Fri Nov 6 10:05:01 UTC 2020 /home/michele/spd_processing /usr/local/freesurfer/bin/trac-all -prep -c tracula/dmrirc.example Subject tracula SUBJECTS_DIR /home/michele/spd_processing FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a michele ian-System-Product-Name Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63499 maxlocks unlimited maxsignal 63499 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 16369620 9422976 244852 683196 6701792 5959644 Swap: 2097148 25600 2071548 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:05:01-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 New invocation of trac-preproc michele ian-System-Product-Name Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63499 maxlocks unlimited maxsignal 63499 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 16369620 9425680 213540 683196 6730400 5956112 Swap: 2097148 25600 2071548 #------------------------------------- /usr/local/freesurfer/bin/trac-preproc #------------------------------------- #@# Image corrections Fri Nov 6 10:05:01 UTC 2020 mri_convert --bvec-voxel ./DTI_nifti.nii.gz ./tracula/dmri/dwi_orig.nii.gz mri_convert.bin --bvec-voxel ./DTI_nifti.nii.gz ./tracula/dmri/dwi_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./DTI_nifti.nii.gz... TR=12172.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999217, 0.0113, -0.0379199) j_ras = (-0.000670002, 0.953383, 0.301761) k_ras = (-0.0395621, -0.30155, 0.952629) writing to ./tracula/dmri/dwi_orig.nii.gz... cp ./bvec.bvec ./tracula/dmri/dwi_orig.bvecs cp ./bval.bval ./tracula/dmri/dwi_orig.bvals mv -f ./tracula/dmri/bvecs.tmp ./tracula/dmri/dwi_orig.bvecs mv -f ./tracula/dmri/bvals.tmp ./tracula/dmri/dwi_orig.bvals orientLAS ./tracula/dmri/dwi_orig.nii.gz ./tracula/dmri/dwi_orig_las.nii.gz INFO: input image orientation is LAS INFO: input image determinant is -8 mri_convert -oni 120 -onj 120 -onk 80 -oid -0.999217 0.0113 -0.0379199 -ojd -0.000670002 0.953383 0.301761 -okd -0.0395621 -0.30155 0.952629 -oc -0.536919 3.14075 15.6526 -rt nearest ./tracula/dmri/dwi_orig.nii.gz ./tracula/dmri/dwi_orig_las.nii.gz mri_convert.bin -oni 120 -onj 120 -onk 80 -oid -0.999217 0.0113 -0.0379199 -ojd -0.000670002 0.953383 0.301761 -okd -0.0395621 -0.30155 0.952629 -oc -0.536919 3.14075 15.6526 -rt nearest ./tracula/dmri/dwi_orig.nii.gz ./tracula/dmri/dwi_orig_las.nii.gz normalizing out_j_direction: (-0.000670002, 0.953383, 0.301761) -> (-0.000670002, 0.953383, 0.301761) normalizing out_k_direction: (-0.0395621, -0.30155, 0.952629) -> (-0.0395621, -0.30155, 0.952629) $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dmri/dwi_orig.nii.gz... TR=12172.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999217, 0.0113, -0.0379199) j_ras = (-0.000670002, 0.953383, 0.301761) k_ras = (-0.0395621, -0.30155, 0.952629) Reslicing using nearest writing to ./tracula/dmri/dwi_orig_las.nii.gz... INFO: found ./tracula/dmri/dwi_orig.bvals, copying INFO: found ./tracula/dmri/dwi_orig.bvecs, converting to LAS mv -f ./tracula/dmri/dwi_orig_las.bvecs ./tracula/dmri/bvecs mv -f ./tracula/dmri/dwi_orig_las.bvals ./tracula/dmri/bvals eddy_correct ./tracula/dmri/dwi_orig_las.nii.gz ./tracula/dmri/dwi.nii.gz 0 processing ./tracula/dmri/dwi_tmp0000 processing ./tracula/dmri/dwi_tmp0001 processing ./tracula/dmri/dwi_tmp0002 processing ./tracula/dmri/dwi_tmp0003 processing ./tracula/dmri/dwi_tmp0004 processing ./tracula/dmri/dwi_tmp0005 processing ./tracula/dmri/dwi_tmp0006 processing ./tracula/dmri/dwi_tmp0007 processing ./tracula/dmri/dwi_tmp0008 processing ./tracula/dmri/dwi_tmp0009 processing ./tracula/dmri/dwi_tmp0010 processing ./tracula/dmri/dwi_tmp0011 processing ./tracula/dmri/dwi_tmp0012 processing ./tracula/dmri/dwi_tmp0013 processing ./tracula/dmri/dwi_tmp0014 processing ./tracula/dmri/dwi_tmp0015 processing ./tracula/dmri/dwi_tmp0016 processing ./tracula/dmri/dwi_tmp0017 processing ./tracula/dmri/dwi_tmp0018 processing ./tracula/dmri/dwi_tmp0019 processing ./tracula/dmri/dwi_tmp0020 processing ./tracula/dmri/dwi_tmp0021 processing ./tracula/dmri/dwi_tmp0022 processing ./tracula/dmri/dwi_tmp0023 processing ./tracula/dmri/dwi_tmp0024 processing ./tracula/dmri/dwi_tmp0025 processing ./tracula/dmri/dwi_tmp0026 processing ./tracula/dmri/dwi_tmp0027 processing ./tracula/dmri/dwi_tmp0028 processing ./tracula/dmri/dwi_tmp0029 processing ./tracula/dmri/dwi_tmp0030 mv -f ./tracula/dmri/bvecs ./tracula/dmri/bvecs.norot xfmrot ./tracula/dmri/dwi.ecclog ./tracula/dmri/bvecs.norot ./tracula/dmri/bvecs ln -sf ./tracula/dmri/dwi.nii.gz ./tracula/dmri/data.nii.gz mri_convert --frame 0 ./tracula/dmri/dwi.nii.gz ./tracula/dmri/lowb.nii.gz mri_convert.bin --frame 0 ./tracula/dmri/dwi.nii.gz ./tracula/dmri/lowb.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dmri/dwi.nii.gz... TR=12172.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999217, 0.0113, -0.0379199) j_ras = (-0.000670001, 0.953383, 0.301761) k_ras = (-0.0395621, -0.30155, 0.952629) keeping frame 0 writing to ./tracula/dmri/lowb.nii.gz... mri_concat --i ./tracula/dmri/lowb.nii.gz --mean --o ./tracula/dmri/lowb.nii.gz ninputs = 1 Checking inputs nframestot = 1 Allocing output Done allocing nframes = 1 Computing mean across frames Writing to ./tracula/dmri/lowb.nii.gz bet ./tracula/dmri/lowb.nii.gz ./tracula/dmri/lowb_brain.nii.gz -m -f 0.3 mv -f ./tracula/dmri/lowb_brain_mask.nii.gz ./tracula/dlabel/diff #------------------------------------- #@# Image quality assessment Fri Nov 6 10:09:45 UTC 2020 /usr/local/freesurfer/bin/dmri_motion --dwi ./tracula/dmri/dwi_orig.nii.gz --mat ./tracula/dmri/dwi.ecclog --bval ./tracula/dmri/bvals --T 1123.000000 --out ./tracula/dmri/dwi_motion.txt cwd /home/michele/spd_processing cmdline /usr/local/freesurfer/bin/dmri_motion --dwi ./tracula/dmri/dwi_orig.nii.gz --mat ./tracula/dmri/dwi.ecclog --bval ./tracula/dmri/bvals --T 1123.000000 --out ./tracula/dmri/dwi_motion.txt sysname Linux hostname ian-System-Product-Name machine x86_64 user michele Output motion measure file: /home/michele/spd_processing/tracula/dmri/dwi_motion.txt Input transform file: /home/michele/spd_processing/tracula/dmri/dwi.ecclog Input DWI file: /home/michele/spd_processing/tracula/dmri/dwi_orig.nii.gz Input b-value table: /home/michele/spd_processing/tracula/dmri/bvals Low-b image intensity threshold: 1123 Nominal diffusivity: 0.001 Loading volume-to-baseline affine transformations Computing between-volume head motion measures INFO: Processed transforms for 31 volumes Loading DWI volume series from /home/michele/spd_processing/tracula/dmri/dwi_orig.nii.gz Loading b-value table from /home/michele/spd_processing/tracula/dmri/bvals Computing within-volume head motion measures Done in 1.548 sec. dmri_motion done #------------------------------------- #@# Intra-subject registration Fri Nov 6 10:09:46 UTC 2020 mri_convert /home/michele/spd_processing/tracula/mri/brain.mgz ./tracula/dmri/brain_anat_orig.nii.gz mri_convert.bin /home/michele/spd_processing/tracula/mri/brain.mgz ./tracula/dmri/brain_anat_orig.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/michele/spd_processing/tracula/mri/brain.mgz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) writing to ./tracula/dmri/brain_anat_orig.nii.gz... orientLAS ./tracula/dmri/brain_anat_orig.nii.gz ./tracula/dmri/brain_anat.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dmri/brain_anat_orig.nii.gz ./tracula/dmri/brain_anat.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dmri/brain_anat_orig.nii.gz ./tracula/dmri/brain_anat.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dmri/brain_anat_orig.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dmri/brain_anat.nii.gz... tkregister2 --mov ./tracula/dmri/brain_anat_orig.nii.gz --targ ./tracula/dmri/brain_anat.nii.gz --regheader --noedit --fslregout ./tracula/dmri/xfms/anatorig2anat.mat --reg ./tracula/dmri/xfms/anat2anatorig.dat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl target volume ./tracula/dmri/brain_anat.nii.gz movable volume ./tracula/dmri/brain_anat_orig.nii.gz reg file ./tracula/dmri/xfms/anat2anatorig.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target ./tracula/dmri/brain_anat.nii.gz INFO: target does not conform to COR format, so I'm going to reslice to COR. This will not affect the final registration. Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable ./tracula/dmri/brain_anat_orig.nii.gz Tmov: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00000; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 1.00000 0.00000 0.00000 0.00000; 0.00000 1.00000 0.00000 0.00000; 0.00000 0.00000 1.00000 1.00000; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = subject-unknown RegMat --------------------------- 1.00000 0.00000 0.00000 0.00000; 0.00000 0.00000 -1.00000 0.00000; 0.00000 1.00000 0.00000 1.00000; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -1, ref det = -1 convert_xfm -omat ./tracula/dmri/xfms/anat2anatorig.mat -inverse ./tracula/dmri/xfms/anatorig2anat.mat tmp ./tracula/dmri/xfms/tmp.bbregister.7196 Log file is ./tracula/dmri/xfms/anatorig2diff.bbr.dat.log Fri Nov 6 10:09:48 UTC 2020 setenv SUBJECTS_DIR /home/michele/spd_processing cd /home/michele/spd_processing /usr/local/freesurfer/bin/bbregister --s tracula --init-fsl --dti --mov ./tracula/dmri/dwi.nii.gz --reg ./tracula/dmri/xfms/anatorig2diff.bbr.dat --fslmat ./tracula/dmri/xfms/diff2anatorig.bbr.mat $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux FREESURFER_HOME /usr/local/freesurfer mri_convert ./tracula/dmri/dwi.nii.gz ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii mri_convert.bin ./tracula/dmri/dwi.nii.gz ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dmri/dwi.nii.gz... TR=12172.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999217, 0.0113, -0.0379199) j_ras = (-0.000670001, 0.953383, 0.301761) k_ras = (-0.0395621, -0.30155, 0.952629) writing to ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii... fslregister --s tracula --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --niters 1 --maxangle 90 --tmp ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov Log file is ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat.fslregister.log Fri Nov 6 10:09:50 UTC 2020 --s tracula --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --niters 1 --maxangle 90 --tmp ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister --dof 6 --fsvol brainmask.mgz --nobetmov $Id: fslregister,v 1.40 2016/02/12 21:43:15 zkaufman Exp $ ian-System-Product-Name Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux nIters 1 -------------------------------------- /home/michele/spd_processing mri_convert /home/michele/spd_processing/tracula/mri/brainmask.mgz ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/refvol.fslregister.nii mri_convert.bin /home/michele/spd_processing/tracula/mri/brainmask.mgz ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/refvol.fslregister.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/michele/spd_processing/tracula/mri/brainmask.mgz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) writing to ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/refvol.fslregister.nii... -------------------------------------- /home/michele/spd_processing mri_convert ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii --frame 0 mri_convert.bin ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii --frame 0 $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii... TR=12172.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-0.999217, 0.0113, -0.0379199) j_ras = (-0.000670001, 0.953383, 0.301761) k_ras = (-0.0395621, -0.30155, 0.952629) keeping frame 0 writing to ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii... Mov determinant is -8 /home/michele/spd_processing tkregister2_cmdl --mov ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii --reg ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/reg0.7238.dat --regheader --fslregout ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat.fsl.mat0 --s tracula --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii reg file ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/reg0.7238.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /home/michele/spd_processing/tracula/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii Tmov: -------------------- -2.00000 0.00000 0.00000 120.00000; 0.00000 0.00000 2.00000 -80.00000; 0.00000 -2.00000 0.00000 120.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 1, float2int = 0 Computing reg from header (and possibly input matrix) ---- Input registration matrix (computed) -------- 0.99922 -0.01130 0.03792 1.34613; -0.03956 -0.30155 0.95263 -1.42731; 0.00067 -0.95338 -0.30176 1.52663; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99922 -0.01130 0.03792 1.34613; -0.03956 -0.30155 0.95263 -1.42731; 0.00067 -0.95338 -0.30176 1.52663; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = tracula RegMat --------------------------- 0.99922 -0.01130 0.03792 1.34613; -0.03956 -0.30155 0.95263 -1.42731; 0.00067 -0.95338 -0.30176 1.52663; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI tkreg2FSL: mov det = -8, ref det = -1 Fri Nov 6 10:09:52 UTC 2020 /home/michele/spd_processing flirt.fsl -ref ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/refvol.fslregister.nii -in ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/fsl.5.0.2.xyztrans.sch -init ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat.fsl.mat0 Fri Nov 6 10:09:57 UTC 2020 /home/michele/spd_processing flirt.fsl -ref ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/refvol.fslregister.nii -in ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/movvol.fslregister.nii -bins 256 -cost corratio -dof 6 -searchrx -90 90 -searchry -90 90 -searchrz -90 90 -verbose 0 -omat ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat.fsl.mat -init ./tracula/dmri/xfms/tmp.bbregister.7196/fslregister/fslmat0.trans.mat -schedule /usr/local/freesurfer/bin/flirt.newdefault.20080811.sch tkregister2_cmdl --s tracula --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --fslreg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat.fsl.mat --noedit tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl ---- FSL registration matrix -------- 0.99902 0.00462 0.04399 5.58319; 0.04349 -0.28439 -0.95772 233.30499; 0.00808 0.95870 -0.28431 37.09070; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii reg file ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 INFO: loading target /home/michele/spd_processing/tracula/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii Tmov: -------------------- -2.00000 0.00000 0.00000 120.00000; 0.00000 0.00000 2.00000 -80.00000; 0.00000 -2.00000 0.00000 120.