In the training that I attended in May, I believe it was demonstrated by Allison that you could fix multiple problems at the same time.   I understand how to make the edits at the same time, but am unsure what command to run to integrate all of these changes concurrently.

Since I currently do not know how to do this, it is taking me multiple days to fix some problems on subjects with multiple types of errors.  Currently I first manually delete some dura on the brainmask.mgz (thus I would run recon-all -autorecon-pial -subjid xxxx).  After examining the output the next day, I then add control points in the anterior temporal lobe or other places if needed on the same subject ( recon-all -autorecon2-cp -autorecon3 -subjid xxxx ).