Have you looked in transforms/talairach_avi.log?

On 08/07/2014 07:57 AM, Francesco Deleo wrote:
> Thank you Doug!
> but i tried it in many cases but I've always received the same error
> message...
> Is there something else I can try?
>
> Francesco
>
>
> 2014-08-07 0:46 GMT+02:00 Douglas N Greve <greve@nmr.mgh.harvard.edu

> <mailto:greve@nmr.mgh.harvard.edu>>:

>
>     Try it with -notal-check
>     doug
>
>     On 08/06/2014 04:39 PM, Francesco Deleo wrote:
>     > I all!
>     >
>     > I am a new freesurfer user.
>     > I have a problem when I perform the recon-all -all, in about 15% of
>     > MRI scans, all made with the same scanning protocol (T1 MPRAGE in a
>     > SIEMENS Avanto 1,5 T).
>     >
>     > I can't recognize any difference between those scans which work
>     > correctly and those not.
>     > I have never found the same error on 3T MRI scans.
>     >
>     > I've already tried to add these flags to the recon-all -all command:
>     > -use-mritotal
>     > -talairach -use-mritotal
>     > -notalairach
>     > but I've always received an error message
>     >
>     > Thank you very much
>     >
>     > ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
>     > Darwin pro-di-villani.besta.local 13.3.0 Darwin Kernel Version
>     13.3.0:
>     > Tue Jun  3 21:27:35 PDT 2014;
>     root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64
>     >
>     > Thanks very much for your attention
>     >
>     > Francesco
>     > Milan, Italy
>     >
>     >
>     ---------------------------------------------------------------------
>     >
>     > FREESURFER_HOME: /Applications/freesurfer
>     >
>     > Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
>     >
>     > Kernel info: Darwin 13.3.0 x86_64
>     >
>     >
>     ---------------------------------------------------------------------
>     >
>     >
>     > LAST LINES IN TALAIRACH_AVI.LOG
>     >
>     > parameters
>     >     9.0270  134.9373  110.8627  -84.3566   -7.5458  -11.3475
>     > eta,q 0.95791  3.72402
>     >   0.0485  0.0470  0.0477  0.0513  0.0470  0.0452
>     >   0.0475  0.0471  0.0478  0.0513  0.0457  0.0435
>     >   0.0472  0.0472  0.0476  0.0428  0.0434  0.0415
>     >   0.0471  0.0471  0.0476  0.0435  0.0430  0.0415
>     >   0.0470  0.0478  0.0457  0.0525  0.0415  0.0430
>     >   0.0473  0.0511  0.0430  0.0548  0.0442  0.0453
>     >   0.0486  0.0426  0.0406  0.0672  0.0431  0.0503
>     > niter,ni,del,rscale     7    3   12.0000    1.2000
>     > imgrege: no voxels in register
>     > ERROR: 'imgreg_4dfp
>     > /Applications/freesurfer/average/711-2C_as_mni_average_305
>     > /Applications/freesurfer/average/711-2B_as_mni_average_305_mask
>     > talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283'
>     > failed! status=254
>     > ERROR: mpr2mni305 execution aborted
>     >
>     >
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>     --
>     Douglas N. Greve, Ph.D.
>     MGH-NMR Center

>     greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
www.nmr.mgh.harvard.edu/facility/filedrop/index.html
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