgz), so I can load the aseg.mgz and visualise it using Freeview.

Shall I use MRIRead & MRIWrite to change the values in aseg.mgz? How can I do it?

Thank you and best regards,

Conchy

On Tue, Dec 11, 2018 at 4:18 PM Greve, Douglas N.,Ph.D. <DGREVE@mgh.harvard.edu> wrote:

not sure that you are trying to do. An annot is usually used for cortical segmentation, not subcortical

On 12/9/18 5:57 PM, Conchy PF wrote:
External Email - Use Caution

Hello FS experts,

I was wondering if there is a command similar to annotval2surfoverlay.m that allows converting subcortical values into aseg.annot subcortical segmentation.

Thank you in advance and kind regards,

Lisbeth
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer