I'm attempting to run thalamic segmentation using the following command: segmentThalamicNuclei.sh SUBJID. I've been able to run segmentation in the past. However, this time when I execute the command, I receive the following error: /home/bdl/freesurfer/subjects/SD027/scripts/IsRunningHPsubT1.lh+rh: No such file or directory.

I opened the scripts folder and did not find the "IsRunningHPsubT1.lh+rh." I've looked through the other subjects I've run segmentation of the thalamic nucleus for and they also didn't have this script. Yet for some reason I was able to run the segmentation. Is this a new feature? Do I need to rerun segmentation again? Please advise.

Best,

Katie

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