Hi
I’m trying to run free surfer on a set of T1 images.
I tried to do it on one patient first before running it on the whole dataset.
I ran the recon-all with the -all option
I had an error message one minute after it has been launched.
It stopped at the mri_nu_correct.mni.
Could you please advise on how to fix this error?
Please find below the log file
Thank you for you help
Best regards
Salem

_____________________________________________

Fri Jul 15 10:20:05 EEST 2016
/usr/local/freesurfer/subjects/AZH
/usr/local/freesurfer/bin/recon-all
-subject AZH -i AZH.nii -all
subjid AZH
setenv SUBJECTS_DIR /usr/local/freesurfer/subjects
FREESURFER_HOME /usr/local/freesurfer
Actual FREESURFER_HOME /usr/local/freesurfer
build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
Linux F23 4.2.3-300.fc23.x86_64 #1 SMP Mon Oct 5 15:42:54 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux
cputime      unlimited
filesize     unlimited
datasize     unlimited
stacksize    8192 kbytes
coredumpsize 0 kbytes
memoryuse    unlimited
vmemoryuse   unlimited
descriptors  1024
memorylocked 64 kbytes
maxproc      31792
maxlocks     unlimited
maxsignal    31792
maxmessage   819200
maxnice      0
maxrtprio    0
maxrttime    unlimited

             total        used        free      shared  buff/cache   available
Mem:        8159752     5185268      174908        7672     2799576     2803616
Swap:      15359996    15359964          32

########################################
program versions used
$Id: recon-all,v 1.379.2.73 2013/05/12 23:15:37 nicks Exp $
$Id: mri_motion_correct.fsl,v 1.14 2011/03/02 20:16:39 nicks Exp $
mri_convert -all-info
ProgramName: mri_convert  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:06-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
FLIRT version 5.5
$Id: talairach_avi,v 1.9 2011/03/02 18:38:06 nicks Exp $
mri_convert --version
stable5
ProgramName: tkregister2_cmdl  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:06-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: tkregister2.c,v 1.121.2.1 2011/03/28 20:25:16 greve Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
ProgramName: mri_make_uchar  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:06-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:06-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_normalize.c,v 1.73.2.1 2012/10/17 19:11:32 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_watershed  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:06-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_watershed.cpp,v 1.96.2.1 2011/11/08 22:18:44 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_gcut  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_segment  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_segment.c,v 1.40 2011/03/02 00:04:24 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_label2label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_label2label.c,v 1.40.2.2 2013/04/02 16:26:15 greve Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400


======= NUMBER OF OPENMP THREADS = 1 =======
ProgramName: mri_em_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_em_register.c,v 1.84.2.3 2013/02/09 00:49:26 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_ca_normalize  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_ca_normalize.c,v 1.52.2.2 2012/10/17 19:11:32 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_ca_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_ca_register.c,v 1.78.2.3 2013/02/09 00:42:20 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:07-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_ca_label.c,v 1.96.2.1 2012/08/28 22:11:20 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_pretess  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_pretess.c,v 1.20 2011/03/02 00:04:23 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_fill  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_fill.c,v 1.118 2011/03/16 21:23:49 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_tessellate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_tessellate.c,v 1.36 2011/03/02 00:04:25 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_concatenate_lta  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_concatenate_lta.c,v 1.10 2011/03/16 21:23:48 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_normalize_tp2  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_smooth  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:08-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_smooth.c,v 1.28 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_inflate  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_inflate.c,v 1.43 2011/03/02 00:04:32 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_curvature  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_sphere  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_sphere.c,v 1.57 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_fix_topology  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_fix_topology.c,v 1.48 2011/03/02 00:04:32 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_topo_fixer  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_ca_label  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_ca_label.c,v 1.35 2011/03/02 00:04:27 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_euler_number  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:09-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_euler_number.c,v 1.8.2.2 2013/01/14 22:40:07 greve Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_make_surfaces  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_make_surfaces.c,v 1.127.2.6 2013/05/12 22:28:01 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_register.c,v 1.59 2011/03/02 00:04:33 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_volmask  ProgramArguments: --all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_volmask.cpp,v 1.25 2011/03/02 00:04:34 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_anatomical_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_anatomical_stats.c,v 1.72 2011/03/02 00:04:26 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mrisp_paint  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mrisp_paint.c,v 1.11 2011/03/02 00:04:35 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_curvature_stats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:10-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_curvature_stats.c,v 1.64 2011/03/02 00:04:30 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mris_calc  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mris_calc.c,v 1.37.2.8 2013/01/28 17:05:17 greve Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
$Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $

