how was it created?

Dear freesurfer experts,

I am trying to over brainstem mask of my patients' group on mmi_colin_t1hires atlas. I had no problems in overlaying thalamus or amygdala mask, but somehow the midbrain mask is shifted from the actual place (please see attachment). Can you please let me know how do I correct this error?

Thanks for all your help.

Kind regards,

Sam

--

Dr Sampada Sinha

​Research medical scientist (B)​

Department of Geriatric Mental Health (DGMH)

King George Medical University

Lucknow-226003

​, Uttar Pradesh​

India

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