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 FSLOUTPUTTYPE NIFTI fsl2TkReg: mov det = -8, ref det = -1 ---- Input registration matrix (computed) -------- 0.99902 -0.00808 0.04349 1.54790; -0.04399 -0.28431 0.95772 0.39211; 0.00462 -0.95870 -0.28439 2.33209; 0.00000 0.00000 0.00000 1.00000; --------------------------------------- ---- Input registration matrix -------- 0.99902 -0.00808 0.04349 1.54790; -0.04399 -0.28431 0.95772 0.39211; 0.00462 -0.95870 -0.28439 2.33209; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = tracula RegMat --------------------------- 0.99902 -0.00808 0.04349 1.54790; -0.04399 -0.28431 0.95772 0.39211; 0.00462 -0.95870 -0.28439 2.33209; 0.00000 0.00000 0.00000 1.00000; Started at Fri Nov 6 10:09:50 UTC 2020 Ended at Fri Nov 6 10:10:10 UTC 2020 fslregister Done To check results, run: tkregister2 --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --surf orig mri_segreg --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --init-reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --out-reg ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /home/michele/spd_processing cd /home/michele/spd_processing mri_segreg --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --init-reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat --out-reg ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat --subsamp-brute 100 --subsamp 100 --tol 1e-4 --tol1d 1e-3 --brute -4 4 4 --surf white --gm-proj-frac 0.5 --gm-gt-wm 0.5 sysname Linux hostname ian-System-Product-Name machine x86_64 user michele movvol ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii regfile ./tracula/dmri/xfms/tmp.bbregister.7196/reg.init.dat subject tracula dof 6 outregfile ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 100 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000100 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1604832749 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99902 -0.00808 0.04349 1.54790; -0.04399 -0.28431 0.95772 0.39211; 0.00462 -0.95870 -0.28439 2.33209; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.967568 1 -25.0 -25.0 25.0 0.997628 2 -25.0 25.0 -25.0 0.975516 3 -25.0 25.0 25.0 1.018360 4 25.0 -25.0 -25.0 1.002096 5 25.0 -25.0 25.0 1.000428 6 25.0 25.0 -25.0 0.996402 7 25.0 25.0 25.0 0.970436 REL: 8 0.483452 7.928434 0.991054 rel = 0.487816 Initial costs ---------------- Number of surface hits 2008 WM Intensity 1734.6529 +/- 654.3208 Ctx Intensity 2349.4021 +/- 1050.7746 Pct Contrast 26.0122 +/- 40.3729 Cost 0.4835 RelCost 0.4878 ------------------------------------ Brute force preopt -4 4 4, n = 729 0 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 -4.0000 0.9463 0.9463 0.0 6 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 -4.0000 0.9357 0.9357 0.0 7 -4.0000 -4.0000 -4.0000 -4.0000 4.0000 0.0000 0.9254 0.9254 0.0 12 -4.0000 -4.0000 -4.0000 0.0000 0.0000 -4.0000 0.9186 0.9186 0.0 15 -4.0000 -4.0000 -4.0000 0.0000 4.0000 -4.0000 0.8581 0.8581 0.0 33 -4.0000 -4.0000 0.0000 -4.0000 4.0000 -4.0000 0.8173 0.8173 0.0 120 -4.0000 0.0000 0.0000 0.0000 0.0000 -4.0000 0.7714 0.7714 0.0 123 -4.0000 0.0000 0.0000 0.0000 4.0000 -4.0000 0.7449 0.7449 0.0 124 -4.0000 0.0000 0.0000 0.0000 4.0000 0.0000 0.7120 0.7120 0.0 364 0.0000 0.0000 0.0000 0.0000 0.0000 0.0000 0.4835 0.4835 0.0 Brute Force -------------------------- Min cost was 0.483452 Number of iterations 729 Search time 0.439000 sec Parameters at best (transmm, rotdeg) 0.000 0.000 0.000 0.000 0.000 0.000 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 0 1 0 2 0 3 0 4 0 5 0 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000100 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.483452 7 -0.144 0.000 0.000 0.000 0.000 0.000 0.4769877989 13 -0.147 0.000 0.000 0.000 0.000 0.000 0.4769705903 18 -0.147 -1.618 0.000 0.000 0.000 0.000 0.4338213489 19 -0.147 -1.063 0.000 0.000 0.000 0.000 0.3856360026 21 -0.147 -0.657 0.000 0.000 0.000 0.000 0.3748525623 23 -0.147 -0.778 0.000 0.000 0.000 0.000 0.3701097137 24 -0.147 -0.802 0.000 0.000 0.000 0.000 0.3698969306 26 -0.147 -0.803 0.000 0.000 0.000 0.000 0.3698946137 27 -0.147 -0.804 0.000 0.000 0.000 0.000 0.3698895472 28 -0.147 -0.807 0.000 0.000 0.000 0.000 0.3698893322 30 -0.147 -0.806 0.000 0.000 0.000 0.000 0.3698875025 37 -0.147 -0.806 -0.033 0.000 0.000 0.000 0.3691013338 50 -0.147 -0.806 -0.033 -0.186 0.000 0.000 0.3603254156 53 -0.147 -0.806 -0.033 -0.188 0.000 0.000 0.3603110465 54 -0.147 -0.806 -0.033 -0.190 0.000 0.000 0.3603024060 56 -0.147 -0.806 -0.033 -0.191 0.000 0.000 0.3603015095 64 -0.147 -0.806 -0.033 -0.191 0.068 0.000 0.3588588585 66 -0.147 -0.806 -0.033 -0.191 0.054 0.000 0.3586333281 69 -0.147 -0.806 -0.033 -0.191 0.053 0.000 0.3586301413 71 -0.147 -0.806 -0.033 -0.191 0.050 0.000 0.3586250038 73 -0.147 -0.806 -0.033 -0.191 0.051 0.000 0.3586240359 83 -0.147 -0.806 -0.033 -0.191 0.051 -0.007 0.3586069334 85 -0.147 -0.806 -0.033 -0.191 0.051 -0.004 0.3585923655 94 -0.203 -1.114 -0.046 -0.263 0.070 -0.006 0.3557859644 98 -0.196 -1.076 -0.044 -0.254 0.068 -0.006 0.3539957191 99 -0.193 -1.058 -0.043 -0.250 0.067 -0.006 0.3538977666 100 -0.194 -1.064 -0.044 -0.251 0.067 -0.006 0.3537918767 101 -0.194 -1.066 -0.044 -0.252 0.067 -0.006 0.3537895646 103 -0.194 -1.065 -0.044 -0.252 0.067 -0.006 0.3537869417 powell nthiter 1: fret = 0.353787 115 -0.170 -1.065 -0.044 -0.252 0.067 -0.006 0.3532547608 118 -0.171 -1.065 -0.044 -0.252 0.067 -0.006 0.3532526133 128 -0.171 -1.065 -0.044 -0.252 0.067 0.001 0.3531992285 129 -0.171 -1.065 -0.044 -0.252 0.067 -0.000 0.3531933813 130 -0.171 -1.065 -0.044 -0.252 0.067 -0.001 0.3531928096 139 -0.171 -1.065 0.001 -0.252 0.067 -0.001 0.3516829504 140 -0.171 -1.065 0.004 -0.252 0.067 -0.001 0.3515789437 142 -0.171 -1.065 0.013 -0.252 0.067 -0.001 0.3514711875 154 -0.171 -1.065 0.013 -0.246 0.067 -0.001 0.3514015013 155 -0.171 -1.065 0.013 -0.244 0.067 -0.001 0.3513970194 163 -0.171 -1.065 0.013 -0.244 0.169 -0.001 0.3508380168 166 -0.171 -1.065 0.013 -0.244 0.210 -0.001 0.3506534311 167 -0.171 -1.065 0.013 -0.244 0.199 -0.001 0.3503963774 181 -0.170 -1.061 0.013 -0.243 0.199 -0.001 0.3503599175 182 -0.170 -1.059 0.013 -0.243 0.199 -0.001 0.3503578213 powell nthiter 2: fret = 0.350358 194 -0.189 -1.059 0.013 -0.243 0.199 -0.001 0.3502662347 195 -0.181 -1.059 0.013 -0.243 0.199 -0.001 0.3501994893 197 -0.180 -1.059 0.013 -0.243 0.199 -0.001 0.3501990558 208 -0.180 -1.059 0.013 -0.243 0.199 -0.031 0.3501937946 210 -0.180 -1.059 0.013 -0.243 0.199 -0.017 0.3500478678 211 -0.180 -1.059 0.013 -0.243 0.199 -0.016 0.3500390923 212 -0.180 -1.059 0.013 -0.243 0.199 -0.010 0.3500243054 213 -0.180 -1.059 0.013 -0.243 0.199 -0.012 0.3500212560 221 -0.180 -1.059 0.039 -0.243 0.199 -0.012 0.3492271987 234 -0.180 -1.059 0.039 -0.242 0.199 -0.012 0.3491873342 235 -0.180 -1.059 0.039 -0.231 0.199 -0.012 0.3490621566 237 -0.180 -1.059 0.039 -0.234 0.199 -0.012 0.3490295090 249 -0.180 -1.059 0.039 -0.234 0.191 -0.012 0.3489880797 250 -0.180 -1.059 0.039 -0.234 0.192 -0.012 0.3489858291 251 -0.180 -1.059 0.039 -0.234 0.193 -0.012 0.3489845544 265 -0.179 -1.056 0.039 -0.233 0.193 -0.012 0.3489631265 powell nthiter 3: fret = 0.348963 278 -0.201 -1.056 0.039 -0.233 0.193 -0.012 0.3480935008 280 -0.209 -1.056 0.039 -0.233 0.193 -0.012 0.3479348734 281 -0.210 -1.056 0.039 -0.233 0.193 -0.012 0.3479187880 283 -0.212 -1.056 0.039 -0.233 0.193 -0.012 0.3479100954 293 -0.212 -1.056 0.039 -0.233 0.193 -0.010 0.3478450333 294 -0.212 -1.056 0.039 -0.233 0.193 0.001 0.3475950948 307 -0.212 -1.056 0.051 -0.233 0.193 0.001 0.3473933568 308 -0.212 -1.056 0.050 -0.233 0.193 0.001 0.3473806680 309 -0.212 -1.056 0.049 -0.233 0.193 0.001 0.3473759569 311 -0.212 -1.056 0.048 -0.233 0.193 0.001 0.3473751282 321 -0.212 -1.056 0.048 -0.223 0.193 0.001 0.3472628333 322 -0.212 -1.056 0.048 -0.224 0.193 0.001 0.3472312787 323 -0.212 -1.056 0.048 -0.227 0.193 0.001 0.3471978218 348 -0.213 -1.059 0.048 -0.228 0.193 0.001 0.3471677413 349 -0.213 -1.060 0.048 -0.228 0.193 0.001 0.3471664450 powell nthiter 4: fret = 0.347166 361 -0.205 -1.060 0.048 -0.228 0.193 0.001 0.3471648017 362 -0.209 -1.060 0.048 -0.228 0.193 0.001 0.3471212437 399 -0.209 -1.060 0.048 -0.230 0.193 0.001 0.3471109542 410 -0.209 -1.060 0.048 -0.230 0.188 0.001 0.3470937261 411 -0.209 -1.060 0.048 -0.230 0.189 0.001 0.3470845489 424 -0.209 -1.062 0.048 -0.230 0.190 0.001 0.3470816712 427 -0.209 -1.061 0.048 -0.230 0.190 0.001 0.3470811503 428 -0.206 -1.062 0.048 -0.232 0.186 0.001 0.3470591509 434 -0.207 -1.062 0.048 -0.231 0.187 0.001 0.3470585278 435 -0.206 -1.062 0.048 -0.231 0.187 0.001 0.3470570600 powell nthiter 5: fret = 0.347057 489 -0.206 -1.062 0.048 -0.230 0.187 0.001 0.3470548644 508 -0.206 -1.062 0.048 -0.231 0.186 0.001 0.3470538744 510 -0.205 -1.062 0.048 -0.231 0.186 0.001 0.3470538270 511 -0.205 -1.062 0.048 -0.231 0.186 0.001 0.3470534484 515 -0.205 -1.062 0.048 -0.231 0.186 0.001 0.3470533444 Powell done niters = 5 Computing relative cost 0 -25.0 -25.0 -25.0 0.965390 1 -25.0 -25.0 25.0 1.000193 2 -25.0 25.0 -25.0 0.999629 3 -25.0 25.0 25.0 1.005772 4 25.0 -25.0 -25.0 1.003063 5 25.0 -25.0 25.0 0.987783 6 25.0 25.0 -25.0 0.983017 7 25.0 25.0 25.0 0.971373 REL: 8 0.347053 7.916219 0.989527 rel = 0.350726 Number of iterations 5 Min cost was 0.347053 Number of FunctionCalls 518 TolPowell 0.000100 nMaxItersPowell 36 OptimizationTime 0.310000 sec Parameters at optimum (transmm) -0.20550 -1.06192 0.04751 Parameters at optimum (rotdeg) -0.23082 0.18616 0.00064 Final costs ---------------- Number of surface hits 2008 WM Intensity 1675.6677 +/- 585.1956 Ctx Intensity 2218.1095 +/- 876.8058 Pct Contrast 25.6798 +/- 31.8285 Cost 0.3471 RelCost 0.4878 Reg at min cost was 0.99903 -0.01119 0.04254 1.34996; -0.04396 -0.28817 0.95657 -0.66041; 0.00155 -0.95751 -0.28838 2.37296; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat, type = 14 Original Reg 0.99902 -0.00808 0.04349 1.54790; -0.04399 -0.28431 0.95772 0.39211; 0.00462 -0.95870 -0.28439 2.33209; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00001 0.00311 0.00095 0.19794; -0.00003 0.00386 0.00115 1.05251; 0.00307 -0.00118 0.00400 -0.04087; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 1.010147 Computing change in rh position Surface-RMS-Diff-mm 1.011506 0.157709 1.392641 mri_segreg done mri_segreg --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --init-reg ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat --out-reg ./tracula/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost ./tracula/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param ./tracula/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 $Id: mri_segreg.c,v 1.113 2016/05/10 03:23:20 greve Exp $ setenv SUBJECTS_DIR /home/michele/spd_processing cd /home/michele/spd_processing mri_segreg --mov ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii --init-reg ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat --out-reg ./tracula/dmri/xfms/anatorig2diff.bbr.dat --interp trilinear --wm-proj-abs 2 --tol 1e-8 --tol1d 1e-3 --c0 0 --mincost ./tracula/dmri/xfms/anatorig2diff.bbr.dat.mincost --dof 6 --nmax 36 --param ./tracula/dmri/xfms/anatorig2diff.bbr.dat.param --surf white --brute -0.1 0.1 0.1 --cur-reg ./tracula/dmri/xfms/tmp.bbregister.7196/reg.curopt.dat --gm-proj-frac 0.5 --nsub 1 --gm-gt-wm 0.5 sysname Linux hostname ian-System-Product-Name machine x86_64 user michele movvol ./tracula/dmri/xfms/tmp.bbregister.7196/template.nii regfile ./tracula/dmri/xfms/tmp.bbregister.7196/bbr.pass1.dat subject tracula dof 6 outregfile ./tracula/dmri/xfms/anatorig2diff.bbr.dat UseMask 0 UseLH 1 UseRH 1 nsubsamp 1 PenaltySign -1 PenaltySlope 0.500000 PenaltyCenter 0.000000 surfname white GMProjFrac 0.500000 WMProjAbs 2.000000 lhcostfile (null) rhcostfile (null) interp trilinear (1) frame 0 TolPowell 0.000000 nMaxItersPowell 36 n1dmin 3 Profile 0 Gdiag_no -1 AddNoise 0 (0) SynthSeed 1605250156 TransRandMax 0.000000 RotRandMax 0.000000 Translations 0.000000 0.000000 0.000000 Rotations 0.000000 0.000000 0.000000 Input reg 0.99903 -0.01119 0.04254 1.34996; -0.04396 -0.28817 0.95657 -0.66041; 0.00155 -0.95751 -0.28838 2.37296; 0.00000 0.00000 0.00000 1.00000; Loading mov Extracting frame 0 Projecting LH Surfs Loading lh.white surf Loading lh.thickness for GM GM Proj: 1 0.500000 2.000000 WM Proj: 0 0.500000 2.000000 Projecting RH Surfs Loading rh.white surf Loading rh.thickness for GM Projecting RH Surfs Using lh.cortex.label Using rh.cortex.label Computing relative cost 0 -25.0 -25.0 -25.0 0.977887 1 -25.0 -25.0 25.0 0.989545 2 -25.0 25.0 -25.0 0.970500 3 -25.0 25.0 25.0 0.988066 4 25.0 -25.0 -25.0 0.991423 5 25.0 -25.0 25.0 0.972506 6 25.0 25.0 -25.0 0.963725 7 25.0 25.0 25.0 0.982941 REL: 8 0.366140 7.836595 0.979574 rel = 0.373775 Initial costs ---------------- Number of surface hits 201990 WM Intensity 1678.0823 +/- 598.4530 Ctx Intensity 2194.2206 +/- 833.2299 Pct Contrast 25.0920 +/- 31.7227 Cost 0.3661 RelCost 0.3738 ------------------------------------ Brute force preopt -0.1 0.1 0.1, n = 729 0 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 -0.1000 0.3592 0.3592 0.0 7 -0.1000 -0.1000 -0.1000 -0.1000 0.1000 0.0000 0.3586 0.3586 0.0 27 -0.1000 -0.1000 0.0000 -0.1000 -0.1000 -0.1000 0.3536 0.3536 0.0 34 -0.1000 -0.1000 0.0000 -0.1000 0.1000 0.0000 0.3530 0.3530 0.0 61 -0.1000 -0.1000 0.1000 -0.1000 0.1000 0.0000 0.3505 0.3505 0.0 150 -0.1000 0.0000 0.1000 0.0000 0.1000 -0.1000 0.3487 0.3487 0.0 213 -0.1000 0.1000 0.0000 0.1000 0.1000 -0.1000 0.3480 0.3480 0.0 231 -0.1000 0.1000 0.1000 0.0000 0.1000 -0.1000 0.3446 0.3446 0.0 Brute Force -------------------------- Min cost was 0.344631 Number of iterations 729 Search time 0.444000 sec Parameters at best (transmm, rotdeg) -0.100 0.100 0.100 0.000 0.100 -0.100 -------------------------------------------- Starting Powell Minimization Init Powel Params dof = 6 0 -0.1 1 0.1 2 0.1 3 0 4 0.1 5 -0.1 fs_powell::minimize nparams 6 maxfev 36 ftol 0.000000 linmin_xtol_ 0.001000 powell nthiter 0: fret = 0.372309 8 -0.092 0.100 0.100 0.000 0.100 -0.100 0.3722530199 9 -0.088 0.100 0.100 0.000 0.100 -0.100 0.3722474297 18 -0.088 -0.009 0.100 0.000 0.100 -0.100 0.3707454194 19 -0.088 0.004 0.100 0.000 0.100 -0.100 0.3707292748 20 -0.088 0.002 0.100 0.000 0.100 -0.100 0.3707266829 21 -0.088 0.000 0.100 0.000 0.100 -0.100 0.3707252931 23 -0.088 -0.001 0.100 0.000 0.100 -0.100 0.3707249472 31 -0.088 -0.001 0.019 0.000 0.100 -0.100 0.3699544070 32 -0.088 -0.001 0.032 0.000 0.100 -0.100 0.3698836580 33 -0.088 -0.001 0.038 0.000 0.100 -0.100 0.3698734009 42 -0.088 -0.001 0.038 -0.062 0.100 -0.100 0.3694887610 43 -0.088 -0.001 0.038 -0.047 0.100 -0.100 0.3694546481 44 -0.088 -0.001 0.038 -0.048 0.100 -0.100 0.3694545515 52 -0.088 -0.001 0.038 -0.048 -0.011 -0.100 0.3673721119 54 -0.088 -0.001 0.038 -0.048 -0.013 -0.100 0.3673716674 65 -0.088 -0.001 0.038 -0.048 -0.012 -0.089 0.3673373713 66 -0.088 -0.001 0.038 -0.048 -0.012 -0.088 0.3673372464 powell nthiter 1: fret = 0.367337 77 -0.002 -0.001 0.038 -0.048 -0.012 -0.087 0.3657660922 87 -0.002 -0.055 0.038 -0.048 -0.012 -0.087 0.3653136563 89 -0.002 -0.056 0.038 -0.048 -0.012 -0.087 0.3653131647 91 -0.002 -0.057 0.038 -0.048 -0.012 -0.087 0.3653131241 100 -0.002 -0.057 0.060 -0.048 -0.012 -0.087 0.3652124823 101 -0.002 -0.057 0.062 -0.048 -0.012 -0.087 0.3652120626 109 -0.002 -0.057 0.062 -0.110 -0.012 -0.087 0.3648577209 110 -0.002 -0.057 0.062 -0.094 -0.012 -0.087 0.3647924841 111 -0.002 -0.057 0.062 -0.092 -0.012 -0.087 0.3647900471 112 -0.002 -0.057 0.062 -0.090 -0.012 -0.087 0.3647880790 114 -0.002 -0.057 0.062 -0.087 -0.012 -0.087 0.3647868261 124 -0.002 -0.057 0.062 -0.087 -0.078 -0.087 0.3640412897 127 -0.002 -0.057 0.062 -0.087 -0.077 -0.087 0.3640408537 135 -0.002 -0.057 0.062 -0.087 -0.077 -0.070 0.3638297322 136 -0.002 -0.057 0.062 -0.087 -0.077 -0.033 0.3636320877 138 -0.002 -0.057 0.062 -0.087 -0.077 -0.036 0.3636309133 141 0.084 -0.113 0.086 -0.126 -0.141 0.016 0.3624135336 148 0.093 -0.119 0.088 -0.130 -0.148 0.021 0.3624038020 151 0.093 -0.119 0.088 -0.130 -0.148 0.021 0.3624037936 powell nthiter 2: fret = 0.362404 167 0.093 -0.119 0.088 -0.130 -0.148 0.022 0.3624037673 175 0.093 -0.099 0.088 -0.130 -0.148 0.022 0.3622325751 176 0.093 -0.085 0.088 -0.130 -0.148 0.022 0.3622011451 177 0.093 -0.086 0.088 -0.130 -0.148 0.022 0.3621996484 178 0.093 -0.088 0.088 -0.130 -0.148 0.022 0.3621986482 179 0.093 -0.089 0.088 -0.130 -0.148 0.022 0.3621986196 188 0.093 -0.089 0.110 -0.130 -0.148 0.022 0.3621662338 190 0.093 -0.089 0.102 -0.130 -0.148 0.022 0.3621505442 201 0.093 -0.089 0.102 -0.133 -0.148 0.022 0.3621450452 203 0.093 -0.089 0.102 -0.136 -0.148 0.022 0.3621438505 204 0.093 -0.089 0.102 -0.137 -0.148 0.022 0.3621434829 206 0.093 -0.089 0.102 -0.138 -0.148 0.022 0.3621434389 215 0.093 -0.089 0.102 -0.138 -0.136 0.022 0.3620877878 216 0.093 -0.089 0.102 -0.138 -0.134 0.022 0.3620855249 217 0.093 -0.089 0.102 -0.138 -0.133 0.022 0.3620849473 225 0.107 -0.099 0.106 -0.144 -0.144 0.030 0.3620583661 226 0.107 -0.099 0.106 -0.144 -0.144 0.031 0.3620582666 228 0.110 -0.101 0.107 -0.145 -0.146 0.032 0.3620569767 232 0.110 -0.100 0.107 -0.145 -0.146 0.032 0.3620569691 234 0.110 -0.101 0.107 -0.145 -0.146 0.032 0.3620569599 235 0.110 -0.101 0.107 -0.145 -0.146 0.032 0.3620569389 powell nthiter 3: fret = 0.362057 244 0.110 -0.101 0.107 -0.145 -0.146 0.017 0.3620351778 246 0.110 -0.101 0.107 -0.145 -0.146 0.014 0.3620351206 258 0.110 -0.102 0.107 -0.145 -0.146 0.013 0.3620348384 267 0.110 -0.102 0.120 -0.145 -0.146 0.013 0.3620107485 268 0.110 -0.102 0.118 -0.145 -0.146 0.013 0.3620087082 269 0.110 -0.102 0.116 -0.145 -0.146 0.013 0.3620075587 280 0.110 -0.102 0.116 -0.142 -0.146 0.013 0.3620017864 281 0.110 -0.102 0.116 -0.141 -0.146 0.013 0.3620016451 291 0.110 -0.102 0.116 -0.141 -0.145 0.013 0.3620009838 292 0.110 -0.102 0.116 -0.141 -0.144 0.013 0.3620007329 301 0.120 -0.108 0.119 -0.145 -0.151 0.019 0.3619991985 302 0.116 -0.105 0.118 -0.143 -0.148 0.017 0.3619973594 303 0.116 -0.105 0.118 -0.143 -0.148 0.017 0.3619973353 304 0.115 -0.105 0.118 -0.143 -0.148 0.017 0.3619972188 306 0.115 -0.104 0.118 -0.143 -0.147 0.016 0.3619970985 308 0.115 -0.105 0.118 -0.143 -0.148 0.016 0.3619970335 powell nthiter 4: fret = 0.361997 318 0.115 -0.105 0.118 -0.143 -0.148 0.015 0.3619952096 319 0.115 -0.105 0.118 -0.143 -0.148 0.011 0.3619908234 329 0.115 -0.103 0.118 -0.143 -0.148 0.011 0.3619879024 331 0.115 -0.101 0.118 -0.143 -0.148 0.011 0.3619861301 341 0.115 -0.101 0.116 -0.143 -0.148 0.011 0.3619852705 351 0.115 -0.101 0.116 -0.141 -0.148 0.011 0.3619833261 352 0.115 -0.101 0.116 -0.140 -0.148 0.011 0.3619829842 370 0.126 -0.108 0.119 -0.145 -0.156 0.017 0.3619790147 371 0.123 -0.106 0.118 -0.144 -0.153 0.016 0.3619788039 372 0.124 -0.107 0.118 -0.144 -0.154 0.016 0.3619785915 374 0.124 -0.107 0.118 -0.144 -0.154 0.016 0.3619785563 376 0.132 -0.109 0.119 -0.145 -0.161 0.016 0.3619593407 379 0.146 -0.113 0.119 -0.147 -0.171 0.016 0.3619465152 382 0.141 -0.112 0.119 -0.146 -0.167 0.016 0.3619424083 384 0.142 -0.112 0.119 -0.147 -0.168 0.016 0.3619421203 powell nthiter 5: fret = 0.361942 399 0.139 -0.110 0.118 -0.145 -0.166 0.014 0.3619410154 400 0.140 -0.110 0.118 -0.145 -0.166 0.014 0.3619409681 402 0.139 -0.110 0.118 -0.145 -0.166 0.014 0.3619409507 403 0.139 -0.110 0.118 -0.145 -0.166 0.014 0.3619409436 410 0.139 -0.106 0.118 -0.145 -0.166 0.014 0.3619316430 411 0.139 -0.101 0.118 -0.145 -0.166 0.014 0.3619299323 412 0.139 -0.103 0.118 -0.145 -0.166 0.014 0.3619291232 421 0.139 -0.103 0.122 -0.145 -0.166 0.014 0.3619189623 423 0.139 -0.103 0.125 -0.145 -0.166 0.014 0.3619162156 442 0.139 -0.103 0.125 -0.145 -0.167 0.014 0.3619123790 443 0.139 -0.103 0.125 -0.145 -0.172 0.014 0.3619040987 453 0.140 -0.103 0.125 -0.145 -0.172 0.014 0.3619038687 454 0.140 -0.103 0.125 -0.145 -0.172 0.014 0.3619037875 458 0.140 -0.103 0.125 -0.145 -0.172 0.014 0.3619037315 powell nthiter 6: fret = 0.361904 471 0.139 -0.102 0.125 -0.145 -0.171 0.013 0.3619035757 473 0.140 -0.103 0.125 -0.145 -0.172 0.014 0.3619035110 485 0.140 -0.101 0.125 -0.145 -0.172 0.014 0.3619033882 488 0.140 -0.102 0.125 -0.145 -0.172 0.014 0.3619031473 498 0.140 -0.102 0.127 -0.145 -0.172 0.014 0.3619025168 525 0.140 -0.102 0.127 -0.145 -0.172 0.014 0.3619024137 powell nthiter 7: fret = 0.361902 543 0.140 -0.102 0.127 -0.145 -0.172 0.014 0.3619023877 powell nthiter 8: fret = 0.361902 607 0.140 -0.102 0.127 -0.145 -0.172 0.014 0.3619023117 powell nthiter 9: fret = 0.361902 Powell done niters = 9 Computing relative cost 0 -25.0 -25.0 -25.0 0.979401 1 -25.0 -25.0 25.0 0.988936 2 -25.0 25.0 -25.0 0.968920 3 -25.0 25.0 25.0 0.987947 4 25.0 -25.0 -25.0 0.990699 5 25.0 -25.0 25.0 0.971559 6 25.0 25.0 -25.0 0.966062 7 25.0 25.0 25.0 0.983863 REL: 8 0.361902 7.837386 0.979673 rel = 0.369411 Number of iterations 9 Min cost was 0.361902 Number of FunctionCalls 728 TolPowell 0.000000 nMaxItersPowell 36 OptimizationTime 16.568000 sec Parameters at optimum (transmm) 0.14017 -0.10189 0.12676 Parameters at optimum (rotdeg) -0.14533 -0.17226 0.01384 Final costs ---------------- Number of surface hits 201990 WM Intensity 1675.2839 +/- 591.7511 Ctx Intensity 2191.2318 +/- 827.2150 Pct Contrast 25.0928 +/- 31.4411 Cost 0.3619 RelCost 0.3738 Reg at min cost was 0.99903 -0.00825 0.04319 1.48314; -0.04372 -0.29060 0.95585 -0.75595; 0.00467 -0.95681 -0.29068 2.50543; 0.00000 0.00000 0.00000 1.00000; Writing optimal reg to ./tracula/dmri/xfms/anatorig2diff.bbr.dat, type = 14 Original Reg 0.99903 -0.01119 0.04254 1.34996; -0.04396 -0.28817 0.95657 -0.66041; 0.00155 -0.95751 -0.28838 2.37296; 0.00000 0.00000 0.00000 1.00000; Original Reg - Optimal Reg -0.00000 -0.00295 -0.00064 -0.13318; -0.00025 0.00243 0.00072 0.09554; -0.00312 -0.00070 0.00230 -0.13247; 0.00000 0.00000 0.00000 0.00000; Computing change in lh position LH rmsDiffMean 0.165951 Computing change in rh position Surface-RMS-Diff-mm 0.204479 0.100417 0.448749 mri_segreg done MinCost: 0.361902 1675.283867 2191.231806 25.092824 tkregister2_cmdl --mov ./tracula/dmri/dwi.nii.gz --reg ./tracula/dmri/xfms/anatorig2diff.bbr.dat --noedit --fslregout ./tracula/dmri/xfms/diff2anatorig.bbr.mat tkregister_tcl /usr/local/freesurfer/tktools/tkregister2.tcl INFO: no target volume specified, assuming FreeSurfer orig volume. target volume orig movable volume ./tracula/dmri/dwi.nii.gz reg file ./tracula/dmri/xfms/anatorig2diff.bbr.dat LoadVol 0 ZeroCRAS 0 $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ Diagnostic Level -1 ---- Input registration matrix -------- 0.99903 -0.00825 0.04319 1.48314; -0.04372 -0.29060 0.95585 -0.75595; 0.00467 -0.95681 -0.29068 2.50543; 0.00000 0.00000 0.00000 1.00000; float2int = 0 --------------------------------------- INFO: loading target /home/michele/spd_processing/tracula/mri/orig.mgz Ttarg: -------------------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; INFO: loading movable ./tracula/dmri/dwi.nii.gz Tmov: -------------------- -2.00000 0.00000 0.00000 120.00000; 0.00000 0.00000 2.00000 -80.00000; 0.00000 -2.00000 0.00000 120.00000; 0.00000 0.00000 0.00000 1.00000; mkheaderreg = 0, float2int = 0 ---- Input registration matrix -------- 0.99903 -0.00825 0.04319 1.48314; -0.04372 -0.29060 0.95585 -0.75595; 0.00467 -0.95681 -0.29068 2.50543; 0.00000 0.00000 0.00000 1.00000; Determinant 1 subject = tracula RegMat --------------------------- 0.99903 -0.00825 0.04319 1.48314; -0.04372 -0.29060 0.95585 -0.75595; 0.00467 -0.95681 -0.29068 2.50543; 0.00000 0.00000 0.00000 1.00000; FSLOUTPUTTYPE NIFTI_GZ tkreg2FSL: mov det = -8, ref det = -1 Cleaning up Started at Fri Nov 6 10:09:48 UTC 2020 Ended at Fri Nov 6 10:10:36 UTC 2020 BBR-Run-Time-Sec 48 bbregister Done To check results, run: tkregisterfv --mov ./tracula/dmri/dwi.nii.gz --reg ./tracula/dmri/xfms/anatorig2diff.bbr.dat --surfs convert_xfm -omat ./tracula/dmri/xfms/anatorig2diff.bbr.mat -inverse ./tracula/dmri/xfms/diff2anatorig.bbr.mat convert_xfm -omat ./tracula/dmri/xfms/anat2diff.bbr.mat -concat ./tracula/dmri/xfms/anatorig2diff.bbr.mat ./tracula/dmri/xfms/anat2anatorig.mat convert_xfm -omat ./tracula/dmri/xfms/diff2anat.bbr.mat -inverse ./tracula/dmri/xfms/anat2diff.bbr.mat #------------------------------------- #@# Inter-subject registration Fri Nov 6 10:10:36 UTC 2020 flirt -in ./tracula/dmri/brain_anat.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/brain_anat_mni.nii.gz -omat ./tracula/dmri/xfms/anat2mni.mat -cost mutualinfo convert_xfm -omat ./tracula/dmri/xfms/mni2anat.mat -inverse ./tracula/dmri/xfms/anat2mni.mat convert_xfm -omat ./tracula/dmri/xfms/diff2mni.bbr.mat -concat ./tracula/dmri/xfms/anat2mni.mat ./tracula/dmri/xfms/diff2anat.bbr.mat convert_xfm -omat ./tracula/dmri/xfms/mni2diff.bbr.mat -inverse ./tracula/dmri/xfms/diff2mni.bbr.mat convert_xfm -omat ./tracula/dmri/xfms/anatorig2mni.mat -concat ./tracula/dmri/xfms/anat2mni.mat ./tracula/dmri/xfms/anatorig2anat.mat convert_xfm -omat ./tracula/dmri/xfms/mni2anatorig.mat -inverse ./tracula/dmri/xfms/anatorig2mni.mat #------------------------------------- #@# Masks Fri Nov 6 10:15:28 UTC 2020 mri_binarize --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o ./tracula/dlabel/anatorig/White-Matter.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --o ./tracula/dlabel/anatorig/White-Matter.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/White-Matter.nii.gz Binarizing based on matching values nMatch 5 0 2 1 7 2 41 3 46 4 77 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 306606 values in range Counting number of voxels in first frame Found 306606 voxels in final mask Count: 306606 306606.000000 16777216 1.827514 mri_binarize done mri_binarize --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o ./tracula/dlabel/anatorig/White-Matter++.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 2 --match 7 --match 41 --match 46 --match 77 --match 28 --match 60 --match 16 --o ./tracula/dlabel/anatorig/White-Matter++.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/White-Matter++.nii.gz Binarizing based on matching values nMatch 8 0 2 1 7 2 41 3 46 4 77 5 28 6 60 7 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 329385 values in range Counting number of voxels in first frame Found 329385 voxels in final mask Count: 329385 329385.000000 16777216 1.963288 mri_binarize done mri_binarize --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o ./tracula/dlabel/anatorig/notventricles.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 4 --match 43 --binval 0 --binvalnot 1 --o ./tracula/dlabel/anatorig/notventricles.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/notventricles.nii.gz Binarizing based on matching values nMatch 2 0 4 1 43 binval 0 binvalnot 1 fstart = 0, fend = 0, nframes = 1 Found 42501 values in range Counting number of voxels in first frame Found 42501 voxels in final mask Count: 42501 42501.000000 16777216 0.253326 mri_binarize done mri_aparc2aseg --s tracula --annot aparc --wmparc-dmax 2 --labelwm --hypo-as-wm --o ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz SUBJECTS_DIR /home/michele/spd_processing subject tracula outvol ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz useribbon 0 baseoffset 0 labeling wm labeling hypo-intensities as wm dmaxctx 2.000000 RipUnknown 0 Reading lh white surface /home/michele/spd_processing/tracula/surf/lh.white Reading lh pial surface /home/michele/spd_processing/tracula/surf/lh.pial Loading lh annotations from /home/michele/spd_processing/tracula/label/lh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Reading rh white surface /home/michele/spd_processing/tracula/surf/rh.white Reading rh pial surface /home/michele/spd_processing/tracula/surf/rh.pial Loading rh annotations from /home/michele/spd_processing/tracula/label/rh.aparc.annot reading colortable from annotation file... colortable with 36 entries read (originally /autofs/space/tanha_002/users/greve/fsdev.build/average/colortable_desikan_killiany.txt) Have color table for lh white annotation Have color table for rh white annotation Loading ribbon segmentation from /home/michele/spd_processing/tracula/mri/ribbon.mgz Loading filled from /home/michele/spd_processing/tracula/mri/ribbon.mgz Building hash of lh white Building hash of lh pial Building hash of rh white Building hash of rh pial Loading aseg from /home/michele/spd_processing/tracula/mri/aseg.mgz ASeg Vox2RAS: ----------- -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; ------------------------- Labeling Slice 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 nctx = 667168 Used brute-force search on 0 voxels Fixing Parahip LH WM Found 3 clusters 0 k 1.000000 1 k 1.000000 2 k 675.000000 Fixing Parahip RH WM Found 4 clusters 0 k 1.000000 1 k 2.000000 2 k 1.000000 3 k 690.000000 Writing output aseg to ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz mri_binarize --i ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o ./tracula/dlabel/anatorig/cortex.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 2999 --o ./tracula/dlabel/anatorig/cortex.