ProgramName: mri_robust_register  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_robust_register.cpp,v 1.52.2.3 2012/11/20 17:26:47 mreuter Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
$Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $

ProgramName: mri_robust_template  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_robust_template.cpp,v 1.37.2.2 2012/10/10 19:59:06 mreuter Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_and  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_or  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_or.c,v 1.3 2011/03/02 00:04:13 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_fuse_segmentations  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
ProgramName: mri_segstats  ProgramArguments: -all-info  ProgramVersion: $Name: stable5 $  TimeStamp: 2016/07/15-07:20:11-GMT  BuildTimeStamp: May 13 2013 16:24:28  CVS: $Id: mri_segstats.c,v 1.75.2.9 2013/02/16 00:09:33 greve Exp $  User: root  Machine: F23  Platform: Linux  PlatformVersion: 4.2.3-300.fc23.x86_64  CompilerName: GCC  CompilerVersion: 40400
#######################################
GCADIR /usr/local/freesurfer/average
GCA RB_all_2008-03-26.gca
GCASkull RB_all_withskull_2008-03-26.gca
AvgCurvTif average.curvature.filled.buckner40.tif
GCSDIR /usr/local/freesurfer/average
GCS curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs
#######################################
/usr/local/freesurfer/subjects/AZH

mri_convert /home/sh156/Desktop/AZH.nii /usr/local/freesurfer/subjects/AZH/mri/orig/001.mgz

mri_convert /home/sh156/Desktop/AZH.nii /usr/local/freesurfer/subjects/AZH/mri/orig/001.mgz
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /home/sh156/Desktop/AZH.nii...
TR=8.39, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.994667, 0.103136, 0)
j_ras = (-0.0980387, 0.945506, -0.310494)
k_ras = (-0.0320231, 0.308838, 0.950575)
writing to /usr/local/freesurfer/subjects/AZH/mri/orig/001.mgz...
#--------------------------------------------
#@# MotionCor Fri Jul 15 10:20:16 EEST 2016
Found 1 runs
/usr/local/freesurfer/subjects/AZH/mri/orig/001.mgz
Checking for (invalid) multi-frame inputs...
WARNING: only one run found. This is OK, but motion
correction cannot be performed on one run, so I'll
copy the run to rawavg and continue.

cp /usr/local/freesurfer/subjects/AZH/mri/orig/001.mgz /usr/local/freesurfer/subjects/AZH/mri/rawavg.mgz

/usr/local/freesurfer/subjects/AZH

mri_convert /usr/local/freesurfer/subjects/AZH/mri/rawavg.mgz /usr/local/freesurfer/subjects/AZH/mri/orig.mgz --conform

mri_convert /usr/local/freesurfer/subjects/AZH/mri/rawavg.mgz /usr/local/freesurfer/subjects/AZH/mri/orig.mgz --conform
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from /usr/local/freesurfer/subjects/AZH/mri/rawavg.mgz...
TR=8.39, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (0.994667, 0.103136, 0)
j_ras = (-0.0980387, 0.945506, -0.310494)
k_ras = (-0.0320231, 0.308838, 0.950575)
Original Data has (1.00001, 0.892857, 0.892857) mm size and (159, 166, 204) voxels.
Data is conformed to 1 mm size and 256 voxels for all directions
changing data type from float to uchar (noscale = 0)...
MRIchangeType: Building histogram
Reslicing using trilinear interpolation
writing to /usr/local/freesurfer/subjects/AZH/mri/orig.mgz...

mri_add_xform_to_header -c /usr/local/freesurfer/subjects/AZH/mri/transforms/talairach.xfm /usr/local/freesurfer/subjects/AZH/mri/orig.mgz /usr/local/freesurfer/subjects/AZH/mri/orig.mgz

INFO: extension is mgz
#--------------------------------------------
#@# Talairach Fri Jul 15 10:20:28 EEST 2016
/usr/local/freesurfer/subjects/AZH/mri

mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz

Linux F23 4.2.3-300.fc23.x86_64 #1 SMP Mon Oct 5 15:42:54 UTC 2015 x86_64 x86_64 x86_64 GNU/Linux

recon-all -s AZH exited with ERRORS at Fri Jul 15 10:20:32 EEST 2016

To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting