Hankee,

mris_volume will simply return the volume of the surface you request.  You will have to do the subtraction, pial minus white, yourself.

Jenni

 


From: hankee [mailto:duhanjian@sohu.com]
Sent: Sunday, April 29, 2007 12:24 PM
To: Jenni Pacheco
Subject: Re: (
瑞星提示-此邮件可能是垃圾邮件)RE: [Freesurfer] about the Gray matter volume

 

I can't see the total gray matter volume in the ?h.aparc.stats file.If I run the mris_volume ?h.surface command in the

<subjid>/surf directory, It will produce the new file in this directory? which data will include in this file?

After that I use the formula:gm volume = pial volume - white volume to create the total gray matter volume? Am I right?

Thank you very much!

hankee

 

hankeeduhanjian@sohu.com

2007-04-30

----- Original Message -----

From: Jenni Pacheco

To: duhanjian

Sent: 2007-04-29, 22:39:59

Subject: (瑞星提示-此邮件可能是垃圾邮件)RE: [Freesurfer] about the Gray matter volume

 

Hi Hankee,

You can use mris_volume to find this if you can’t get it from the aparc.stats:

https://surfer.nmr.mgh.harvard.edu/fswiki/MorphometryStats

Jenni


From: hankee [mailto:duhanjian@sohu.com]
Sent: Sunday, April 29, 2007 10:01 AM
To: Jenni Pacheco
Subject: Re: (
瑞星提示-此邮件可能是垃圾邮件)RE: [Freesurfer] about the Gray matter volume

But I only can see the the total white matter volume in the ?h.aparc.stats file,don't have total gray matter volume it the this file.

Thank you!

hankee

hankeeduhanjian@sohu.com

2007-04-29

----- Original Message -----

Sent: 2007-04-29, 21:16:25

Subject: (瑞星提示-此邮件可能是垃圾邮件)RE: [Freesurfer] about the Gray matter volume

This is reported in the ?h.aparc.stats file that is generated when the parcellation is run.

Jenni


From: freesurfer-bounces@nmr.mgh.harvard.edu [mailto:freesurfer-bounces@nmr.mgh.harvard.edu] On Behalf Of hankee
Sent: Sunday, April 29, 2007 8:43 AM
To: freesurfer
Subject: [Freesurfer] about the Gray matter volume

How to calculate the total gray matter volume of the brain using FreeSurfer software ?

2007-04-29