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/cortex.nii.gz Binarizing based on threshold min 1000 max 2999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 377817 values in range Counting number of voxels in first frame Found 377817 voxels in final mask Count: 377817 377817.000000 16777216 2.251965 mri_binarize done mri_binarize --i ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o ./tracula/dlabel/anatorig/cortex+2mm.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz --min 1000 --max 4999 --o ./tracula/dlabel/anatorig/cortex+2mm.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/cortex+2mm.nii.gz Binarizing based on threshold min 1000 max 4999 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 571293 values in range Counting number of voxels in first frame Found 571293 voxels in final mask Count: 571293 571293.000000 16777216 3.405172 mri_binarize done mri_binarize --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 16 --o ./tracula/dlabel/anatorig/Brain-Stem.nii.gz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/michele/spd_processing cmdline mri_binarize.bin --i /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz --match 16 --o ./tracula/dlabel/anatorig/Brain-Stem.nii.gz sysname Linux hostname ian-System-Product-Name machine x86_64 user michele input /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz frame 0 nErode3d 0 nErode2d 0 output ./tracula/dlabel/anatorig/Brain-Stem.nii.gz Binarizing based on matching values nMatch 1 0 16 binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16802 values in range Counting number of voxels in first frame Found 16802 voxels in final mask Count: 16802 16802.000000 16777216 0.100148 mri_binarize done fslmaths ./tracula/dlabel/anatorig/cortex+2mm.nii.gz -add ./tracula/dlabel/anatorig/Brain-Stem.nii.gz ./tracula/dlabel/anatorig/cortex+2mm+bs.nii.gz mri_convert /home/michele/spd_processing/tracula/mri/brainmask.mgz ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz mri_convert.bin /home/michele/spd_processing/tracula/mri/brainmask.mgz ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/michele/spd_processing/tracula/mri/brainmask.mgz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) writing to ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz... fslmaths ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz -mul ./tracula/dlabel/anatorig/notventricles.nii.gz ./tracula/dlabel/anatorig/anat_brain_mask-vent.nii.gz mri_convert /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz ./tracula/dlabel/anatorig/aparc+aseg.nii.gz mri_convert.bin /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz ./tracula/dlabel/anatorig/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/michele/spd_processing/tracula/mri/aparc+aseg.mgz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) writing to ./tracula/dlabel/anatorig/aparc+aseg.nii.gz... fslmaths ./tracula/dlabel/anatorig/aparc+aseg.nii.gz -dilM -bin ./tracula/dlabel/anatorig/aparc+aseg_mask.nii.gz orientLAS ./tracula/dlabel/anatorig/White-Matter.nii.gz ./tracula/dlabel/anat/White-Matter.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/White-Matter.nii.gz ./tracula/dlabel/anat/White-Matter.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/White-Matter.nii.gz ./tracula/dlabel/anat/White-Matter.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/White-Matter.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/White-Matter.nii.gz... flirt -in ./tracula/dlabel/anat/White-Matter.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/White-Matter.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/White-Matter.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/White-Matter.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/White-Matter++.nii.gz ./tracula/dlabel/anat/White-Matter++.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/White-Matter++.nii.gz ./tracula/dlabel/anat/White-Matter++.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/White-Matter++.nii.gz ./tracula/dlabel/anat/White-Matter++.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/White-Matter++.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/White-Matter++.nii.gz... flirt -in ./tracula/dlabel/anat/White-Matter++.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/White-Matter++.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/White-Matter++.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/White-Matter++.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/notventricles.nii.gz ./tracula/dlabel/anat/notventricles.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/notventricles.nii.gz ./tracula/dlabel/anat/notventricles.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/notventricles.nii.gz ./tracula/dlabel/anat/notventricles.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/notventricles.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/notventricles.nii.gz... flirt -in ./tracula/dlabel/anat/notventricles.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/notventricles.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/notventricles.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/notventricles.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/cortex.nii.gz ./tracula/dlabel/anat/cortex.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex.nii.gz ./tracula/dlabel/anat/cortex.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex.nii.gz ./tracula/dlabel/anat/cortex.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/cortex.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/cortex.nii.gz... flirt -in ./tracula/dlabel/anat/cortex.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/cortex.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/cortex.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/cortex.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/cortex+2mm.nii.gz ./tracula/dlabel/anat/cortex+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex+2mm.nii.gz ./tracula/dlabel/anat/cortex+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex+2mm.nii.gz ./tracula/dlabel/anat/cortex+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/cortex+2mm.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/cortex+2mm.nii.gz... flirt -in ./tracula/dlabel/anat/cortex+2mm.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/cortex+2mm.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/cortex+2mm.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/cortex+2mm.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/cortex+2mm+bs.nii.gz ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex+2mm+bs.nii.gz ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/cortex+2mm+bs.nii.gz ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/cortex+2mm+bs.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz... flirt -in ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/cortex+2mm+bs.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/cortex+2mm+bs.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/cortex+2mm+bs.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/aparc+aseg.nii.gz ./tracula/dlabel/anat/aparc+aseg.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg.nii.gz ./tracula/dlabel/anat/aparc+aseg.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg.nii.gz ./tracula/dlabel/anat/aparc+aseg.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/aparc+aseg.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/aparc+aseg.nii.gz... flirt -in ./tracula/dlabel/anat/aparc+aseg.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/aparc+aseg.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/aparc+aseg.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/aparc+aseg.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/aparc+aseg+2mm.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz... flirt -in ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/aparc+aseg+2mm.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/aparc+aseg+2mm.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/aparc+aseg+2mm.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/aparc+aseg_mask.nii.gz ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg_mask.nii.gz ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/aparc+aseg_mask.nii.gz ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/aparc+aseg_mask.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz... flirt -in ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/aparc+aseg_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/aparc+aseg_mask.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz ./tracula/dlabel/anat/anat_brain_mask.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz ./tracula/dlabel/anat/anat_brain_mask.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz ./tracula/dlabel/anat/anat_brain_mask.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/anat_brain_mask.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/anat_brain_mask.nii.gz... flirt -in ./tracula/dlabel/anat/anat_brain_mask.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/anat_brain_mask.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/anat_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/anat_brain_mask.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour orientLAS ./tracula/dlabel/anatorig/anat_brain_mask-vent.nii.gz ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz INFO: input image orientation is LIA INFO: input image determinant is -1 mri_convert -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/anat_brain_mask-vent.nii.gz ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz mri_convert.bin -oni 256 -onj 256 -onk 256 -oid -1 0 0 -ojd 0 1 0 -okd 0 -2.98023e-08 1 -oc 0.865662 2.10047 14.8833 -rt nearest ./tracula/dlabel/anatorig/anat_brain_mask-vent.nii.gz ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tracula/dlabel/anatorig/anat_brain_mask-vent.nii.gz... TR=7.51, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 2.98023e-08, -1) k_ras = (0, 1, 0) Reslicing using nearest writing to ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz... flirt -in ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz -ref ./tracula/dmri/lowb.nii.gz -out ./tracula/dlabel/diff/anat_brain_mask-vent.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2diff.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/anat/anat_brain_mask-vent.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/anat_brain_mask-vent.nii.gz -applyxfm -init ./tracula/dmri/xfms/anat2mni.mat -interp nearestneighbour fslstats -t ./tracula/dmri/dwi.nii.gz -k ./tracula/dlabel/diff/White-Matter++.bbr.nii.gz -m -s | awk '{print $1/$2}' > ./tracula/dmri/dwi_snr.txt flirt -in ./tracula/dlabel/diff/lowb_brain_mask.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dlabel/mni/lowb_brain_mask.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat -interp nearestneighbour flirt -in ./tracula/dlabel/diff/lowb_brain_mask.nii.gz -ref ./tracula/dmri/brain_anat_orig.nii.gz -out ./tracula/dlabel/anatorig/lowb_brain_mask.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2anatorig.bbr.mat -interp nearestneighbour ln -sf ./tracula/dlabel/diff/aparc+aseg_mask.bbr.nii.gz ./tracula/dmri/nodif_brain_mask.nii.gz #------------------------------------- #@# Tensor fit Fri Nov 6 10:17:21 UTC 2020 dtifit -k ./tracula/dmri/dwi.nii.gz -m ./tracula/dlabel/diff/aparc+aseg_mask.bbr.nii.gz -r ./tracula/dmri/bvecs -b ./tracula/dmri/bvals -o ./tracula/dmri/dtifit 0 120 0 120 0 80 0 slices processed 1 slices processed 2 slices processed 3 slices processed 4 slices processed 5 slices processed 6 slices processed 7 slices processed 8 slices processed 9 slices processed 10 slices processed 11 slices processed 12 slices processed 13 slices processed 14 slices processed 15 slices processed 16 slices processed 17 slices processed 18 slices processed 19 slices processed 20 slices processed 21 slices processed 22 slices processed 23 slices processed 24 slices processed 25 slices processed 26 slices processed 27 slices processed 28 slices processed 29 slices processed 30 slices processed 31 slices processed 32 slices processed 33 slices processed 34 slices processed 35 slices processed 36 slices processed 37 slices processed 38 slices processed 39 slices processed 40 slices processed 41 slices processed 42 slices processed 43 slices processed 44 slices processed 45 slices processed 46 slices processed 47 slices processed 48 slices processed 49 slices processed 50 slices processed 51 slices processed 52 slices processed 53 slices processed 54 slices processed 55 slices processed 56 slices processed 57 slices processed 58 slices processed 59 slices processed 60 slices processed 61 slices processed 62 slices processed 63 slices processed 64 slices processed 65 slices processed 66 slices processed 67 slices processed 68 slices processed 69 slices processed 70 slices processed 71 slices processed 72 slices processed 73 slices processed 74 slices processed 75 slices processed 76 slices processed 77 slices processed 78 slices processed 79 slices processed flirt -in ./tracula/dmri/dtifit_FA.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_FA.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_L1.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_L1.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_L2.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_L2.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_L3.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_L3.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_MD.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_MD.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_MO.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_MO.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat flirt -in ./tracula/dmri/dtifit_S0.nii.gz -ref /usr/local/fsl/data/standard/MNI152_T1_1mm_brain.nii.gz -out ./tracula/dmri/mni/dtifit_S0.bbr.nii.gz -applyxfm -init ./tracula/dmri/xfms/diff2mni.bbr.mat #------------------------------------- #@# Priors Fri Nov 6 10:17:28 UTC 2020 /usr/local/freesurfer/bin/dmri_train --outdir ./tracula/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.tracula.5765.