Hello FreeSurfer Developers,
I'm attempting to convert my .nii
files (taken from ADNI dataset) to subject files (like bert). For the
same I'm following this website :
MailScanner has detected a possible fraud attempt from "secure-web.cisco.com" claiming to be https://neuroimage.usc.edu/brainstorm/Tutorials/LabelFreeSurferI'm getting an error while performing step 4 of 'Running Freesurfer' heading.
Command that is giving error : recon-all -all -subjid <subject_id>
Here my <subject_id> is subject_0295
Error on the terminal : recon-all -s subject_0295 exited with ERRORS at Tue Dec 8 18:25:40 IST 2020
The freesurfer/subjects/subject_0295/scripts/recon-all.log file didn't mention any specific error.
I've
searched the list and no similar errors have been reported. Does anyone
have any thoughts on how to trouble-shoot this one? Also, I have
attached the recon-all.log in case it's of any use.
1) FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
2) Platform: Ubuntu 16.04.7 LTS
3) recon-all.log: see attached
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Regards,
Ms. Devanshi Jain