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask ./tracula/dlabel/mni/aparc+aseg_mask.nii.gz --fa ./tracula/dmri/dtifit_FA.nii.gz --cptdir ./tracula/dlabel/diff --reg ./tracula/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc cwd /home/michele/spd_processing cmdline /usr/local/freesurfer/bin/dmri_train --outdir ./tracula/dlabel/mni --out lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr --slist /tmp/subj33.tracula.5765.txt --trk dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk --seg dlabel/mni/aparc+aseg.nii.gz --cmask dlabel/mni/cortex+2mm.nii.gz --lmask 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 --rois dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz --bmask ./tracula/dlabel/mni/aparc+aseg_mask.nii.gz --fa ./tracula/dmri/dtifit_FA.nii.gz --cptdir ./tracula/dlabel/diff --reg ./tracula/dmri/xfms/mni2diff.bbr.mat --ncpts 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 --trunc sysname Linux hostname ian-System-Product-Name machine x86_64 user michele Output directory: /home/michele/spd_processing/tracula/dlabel/mni Output directory in test subject's space: /home/michele/spd_processing/tracula/dlabel/diff Output base: lh.cst_AS_avg33_mni_bbr rh.cst_AS_avg33_mni_bbr lh.ilf_AS_avg33_mni_bbr rh.ilf_AS_avg33_mni_bbr lh.unc_AS_avg33_mni_bbr rh.unc_AS_avg33_mni_bbr fmajor_PP_avg33_mni_bbr fminor_PP_avg33_mni_bbr lh.atr_PP_avg33_mni_bbr rh.atr_PP_avg33_mni_bbr lh.ccg_PP_avg33_mni_bbr rh.ccg_PP_avg33_mni_bbr lh.cab_PP_avg33_mni_bbr rh.cab_PP_avg33_mni_bbr lh.slfp_PP_avg33_mni_bbr rh.slfp_PP_avg33_mni_bbr lh.slft_PP_avg33_mni_bbr rh.slft_PP_avg33_mni_bbr Training subject directory list: /tmp/subj33.tracula.5765.txt Location of streamline files relative to base: dlabel/mni/lh.cst_AS.bbr.trk dlabel/mni/rh.cst_AS.bbr.trk dlabel/mni/lh.ilf_AS.bbr.trk dlabel/mni/rh.ilf_AS.bbr.trk dlabel/mni/lh.unc_AS.bbr.trk dlabel/mni/rh.unc_AS.bbr.trk dlabel/mni/fmajor_PP.bbr.trk dlabel/mni/fminor_PP.bbr.trk dlabel/mni/lh.atr_PP.bbr.trk dlabel/mni/rh.atr_PP.bbr.trk dlabel/mni/lh.ccg_PP.bbr.trk dlabel/mni/rh.ccg_PP.bbr.trk dlabel/mni/lh.cab_PP.bbr.trk dlabel/mni/rh.cab_PP.bbr.trk dlabel/mni/lh.slfp_PP.bbr.trk dlabel/mni/rh.slfp_PP.bbr.trk dlabel/mni/lh.slft_PP.bbr.trk dlabel/mni/rh.slft_PP.bbr.trk Location of start ROI files relative to base: dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz dlabel/mni/fmajor_PP_roi1.bbr.nii.gz dlabel/mni/fminor_PP_roi1.bbr.nii.gz dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Location of end ROI files relative to base: dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz dlabel/mni/fmajor_PP_roi2.bbr.nii.gz dlabel/mni/fminor_PP_roi2.bbr.nii.gz dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Location of cortex masks relative to base: dlabel/mni/cortex+2mm.nii.gz Label ID's from aparc+aseg to add to cortex mask: 16 16 0 0 0 0 0 0 10 49 0 0 0 0 0 0 0 0 Location of aparc+aseg's relative to base: dlabel/mni/aparc+aseg.nii.gz Brain mask for output subject: /home/michele/spd_processing/tracula/dlabel/mni/aparc+aseg_mask.nii.gz FA map for output subject: /home/michele/spd_processing/tracula/dmri/dtifit_FA.nii.gz Affine registration from atlas to base for output subject: /home/michele/spd_processing/tracula/dmri/xfms/mni2diff.bbr.mat Number of control points for initial spline: 6 6 5 5 5 5 7 5 5 5 5 5 4 4 5 5 5 5 Exclude previously chosen center streamlines: 0 Use truncated streamlines: 1 Loading brain mask of output subject from /home/michele/spd_processing/tracula/dlabel/mni/aparc+aseg_mask.nii.gz Loading FA map of output subject from /home/michele/spd_processing/tracula/dmri/dtifit_FA.nii.gz Loading affine registration from /home/michele/spd_processing/tracula/dmri/xfms/mni2diff.bbr.mat Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cst_AS.bbr.trk INFO: Rejected 2820 streamlines for straying off mask INFO: Rejected 53 streamlines for reversing direction INFO: Rejected 16 streamlines as length outliers INFO: Have 5543 total streamlines (min/mean/max length: 56/96/129) Loading segmentation from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/cortex+2mm.nii.gz Loading segmentation from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/aparc+aseg.nii.gz Loading cortex mask from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/cortex+2mm.nii.gz Processing pathway 1 of 18... Matching streamline ends INFO: Have 3242 non-truncated streamlines (min/mean/max length: 59/97/130) INFO: Center of mass of start points: (98+/-3, 99+/-6, 40+/-11) INFO: Center of mass of midpoints: (112+/-3, 110+/-4, 78+/-6) INFO: Center of mass of end points: (112+/-8, 107+/-10, 140+/-7) INFO: Split streamlines into 26 segments Computing path histograms INFO: Total streamline volume is 34038 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0352231 INFO: Points where local peeks in curvature occur are 100 105 53 (curv = 0.0404002) 110 111 69 (curv = 0.0527136) 116 113 92 (curv = 0.0504466) 116 112 102 (curv = 0.054241) 112 106 123 (curv = 0.112604) 111 111 130 (curv = 0.057923) INFO: Intermediate dominant points are 99 98 37 100 105 53 110 111 69 116 112 102 112 106 123 112 115 141 INFO: Final dominant points are 99 98 37 100 105 53 110 111 69 116 112 102 112 106 123 112 115 141 INFO: Selected control points are 99 98 37 100 105 54 110 111 70 116 112 101 111 106 122 112 115 141 INFO: Distances between consecutive points are 18 20 32 22 21 INFO: Selected control points in test subject's space are 62 58 23 63 58 31 68 58 39 72 54 51 70 48 59 71 49 68 INFO: Distances between consecutive points in test subject's space are 8 9 13 10 9 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 20.637 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cst_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cst_AS.bbr.trk INFO: Rejected 2239 streamlines for straying off mask INFO: Rejected 80 streamlines for reversing direction INFO: Rejected 31 streamlines as length outliers INFO: Have 6946 total streamlines (min/mean/max length: 58/98/141) Processing pathway 2 of 18... Matching streamline ends INFO: Have 4076 non-truncated streamlines (min/mean/max length: 58/98/141) INFO: Center of mass of start points: (82+/-3, 97+/-6, 40+/-14) INFO: Center of mass of midpoints: (68+/-3, 110+/-4, 79+/-7) INFO: Center of mass of end points: (68+/-7, 105+/-11, 140+/-7) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 41523 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 112 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0423743 INFO: Points where local peeks in curvature occur are 80 99 57 (curv = 0.0651307) 78 102 62 (curv = 0.0519895) 74 108 67 (curv = 0.0653882) 69 110 76 (curv = 0.0721295) 64 108 114 (curv = 0.0577516) 65 101 126 (curv = 0.0909656) INFO: Intermediate dominant points are 82 98 27 80 97 50 69 110 76 66 109 94 65 101 126 65 107 141 INFO: Final dominant points are 82 98 27 77 106 65 69 110 76 64 108 114 65 101 126 65 107 141 WARN: Defaulting to equidistant control points INFO: Selected control points are 82 98 27 80 97 49 72 109 70 66 109 92 65 107 117 65 107 141 INFO: Distances between consecutive points are 22 25 23 25 24 INFO: Selected control points in test subject's space are 54 59 20 54 55 28 51 57 39 49 53 48 49 49 57 49 45 67 INFO: Distances between consecutive points in test subject's space are 9 12 10 10 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 114 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0403976 INFO: Points where local peeks in curvature occur are 80 99 58 (curv = 0.0692144) 74 108 67 (curv = 0.0606058) 70 110 74 (curv = 0.0583028) 64 112 99 (curv = 0.0497754) 65 110 113 (curv = 0.0657637) 65 101 127 (curv = 0.117699) INFO: Intermediate dominant points are 82 98 27 80 99 58 70 110 74 65 111 95 65 101 127 65 107 141 INFO: Final dominant points are 82 98 27 80 99 58 70 110 74 65 108 115 65 101 127 65 107 141 WARN: Defaulting to equidistant control points INFO: Selected control points are 82 98 27 80 97 50 71 110 71 66 111 93 65 108 115 65 107 141 INFO: Distances between consecutive points are 23 26 23 22 26 INFO: Selected control points in test subject's space are 54 59 20 54 55 29 50 57 39 49 54 48 49 49 57 49 45 67 INFO: Distances between consecutive points in test subject's space are 10 11 10 10 11 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 114 voxels Selecting 6 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0390857 INFO: Points where local peeks in curvature occur are 81 94 43 (curv = 0.0600003) 80 99 58 (curv = 0.0736683) 76 108 66 (curv = 0.0831295) 69 110 75 (curv = 0.0837899) 65 107 115 (curv = 0.0633866) 65 101 125 (curv = 0.0979673) INFO: Intermediate dominant points are 81 97 28 81 94 43 69 110 75 66 109 96 65 101 125 65 106 142 INFO: Final dominant points are 81 97 28 81 94 43 69 110 75 65 108 114 65 101 125 65 106 142 INFO: Selected control points are 81 97 28 82 94 45 70 109 76 64 107 113 66 101 125 65 106 142 INFO: Distances between consecutive points are 17 36 38 14 18 INFO: Selected control points in test subject's space are 54 58 20 55 54 26 50 56 41 48 49 56 50 45 60 49 44 67 INFO: Distances between consecutive points in test subject's space are 7 16 17 6 7 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.cst_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.cst_AS_avg33_mni_bbr_cpts_6.nii.gz Done in 33.046 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ilf_AS.bbr.trk INFO: Rejected 261 streamlines for straying off mask INFO: Rejected 24 streamlines for reversing direction INFO: Rejected 22 streamlines as length outliers INFO: Have 3301 total streamlines (min/mean/max length: 53/90/143) Processing pathway 3 of 18... Matching streamline ends INFO: Have 1383 non-truncated streamlines (min/mean/max length: 53/97/143) INFO: Center of mass of start points: (134+/-7, 136+/-5, 41+/-9) INFO: Center of mass of midpoints: (133+/-4, 103+/-3, 59+/-4) INFO: Center of mass of end points: (114+/-13, 47+/-12, 70+/-14) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 36106 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.032025 INFO: Points where local peeks in curvature occur are 132 117 53 (curv = 0.060036) 134 109 56 (curv = 0.0410491) 135 95 59 (curv = 0.0780916) 126 76 69 (curv = 0.0630608) 120 60 69 (curv = 0.0507169) INFO: Intermediate dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Final dominant points are 136 136 36 132 117 53 135 95 59 126 76 69 109 48 69 INFO: Selected control points are 136 136 36 132 117 54 134 95 59 127 76 68 109 48 69 INFO: Distances between consecutive points are 26 23 22 33 INFO: Selected control points in test subject's space are 79 75 28 78 64 33 79 54 32 76 44 32 69 31 29 INFO: Distances between consecutive points in test subject's space are 12 10 10 15 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 8.176 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ilf_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ilf_AS.bbr.trk INFO: Rejected 105 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2035 total streamlines (min/mean/max length: 51/92/133) Processing pathway 4 of 18... Matching streamline ends INFO: Have 924 non-truncated streamlines (min/mean/max length: 57/100/124) INFO: Center of mass of start points: (47+/-8, 140+/-6, 41+/-9) INFO: Center of mass of midpoints: (47+/-3, 105+/-2, 57+/-4) INFO: Center of mass of end points: (65+/-12, 46+/-11, 72+/-11) INFO: Split streamlines into 25 segments Computing path histograms INFO: Total streamline volume is 27044 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 104 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0369794 INFO: Points where local peeks in curvature occur are 46 119 49 (curv = 0.0524572) 48 113 55 (curv = 0.0452764) 48 107 58 (curv = 0.0640623) 47 94 61 (curv = 0.0696708) 59 69 74 (curv = 0.0434269) INFO: Intermediate dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 INFO: Final dominant points are 42 137 39 46 119 49 47 94 61 59 69 74 70 42 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 137 39 48 113 55 49 87 65 62 61 75 70 42 62 INFO: Distances between consecutive points are 29 28 31 24 INFO: Selected control points in test subject's space are 36 73 31 39 60 33 40 48 34 47 35 34 51 29 26 INFO: Distances between consecutive points in test subject's space are 13 12 15 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0317225 INFO: Points where local peeks in curvature occur are 46 118 50 (curv = 0.0388051) 48 111 56 (curv = 0.0555527) 48 104 60 (curv = 0.0505194) 47 97 60 (curv = 0.0628071) 60 66 75 (curv = 0.0333833) INFO: Intermediate dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 INFO: Final dominant points are 41 137 39 46 118 50 47 97 60 60 66 75 71 41 64 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 137 39 48 112 56 49 87 66 61 63 75 71 41 64 INFO: Distances between consecutive points are 31 27 28 27 INFO: Selected control points in test subject's space are 35 73 31 39 60 34 40 48 34 46 36 34 51 29 26 INFO: Distances between consecutive points in test subject's space are 14 12 13 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 107 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 14 INFO: Minimum allowable curvature at a dominant point is 0.0281989 INFO: Points where local peeks in curvature occur are 46 124 49 (curv = 0.0525813) 47 86 64 (curv = 0.0457634) 55 75 71 (curv = 0.0579393) 59 65 73 (curv = 0.0398178) 67 57 74 (curv = 0.0410269) INFO: Intermediate dominant points are 46 146 43 46 124 49 45 97 60 55 75 71 76 42 76 INFO: Final dominant points are 46 146 43 46 124 49 46 90 62 55 75 71 76 42 76 WARN: Defaulting to equidistant control points INFO: Selected control points are 46 146 43 46 124 49 45 98 59 57 71 72 76 42 76 INFO: Distances between consecutive points are 23 28 32 35 INFO: Selected control points in test subject's space are 37 76 33 38 66 33 38 53 33 44 40 34 54 27 31 INFO: Distances between consecutive points in test subject's space are 10 13 14 17 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 103 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330161 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0477155) 47 123 49 (curv = 0.0487921) 45 116 52 (curv = 0.0594563) 46 109 56 (curv = 0.052095) 45 104 58 (curv = 0.0485911) 49 84 64 (curv = 0.0452784) 56 75 72 (curv = 0.0471211) INFO: Intermediate dominant points are 47 145 41 45 116 52 46 96 60 56 75 72 74 43 79 INFO: Final dominant points are 47 145 41 45 116 52 47 89 63 56 75 72 74 43 79 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 122 50 46 97 60 58 71 73 74 43 79 INFO: Distances between consecutive points are 25 27 31 33 INFO: Selected control points in test subject's space are 38 76 33 38 65 33 39 53 33 45 40 34 53 27 33 INFO: Distances between consecutive points in test subject's space are 11 12 14 15 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0297754 INFO: Points where local peeks in curvature occur are 48 130 43 (curv = 0.0481203) 47 123 49 (curv = 0.0496145) 45 116 52 (curv = 0.0553555) 46 109 56 (curv = 0.0439455) 47 88 63 (curv = 0.0344062) 56 73 72 (curv = 0.0399798) 59 66 73 (curv = 0.0363352) INFO: Intermediate dominant points are 47 145 41 45 116 52 45 98 59 56 73 72 75 46 75 INFO: Final dominant points are 47 145 41 45 116 52 47 88 63 56 73 72 75 46 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 47 145 41 47 123 49 45 99 59 56 73 72 75 46 75 INFO: Distances between consecutive points are 23 26 31 33 INFO: Selected control points in test subject's space are 38 76 33 38 66 32 38 54 33 44 41 34 53 29 31 INFO: Distances between consecutive points in test subject's space are 10 12 14 15 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 96 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0378734 INFO: Points where local peeks in curvature occur are 45 110 56 (curv = 0.0393051) 47 86 64 (curv = 0.0499122) 55 74 72 (curv = 0.0611631) 58 65 72 (curv = 0.0564798) 66 52 74 (curv = 0.195512) INFO: Intermediate dominant points are 43 135 37 45 110 56 46 87 63 55 74 72 61 51 62 INFO: Final dominant points are 43 135 37 45 110 56 47 85 64 55 74 72 61 51 62 WARN: Defaulting to equidistant control points INFO: Selected control points are 43 135 37 45 113 55 46 90 62 57 66 72 61 51 62 INFO: Distances between consecutive points are 28 24 28 18 INFO: Selected control points in test subject's space are 36 72 29 38 60 33 39 49 33 45 38 33 46 33 27 INFO: Distances between consecutive points in test subject's space are 13 11 13 8 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0330215 INFO: Points where local peeks in curvature occur are 47 130 47 (curv = 0.0693609) 49 116 57 (curv = 0.0845046) 48 109 57 (curv = 0.040301) 47 102 59 (curv = 0.0437753) 48 88 65 (curv = 0.053778) 57 67 72 (curv = 0.0353276) INFO: Intermediate dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 INFO: Final dominant points are 41 145 49 49 116 57 48 88 65 57 67 72 61 50 72 WARN: Defaulting to equidistant control points INFO: Selected control points are 41 145 49 48 122 53 47 99 60 54 76 70 61 50 72 INFO: Distances between consecutive points are 24 24 26 27 INFO: Selected control points in test subject's space are 35 75 36 39 64 34 39 54 33 43 42 34 47 31 31 INFO: Distances between consecutive points in test subject's space are 12 10 13 12 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 97 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0267388 INFO: Points where local peeks in curvature occur are 47 129 47 (curv = 0.0624221) 49 118 56 (curv = 0.0769472) 48 106 59 (curv = 0.0335264) 48 89 65 (curv = 0.0476719) 55 73 71 (curv = 0.0312977) INFO: Intermediate dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Final dominant points are 40 145 49 49 118 56 48 89 65 55 73 71 63 51 72 INFO: Selected control points are 40 145 49 49 117 54 48 90 66 55 73 71 63 51 72 INFO: Distances between consecutive points are 30 30 19 23 INFO: Selected control points in test subject's space are 35 75 36 40 62 34 40 49 34 43 41 34 48 31 31 INFO: Distances between consecutive points in test subject's space are 14 13 9 12 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.ilf_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 5.01 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.unc_AS.bbr.trk INFO: Rejected 1512 streamlines for straying off mask INFO: Rejected 23 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 3759 total streamlines (min/mean/max length: 8/56/103) Processing pathway 5 of 18... Matching streamline ends INFO: Have 2419 non-truncated streamlines (min/mean/max length: 8/54/98) INFO: Center of mass of start points: (129+/-7, 143+/-4, 42+/-5) INFO: Center of mass of midpoints: (126+/-2, 126+/-2, 55+/-3) INFO: Center of mass of end points: (115+/-10, 150+/-16, 59+/-5) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 19514 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 71 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0748054 INFO: Points where local peeks in curvature occur are 129 126 49 (curv = 0.143755) 126 126 56 (curv = 0.142004) 124 133 61 (curv = 0.100824) 109 150 60 (curv = 0.0845727) INFO: Intermediate dominant points are 131 144 44 129 126 49 124 133 61 109 150 60 111 166 60 INFO: Final dominant points are 131 144 44 129 126 49 124 133 61 109 150 60 111 166 60 WARN: Defaulting to equidistant control points INFO: Selected control points are 131 144 44 130 128 47 124 132 61 111 148 60 111 166 60 INFO: Distances between consecutive points are 16 16 21 18 INFO: Selected control points in test subject's space are 77 77 33 77 69 32 74 69 38 68 76 40 68 83 43 INFO: Distances between consecutive points in test subject's space are 8 7 9 8 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 68 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0689837 INFO: Points where local peeks in curvature occur are 126 124 54 (curv = 0.148395) 124 130 60 (curv = 0.100467) 109 153 61 (curv = 0.0751884) INFO: Intermediate dominant points are 125 145 40 126 124 54 123 133 61 109 153 61 107 166 56 INFO: Final dominant points are 125 145 40 126 124 54 114 144 59 109 153 61 107 166 56 WARN: Defaulting to equidistant dominant points INFO: Selected control points are 125 145 40 129 127 47 122 132 61 110 150 60 107 166 56 INFO: Distances between consecutive points are 20 16 22 17 INFO: Selected control points in test subject's space are 74 78 31 76 69 31 73 69 38 67 77 40 66 84 41 INFO: Distances between consecutive points in test subject's space are 9 8 10 7 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 7.339 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.unc_AS.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.unc_AS.bbr.trk INFO: Rejected 589 streamlines for straying off mask INFO: Rejected 109 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 6223 total streamlines (min/mean/max length: 8/62/103) Processing pathway 6 of 18... Matching streamline ends INFO: Have 4381 non-truncated streamlines (min/mean/max length: 8/61/103) INFO: Center of mass of start points: (53+/-6, 145+/-4, 41+/-5) INFO: Center of mass of midpoints: (55+/-2, 127+/-3, 55+/-3) INFO: Center of mass of end points: (71+/-8, 161+/-17, 57+/-4) INFO: Split streamlines into 10 segments Computing path histograms INFO: Total streamline volume is 23065 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 75 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0638711 INFO: Points where local peeks in curvature occur are 50 128 48 (curv = 0.124662) 57 128 57 (curv = 0.10243) 72 153 61 (curv = 0.105542) 74 157 58 (curv = 0.0646658) INFO: Intermediate dominant points are 49 148 46 50 128 48 62 138 60 72 153 61 76 176 55 INFO: Final dominant points are 49 148 46 50 128 48 66 142 60 72 153 61 76 176 55 WARN: Defaulting to equidistant control points INFO: Selected control points are 49 148 46 50 129 47 61 137 60 73 155 60 76 176 55 INFO: Distances between consecutive points are 19 19 22 22 INFO: Selected control points in test subject's space are 39 77 35 40 68 33 45 70 39 50 78 41 51 88 42 INFO: Distances between consecutive points in test subject's space are 9 8 10 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.068737 INFO: Points where local peeks in curvature occur are 53 132 45 (curv = 0.105475) 55 128 54 (curv = 0.13627) 72 151 61 (curv = 0.106093) INFO: Intermediate dominant points are 53 146 43 55 128 54 64 141 60 72 151 61 76 176 55 INFO: Final dominant points are 53 146 43 55 128 54 66 142 59 72 151 61 76 176 55 INFO: Selected control points are 53 146 43 55 127 52 65 143 61 72 151 60 76 176 55 INFO: Distances between consecutive points are 21 21 11 26 INFO: Selected control points in test subject's space are 41 76 33 42 67 34 47 73 40 50 76 41 51 88 42 INFO: Distances between consecutive points in test subject's space are 9 10 4 12 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.unc_AS_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.unc_AS_avg33_mni_bbr_cpts_5.nii.gz Done in 16.416 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fmajor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fmajor_PP.bbr.trk INFO: Rejected 5281 streamlines for straying off mask INFO: Rejected 197 streamlines for reversing direction INFO: Rejected 54 streamlines as length outliers INFO: Have 4243 total streamlines (min/mean/max length: 81/133/161) Processing pathway 7 of 18... Matching streamline ends INFO: Have 3238 non-truncated streamlines (min/mean/max length: 81/135/162) INFO: Center of mass of start points: (103+/-7, 38+/-10, 96+/-17) INFO: Center of mass of midpoints: (90+/-3, 91+/-3, 85+/-3) INFO: Center of mass of end points: (74+/-6, 39+/-10, 97+/-18) INFO: Split streamlines into 35 segments Computing path histograms INFO: Total streamline volume is 50800 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 137 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0592456 INFO: Points where local peeks in curvature occur are 106 49 85 (curv = 0.134984) 114 58 85 (curv = 0.105713) 91 92 84 (curv = 0.0922031) 84 92 84 (curv = 0.0624195) 62 64 89 (curv = 0.084492) 71 47 83 (curv = 0.152109) INFO: Intermediate dominant points are 96 43 106 106 49 85 108 75 84 91 92 84 62 64 89 71 47 83 70 38 99 INFO: Final dominant points are 96 43 106 106 49 85 103 83 84 91 92 84 62 64 89 71 47 83 70 38 99 WARN: Defaulting to equidistant control points INFO: Selected control points are 96 43 106 107 50 85 109 73 85 91 92 84 68 79 88 64 56 84 70 38 99 INFO: Distances between consecutive points are 25 23 26 27 24 24 INFO: Selected control points in test subject's space are 64 23 43 68 30 36 69 40 39 60 48 42 50 41 41 48 32 37 52 22 40 INFO: Distances between consecutive points in test subject's space are 11 10 12 12 10 11 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 136 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0592738 INFO: Points where local peeks in curvature occur are 112 53 84 (curv = 0.119313) 115 59 86 (curv = 0.0935375) 91 92 84 (curv = 0.0983365) 63 68 90 (curv = 0.0973913) 70 48 81 (curv = 0.156933) INFO: Intermediate dominant points are 97 43 105 112 53 84 108 76 84 91 92 84 63 68 90 70 48 81 70 37 99 INFO: Final dominant points are 97 43 105 112 53 84 103 83 84 91 92 84 63 68 90 70 48 81 70 37 99 WARN: Defaulting to equidistant control points INFO: Selected control points are 97 43 105 111 52 84 108 75 85 89 92 84 67 77 89 65 54 83 70 37 99 INFO: Distances between consecutive points are 27 23 26 27 24 24 INFO: Selected control points in test subject's space are 64 24 43 70 31 35 68 41 39 59 48 42 49 40 42 49 31 36 52 22 40 INFO: Distances between consecutive points in test subject's space are 12 11 12 13 11 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 7 voxels INFO: Length of center streamline is 134 voxels Selecting 7 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0585446 INFO: Points where local peeks in curvature occur are 112 53 85 (curv = 0.116341) 115 59 86 (curv = 0.108671) 90 92 84 (curv = 0.0849077) 63 68 90 (curv = 0.103251) 70 48 81 (curv = 0.151443) INFO: Intermediate dominant points are 98 43 105 112 53 85 107 77 84 90 92 84 63 68 90 70 48 81 70 37 99 INFO: Final dominant points are 98 43 105 112 53 85 102 84 84 90 92 84 63 68 90 70 48 81 70 37 99 INFO: Selected control points are 98 43 105 113 54 85 104 83 85 88 93 83 62 69 90 71 49 82 70 37 99 INFO: Distances between consecutive points are 27 30 19 36 23 21 INFO: Selected control points in test subject's space are 65 24 43 71 32 36 66 44 41 59 48 41 47 36 41 51 29 35 52 22 40 INFO: Distances between consecutive points in test subject's space are 12 14 8 17 10 9 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/fmajor_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/fmajor_PP_avg33_mni_bbr_cpts_7.nii.gz Done in 14.391 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/fminor_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/fminor_PP.bbr.trk INFO: Rejected 2614 streamlines for straying off mask INFO: Rejected 273 streamlines for reversing direction INFO: Rejected 62 streamlines as length outliers INFO: Have 24678 total streamlines (min/mean/max length: 49/89/114) Processing pathway 8 of 18... Matching streamline ends INFO: Have 19080 non-truncated streamlines (min/mean/max length: 52/90/117) INFO: Center of mass of start points: (103+/-5, 187+/-6, 76+/-12) INFO: Center of mass of midpoints: (90+/-2, 150+/-4, 76+/-3) INFO: Center of mass of end points: (78+/-5, 187+/-6, 77+/-11) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 59245 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 99 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0586332 INFO: Points where local peeks in curvature occur are 108 177 73 (curv = 0.0632936) 109 171 74 (curv = 0.0680653) 101 155 74 (curv = 0.0680419) 90 151 76 (curv = 0.085056) 79 154 74 (curv = 0.0599317) 71 168 70 (curv = 0.117174) INFO: Intermediate dominant points are 106 193 74 109 171 74 90 151 76 71 168 70 79 192 82 INFO: Final dominant points are 106 193 74 109 171 74 90 151 76 71 168 70 79 192 82 WARN: Defaulting to equidistant control points INFO: Selected control points are 106 193 74 109 169 74 90 151 76 71 166 71 79 192 82 INFO: Distances between consecutive points are 24 26 25 29 INFO: Selected control points in test subject's space are 65 93 52 67 83 49 59 74 47 49 81 47 53 91 56 INFO: Distances between consecutive points in test subject's space are 11 12 12 14 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0570399 INFO: Points where local peeks in curvature occur are 109 173 70 (curv = 0.0628203) 100 155 73 (curv = 0.0598337) 89 152 75 (curv = 0.0737604) 74 159 72 (curv = 0.0837559) 72 169 72 (curv = 0.057468) 73 175 73 (curv = 0.0647569) INFO: Intermediate dominant points are 106 189 78 109 173 70 100 155 73 74 159 72 81 190 86 INFO: Final dominant points are 106 189 78 109 173 70 100 155 73 74 159 72 81 190 86 INFO: Selected control points are 106 189 78 109 173 68 101 154 75 73 159 71 81 190 86 INFO: Distances between consecutive points are 19 22 29 35 INFO: Selected control points in test subject's space are 65 90 53 67 85 47 64 76 47 50 78 46 54 89 57 INFO: Distances between consecutive points in test subject's space are 8 9 14 16 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/fminor_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/fminor_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 306.12 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.atr_PP.bbr.trk INFO: Rejected 485 streamlines for straying off mask INFO: Rejected 6 streamlines for reversing direction INFO: Rejected 51 streamlines as length outliers INFO: Have 13037 total streamlines (min/mean/max length: 30/60/89) Processing pathway 9 of 18... Matching streamline ends INFO: Have 5150 non-truncated streamlines (min/mean/max length: 37/68/91) INFO: Center of mass of start points: (115+/-11, 180+/-10, 76+/-13) INFO: Center of mass of midpoints: (106+/-3, 134+/-2, 80+/-6) INFO: Center of mass of end points: (97+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 17 segments Computing path histograms INFO: Total streamline volume is 40494 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 66 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0467375 INFO: Points where local peeks in curvature occur are 113 170 77 (curv = 0.0952989) 112 157 76 (curv = 0.0683185) 112 148 80 (curv = 0.069593) 110 139 80 (curv = 0.0472619) 102 127 77 (curv = 0.0482095) INFO: Intermediate dominant points are 107 182 79 113 170 77 112 148 80 102 127 77 98 114 73 INFO: Final dominant points are 107 182 79 113 170 77 112 148 80 102 127 77 98 114 73 INFO: Selected control points are 107 182 79 112 169 75 112 148 79 103 128 77 98 114 73 INFO: Distances between consecutive points are 14 21 22 15 INFO: Selected control points in test subject's space are 66 87 53 68 82 49 69 73 48 65 64 44 63 59 40 INFO: Distances between consecutive points in test subject's space are 7 9 11 7 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 64.817 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from 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Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.atr_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.atr_PP.bbr.trk INFO: Rejected 393 streamlines for straying off mask INFO: Rejected 19 streamlines for reversing direction INFO: Rejected 30 streamlines as length outliers INFO: Have 11570 total streamlines (min/mean/max length: 31/63/92) Processing pathway 10 of 18... Matching streamline ends INFO: Have 5145 non-truncated streamlines (min/mean/max length: 41/71/92) INFO: Center of mass of start points: (67+/-9, 185+/-9, 81+/-12) INFO: Center of mass of midpoints: (73+/-3, 135+/-3, 81+/-5) INFO: Center of mass of end points: (82+/-2, 114+/-3, 78+/-6) INFO: Split streamlines into 18 segments Computing path histograms INFO: Total streamline volume is 36665 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 70 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0404834 INFO: Points where local peeks in curvature occur are 66 165 77 (curv = 0.0916354) 68 159 77 (curv = 0.0487696) 68 145 81 (curv = 0.0764078) INFO: Intermediate dominant points are 71 192 82 66 165 77 68 145 81 73 136 81 83 117 75 INFO: Final dominant points are 71 192 82 66 165 77 68 145 81 79 127 79 83 117 75 INFO: Selected control points are 71 192 82 67 165 77 68 146 81 79 128 79 83 117 75 INFO: Distances between consecutive points are 28 19 21 12 INFO: Selected control points in test subject's space are 49 90 56 48 80 50 49 71 49 54 64 45 56 60 42 INFO: Distances between consecutive points in test subject's space are 12 9 9 5 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.atr_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.atr_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 45.193 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.ccg_PP.bbr.trk INFO: Rejected 192 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 1 streamlines as length outliers INFO: Have 5085 total streamlines (min/mean/max length: 25/67/133) Processing pathway 11 of 18... Matching streamline ends INFO: Have 1407 non-truncated streamlines (min/mean/max length: 55/85/133) INFO: Center of mass of start points: (99+/-4, 80+/-7, 103+/-7) INFO: Center of mass of midpoints: (96+/-2, 125+/-2, 105+/-2) INFO: Center of mass of end points: (97+/-4, 162+/-7, 86+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18522 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0242846 INFO: Points where local peeks in curvature occur are 99 92 103 (curv = 0.0317396) 96 102 105 (curv = 0.0474075) 96 110 106 (curv = 0.0279286) 97 113 106 (curv = 0.0272309) 97 120 106 (curv = 0.0265721) 97 129 104 (curv = 0.0269178) 97 143 98 (curv = 0.0305111) 96 146 97 (curv = 0.0288442) 96 155 91 (curv = 0.0338547) INFO: Intermediate dominant points are 101 74 96 96 102 105 97 122 106 97 143 98 97 163 79 INFO: Final dominant points are 101 74 96 96 102 105 97 131 104 97 143 98 97 163 79 INFO: Selected control points are 101 74 96 97 102 106 97 130 104 96 143 100 97 163 79 INFO: Distances between consecutive points are 30 28 14 29 INFO: Selected control points in test subject's space are 65 38 44 63 49 52 63 61 55 62 67 55 62 79 50 INFO: Distances between consecutive points in test subject's space are 14 12 6 13 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 10.663 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.ccg_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.ccg_PP.bbr.trk INFO: Rejected 109 streamlines for straying off mask INFO: Rejected 0 streamlines for reversing direction INFO: Rejected 33 streamlines as length outliers INFO: Have 4279 total streamlines (min/mean/max length: 31/65/128) Processing pathway 12 of 18... Matching streamline ends INFO: Have 916 non-truncated streamlines (min/mean/max length: 56/83/126) INFO: Center of mass of start points: (81+/-4, 81+/-7, 99+/-9) INFO: Center of mass of midpoints: (83+/-1, 125+/-2, 106+/-2) INFO: Center of mass of end points: (83+/-4, 159+/-6, 88+/-8) INFO: Split streamlines into 22 segments Computing path histograms INFO: Total streamline volume is 18050 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 4 voxels INFO: Length of center streamline is 77 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0218596 INFO: Points where local peeks in curvature occur are 83 100 105 (curv = 0.0426406) 83 121 107 (curv = 0.044403) 81 136 102 (curv = 0.0258204) INFO: Intermediate dominant points are 79 78 101 83 100 105 83 121 107 81 138 101 79 156 91 INFO: Final dominant points are 79 78 101 83 100 105 83 121 107 81 147 97 79 156 91 INFO: Selected control points are 79 78 101 82 101 105 83 121 107 81 146 98 79 156 91 INFO: Distances between consecutive points are 24 20 27 12 INFO: Selected control points in test subject's space are 55 39 46 56 48 51 57 56 55 55 69 55 54 74 54 INFO: Distances between consecutive points in test subject's space are 10 9 13 5 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 7.309 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from 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streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.cab_PP.bbr.trk INFO: Rejected 1327 streamlines for straying off mask INFO: Rejected 49 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2885 total streamlines (min/mean/max length: 2/42/95) Processing pathway 13 of 18... Matching streamline ends INFO: Have 809 non-truncated streamlines (min/mean/max length: 17/51/84) INFO: Center of mass of start points: (111+/-6, 83+/-13, 74+/-13) INFO: Center of mass of midpoints: (111+/-2, 98+/-5, 58+/-5) INFO: Center of mass of end points: (115+/-4, 120+/-15, 44+/-12) INFO: Split streamlines into 11 segments Computing path histograms INFO: Total streamline volume is 13906 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 59 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0226663 INFO: Points where local peeks in curvature occur are 112 99 57 (curv = 0.0268407) 114 108 48 (curv = 0.0390136) 116 116 43 (curv = 0.0523997) INFO: Intermediate dominant points are 108 79 74 111 98 57 116 116 43 118 135 38 INFO: Final dominant points are 108 79 74 113 107 49 116 116 43 118 135 38 INFO: Selected control points are 108 79 74 111 105 49 114 112 43 118 135 38 INFO: Distances between consecutive points are 36 10 24 INFO: Selected control points in test subject's space are 68 44 35 68 59 29 69 63 28 71 74 29 INFO: Distances between consecutive points in test subject's space are 16 4 11 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 3.697 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from 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/usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.cab_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.cab_PP.bbr.trk INFO: Rejected 1284 streamlines for straying off mask INFO: Rejected 64 streamlines for reversing direction INFO: Rejected 0 streamlines as length outliers INFO: Have 2888 total streamlines (min/mean/max length: 8/42/94) Processing pathway 14 of 18... Matching streamline ends INFO: Have 871 non-truncated streamlines (min/mean/max length: 26/54/96) INFO: Center of mass of start points: (70+/-5, 80+/-6, 77+/-7) INFO: Center of mass of midpoints: (66+/-2, 101+/-2, 55+/-2) INFO: Center of mass of end points: (63+/-4, 126+/-7, 38+/-4) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 13303 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 63 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0372656 INFO: Points where local peeks in curvature occur are 68 96 60 (curv = 0.0400579) 64 106 46 (curv = 0.040879) 63 109 44 (curv = 0.0403541) 60 118 41 (curv = 0.0872739) INFO: Intermediate dominant points are 73 75 74 68 96 60 60 118 41 66 132 36 INFO: Final dominant points are 73 75 74 64 107 46 60 118 41 66 132 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 75 74 68 95 61 62 111 43 66 132 36 INFO: Distances between consecutive points are 24 25 22 INFO: Selected control points in test subject's space are 52 42 35 49 52 33 45 62 28 47 72 28 INFO: Distances between consecutive points in test subject's space are 11 12 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0364019 INFO: Points where local peeks in curvature occur are 66 104 48 (curv = 0.0443943) 61 115 42 (curv = 0.0692222) INFO: Intermediate dominant points are 72 75 75 68 96 60 61 115 42 66 131 37 INFO: Final dominant points are 72 75 75 66 104 48 61 115 42 66 131 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 75 75 68 95 61 63 111 43 66 131 37 INFO: Distances between consecutive points are 25 25 21 INFO: Selected control points in test subject's space are 51 41 36 49 52 33 46 62 28 47 71 29 INFO: Distances between consecutive points in test subject's space are 12 12 9 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 58 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0369836 INFO: Points where local peeks in curvature occur are 68 96 60 (curv = 0.0405995) 63 110 44 (curv = 0.0457321) 60 119 42 (curv = 0.0795268) INFO: Intermediate dominant points are 66 78 72 68 96 60 60 119 42 65 132 36 INFO: Final dominant points are 66 78 72 68 96 60 60 119 42 65 132 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 78 72 68 96 59 61 114 43 65 132 36 INFO: Distances between consecutive points are 22 25 20 INFO: Selected control points in test subject's space are 48 43 35 49 53 32 45 63 29 46 72 28 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0275904 INFO: Points where local peeks in curvature occur are 66 96 61 (curv = 0.0328239) 63 107 45 (curv = 0.0437477) 64 117 38 (curv = 0.0408377) INFO: Intermediate dominant points are 73 83 78 66 96 61 63 107 45 63 127 34 INFO: Final dominant points are 73 83 78 66 96 61 63 107 45 63 127 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 73 83 78 66 96 61 63 108 44 63 127 34 INFO: Distances between consecutive points are 23 21 21 INFO: Selected control points in test subject's space are 52 44 38 48 52 33 46 60 28 45 70 27 INFO: Distances between consecutive points in test subject's space are 10 10 10 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.030823 INFO: Points where local peeks in curvature occur are 65 99 58 (curv = 0.0335272) 64 103 50 (curv = 0.0494432) 64 106 46 (curv = 0.0464379) 64 118 39 (curv = 0.0479991) INFO: Intermediate dominant points are 69 84 73 64 103 50 64 118 39 63 130 37 INFO: Final dominant points are 69 84 73 64 103 50 64 118 39 63 130 37 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 84 73 65 99 58 64 111 43 63 130 37 INFO: Distances between consecutive points are 22 19 20 INFO: Selected control points in test subject's space are 50 46 36 47 54 32 46 62 28 45 71 29 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 61 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 10 INFO: Minimum allowable curvature at a dominant point is 0.0416825 INFO: Points where local peeks in curvature occur are 67 99 54 (curv = 0.0446932) 61 113 44 (curv = 0.0623091) 61 125 43 (curv = 0.0815054) INFO: Intermediate dominant points are 66 78 71 67 97 58 61 113 44 65 133 36 INFO: Final dominant points are 66 78 71 66 102 51 61 113 44 65 133 36 WARN: Defaulting to equidistant control points INFO: Selected control points are 66 78 71 67 97 58 61 115 43 65 133 36 INFO: Distances between consecutive points are 23 24 20 INFO: Selected control points in test subject's space are 48 43 35 48 53 32 45 63 29 46 72 29 INFO: Distances between consecutive points in test subject's space are 10 11 9 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0251207 INFO: Points where local peeks in curvature occur are 65 100 57 (curv = 0.0407604) 64 106 46 (curv = 0.0458245) 65 116 39 (curv = 0.0324849) INFO: Intermediate dominant points are 69 84 73 65 99 58 64 106 46 64 129 34 INFO: Final dominant points are 69 84 73 65 100 56 64 106 46 64 129 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 84 73 65 98 59 64 110 43 64 129 34 INFO: Distances between consecutive points are 20 20 21 INFO: Selected control points in test subject's space are 50 46 36 47 54 33 46 61 28 46 71 27 INFO: Distances between consecutive points in test subject's space are 9 9 10 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 50 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0279232 INFO: Points where local peeks in curvature occur are 64 105 46 (curv = 0.0619871) 64 116 38 (curv = 0.0362947) INFO: Intermediate dominant points are 69 84 73 65 99 57 64 105 46 63 127 34 INFO: Final dominant points are 69 84 73 65 100 55 64 105 46 63 127 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 84 73 65 98 58 63 109 44 63 127 34 INFO: Distances between consecutive points are 21 18 21 INFO: Selected control points in test subject's space are 50 46 36 47 54 32 46 61 28 45 70 27 INFO: Distances between consecutive points in test subject's space are 9 8 9 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 51 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.02952 INFO: Points where local peeks in curvature occur are 67 93 66 (curv = 0.0318232) 65 115 41 (curv = 0.0822393) INFO: Intermediate dominant points are 70 83 80 67 93 66 66 108 46 65 125 40 INFO: Final dominant points are 70 83 80 67 93 66 65 115 41 65 125 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 83 80 66 95 64 66 107 48 65 125 40 INFO: Distances between consecutive points are 20 20 20 INFO: Selected control points in test subject's space are 50 44 39 48 52 34 47 59 30 46 68 29 INFO: Distances between consecutive points in test subject's space are 10 8 9 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 48 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0338671 INFO: Points where local peeks in curvature occur are 67 93 66 (curv = 0.0421998) 66 109 45 (curv = 0.0483361) 64 116 40 (curv = 0.0985307) INFO: Intermediate dominant points are 71 83 79 67 93 66 66 109 45 65 125 40 INFO: Final dominant points are 71 83 79 67 93 66 64 116 40 65 125 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 71 83 79 66 96 63 66 107 47 65 125 40 INFO: Distances between consecutive points are 21 19 19 INFO: Selected control points in test subject's space are 51 44 38 48 52 34 47 59 29 46 68 29 INFO: Distances between consecutive points in test subject's space are 9 9 9 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 49 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0241037 INFO: Points where local peeks in curvature occur are 67 94 63 (curv = 0.0273765) 65 99 56 (curv = 0.028848) 63 106 45 (curv = 0.0569566) INFO: Intermediate dominant points are 72 81 76 65 99 56 63 106 45 62 121 34 INFO: Final dominant points are 72 81 76 65 99 56 63 106 45 62 121 34 WARN: Defaulting to equidistant control points INFO: Selected control points are 72 81 76 66 95 61 63 105 46 62 121 34 INFO: Distances between consecutive points are 21 18 20 INFO: Selected control points in test subject's space are 51 44 37 48 52 33 46 59 28 45 67 26 INFO: Distances between consecutive points in test subject's space are 9 9 8 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 53 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0351119 INFO: Points where local peeks in curvature occur are 66 94 65 (curv = 0.0388399) 67 106 48 (curv = 0.0370745) 65 115 40 (curv = 0.103005) INFO: Intermediate dominant points are 70 83 80 66 94 65 65 115 40 65 126 40 INFO: Final dominant points are 70 83 80 66 94 65 65 115 40 65 126 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 83 80 67 96 62 66 109 45 65 126 40 INFO: Distances between consecutive points are 22 21 18 INFO: Selected control points in test subject's space are 50 44 39 48 52 34 47 60 29 46 68 29 INFO: Distances between consecutive points in test subject's space are 10 9 8 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 54 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0321522 INFO: Points where local peeks in curvature occur are 67 101 57 (curv = 0.0366268) 67 106 49 (curv = 0.0373887) 65 115 41 (curv = 0.0754931) INFO: Intermediate dominant points are 70 83 80 67 97 61 65 115 41 65 126 40 INFO: Final dominant points are 70 83 80 67 107 47 65 115 41 65 126 40 WARN: Defaulting to equidistant control points INFO: Selected control points are 70 83 80 67 96 62 66 108 46 65 126 40 INFO: Distances between consecutive points are 22 20 19 INFO: Selected control points in test subject's space are 50 44 39 48 52 34 47 60 29 46 68 29 INFO: Distances between consecutive points in test subject's space are 10 9 8 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 47 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0190233 INFO: Points where local peeks in curvature occur are 67 92 67 (curv = 0.0223391) 67 103 51 (curv = 0.0302729) INFO: Intermediate dominant points are 69 81 81 67 92 67 67 103 51 64 120 39 INFO: Final dominant points are 69 81 81 67 92 67 67 103 51 64 120 39 WARN: Defaulting to equidistant control points INFO: Selected control points are 69 81 81 67 94 65 66 105 49 64 120 39 INFO: Distances between consecutive points are 21 19 18 INFO: Selected control points in test subject's space are 50 43 39 49 51 34 47 58 30 46 66 28 INFO: Distances between consecutive points in test subject's space are 9 8 8 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 46 voxels Selecting 4 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.027349 INFO: Points where local peeks in curvature occur are 67 105 49 (curv = 0.0296015) 65 115 42 (curv = 0.0629775) INFO: Intermediate dominant points are 67 82 75 70 96 60 65 115 42 66 124 41 INFO: Final dominant points are 67 82 75 66 107 48 65 115 42 66 124 41 INFO: Selected control points are 67 82 75 68 106 47 62 111 42 66 124 41 INFO: Distances between consecutive points are 37 9 14 INFO: Selected control points in test subject's space are 49 44 37 48 59 29 45 62 28 47 67 29 INFO: Distances between consecutive points in test subject's space are 17 4 5 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.cab_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_4.nii.gz Done in 4.034 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slfp_PP.bbr.trk INFO: Rejected 2182 streamlines for straying off mask INFO: Rejected 497 streamlines for reversing direction INFO: Rejected 24 streamlines as length outliers INFO: Have 7564 total streamlines (min/mean/max length: 20/57/99) Processing pathway 15 of 18... Matching streamline ends INFO: Have 3076 non-truncated streamlines (min/mean/max length: 26/64/102) INFO: Center of mass of start points: (145+/-6, 127+/-6, 97+/-11) INFO: Center of mass of midpoints: (128+/-4, 106+/-4, 102+/-4) INFO: Center of mass of end points: (140+/-9, 84+/-10, 110+/-11) INFO: Split streamlines into 13 segments Computing path histograms INFO: Total streamline volume is 42167 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 67 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0747013 INFO: Points where local peeks in curvature occur are 128 116 101 (curv = 0.171716) 130 105 103 (curv = 0.0896327) 129 82 102 (curv = 0.152929) INFO: Intermediate dominant points are 143 125 99 128 116 101 130 105 103 129 82 102 143 78 118 INFO: Final dominant points are 143 125 99 128 116 101 130 105 103 129 82 102 143 78 118 WARN: Defaulting to equidistant control points INFO: Selected control points are 143 125 99 128 116 101 128 99 104 129 82 102 143 78 118 INFO: Distances between consecutive points are 18 17 17 22 INFO: Selected control points in test subject's space are 84 60 52 77 56 52 78 48 50 78 41 47 85 37 53 INFO: Distances between consecutive points in test subject's space are 8 8 8 10 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597849 INFO: Points where local peeks in curvature occur are 127 110 102 (curv = 0.101758) 128 103 104 (curv = 0.0648263) 126 90 103 (curv = 0.121859) 130 85 105 (curv = 0.139152) INFO: Intermediate dominant points are 151 130 101 134 120 101 127 110 102 130 85 105 147 87 120 INFO: Final dominant points are 151 130 101 133 119 101 127 110 102 130 85 105 147 87 120 WARN: Defaulting to equidistant control points INFO: Selected control points are 151 130 101 134 120 101 128 103 104 130 85 105 147 87 120 INFO: Distances between consecutive points are 20 18 18 23 INFO: Selected control points in test subject's space are 88 62 53 80 58 52 78 50 51 79 42 49 87 41 55 INFO: Distances between consecutive points in test subject's space are 9 8 8 10 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 62 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 8 INFO: Minimum allowable curvature at a dominant point is 0.0730112 INFO: Points where local peeks in curvature occur are 140 121 97 (curv = 0.0873834) 128 114 101 (curv = 0.155774) 125 91 103 (curv = 0.163348) INFO: Intermediate dominant points are 149 128 99 128 114 101 128 104 103 125 91 103 143 87 114 INFO: Final dominant points are 149 128 99 128 114 101 127 99 104 125 91 103 143 87 114 INFO: Selected control points are 149 128 99 129 113 100 128 101 105 125 89 102 143 87 114 INFO: Distances between consecutive points are 25 13 13 22 INFO: Selected control points in test subject's space are 87 62 52 78 55 51 78 49 51 76 44 48 85 42 52 INFO: Distances between consecutive points in test subject's space are 11 6 6 10 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 21.648 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slfp_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slfp_PP.bbr.trk INFO: Rejected 2956 streamlines for straying off mask INFO: Rejected 201 streamlines for reversing direction INFO: Rejected 66 streamlines as length outliers INFO: Have 12399 total streamlines (min/mean/max length: 18/63/98) Processing pathway 16 of 18... Matching streamline ends INFO: Have 5737 non-truncated streamlines (min/mean/max length: 27/69/100) INFO: Center of mass of start points: (35+/-8, 130+/-6, 98+/-12) INFO: Center of mass of midpoints: (52+/-4, 109+/-3, 103+/-3) INFO: Center of mass of end points: (40+/-9, 80+/-10, 113+/-11) INFO: Split streamlines into 15 segments Computing path histograms INFO: Total streamline volume is 56784 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 3 voxels INFO: Length of center streamline is 73 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 9 INFO: Minimum allowable curvature at a dominant point is 0.0597307 INFO: Points where local peeks in curvature occur are 50 119 100 (curv = 0.116181) 51 90 103 (curv = 0.0712553) 53 81 102 (curv = 0.194926) INFO: Intermediate dominant points are 33 127 97 50 119 100 52 99 105 53 81 102 39 73 122 INFO: Final dominant points are 33 127 97 50 119 100 51 90 103 53 81 102 39 73 122 INFO: Selected control points are 33 127 97 50 118 101 51 91 105 53 80 102 39 73 122 INFO: Distances between consecutive points are 20 27 12 25 INFO: Selected control points in test subject's space are 33 60 53 41 56 53 42 43 50 43 39 47 37 33 55 INFO: Distances between consecutive points in test subject's space are 9 13 5 12 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 64.15 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/lh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/lh.slft_PP.bbr.trk INFO: Rejected 1359 streamlines for straying off mask INFO: Rejected 52 streamlines for reversing direction INFO: Rejected 21 streamlines as length outliers INFO: Have 6462 total streamlines (min/mean/max length: 34/89/136) Processing pathway 17 of 18... Matching streamline ends INFO: Have 4272 non-truncated streamlines (min/mean/max length: 40/92/136) INFO: Center of mass of start points: (144+/-7, 132+/-6, 93+/-10) INFO: Center of mass of midpoints: (125+/-2, 96+/-4, 101+/-3) INFO: Center of mass of end points: (147+/-6, 84+/-13, 65+/-9) INFO: Split streamlines into 23 segments Computing path histograms INFO: Total streamline volume is 41142 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 102 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 13 INFO: Minimum allowable curvature at a dominant point is 0.0494031 INFO: Points where local peeks in curvature occur are 130 118 98 (curv = 0.112622) 125 87 100 (curv = 0.0939046) 128 81 94 (curv = 0.0846298) 135 81 74 (curv = 0.072545) INFO: Intermediate dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Final dominant points are 148 133 85 130 118 98 125 87 100 135 81 74 150 93 57 INFO: Selected control points are 148 133 85 131 117 99 127 87 100 133 82 74 150 93 57 INFO: Distances between consecutive points are 27 30 27 26 INFO: Selected control points in test subject's space are 86 66 47 79 57 51 77 44 47 79 46 36 87 53 30 INFO: Distances between consecutive points in test subject's space are 12 14 11 12 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/lh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 22.699 sec. Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc001/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc002/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc003/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc004/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc005/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc006/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc007/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc008/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc009/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc010/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc011/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc012/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc013/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc014/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc015/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc016/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc017/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc018/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc019/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc020/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc021/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc022/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc023/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc024/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc025/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc026/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc027/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc028/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc029/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc030/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc031/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc032/dlabel/mni/rh.slft_PP.bbr.trk Loading streamline start ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi1.bbr.nii.gz Loading streamline end ROI from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP_roi2.bbr.nii.gz Loading streamlines from /usr/local/freesurfer/trctrain/trc033/dlabel/mni/rh.slft_PP.bbr.trk INFO: Rejected 497 streamlines for straying off mask INFO: Rejected 14 streamlines for reversing direction INFO: Rejected 17 streamlines as length outliers INFO: Have 2612 total streamlines (min/mean/max length: 30/88/130) Processing pathway 18 of 18... Matching streamline ends INFO: Have 1448 non-truncated streamlines (min/mean/max length: 55/91/132) INFO: Center of mass of start points: (41+/-9, 134+/-8, 96+/-15) INFO: Center of mass of midpoints: (56+/-2, 96+/-3, 103+/-3) INFO: Center of mass of end points: (31+/-6, 81+/-9, 71+/-8) INFO: Split streamlines into 24 segments Computing path histograms INFO: Total streamline volume is 28538 voxels Computing prior on underlying anatomy (non-truncated streamlines only) Computing prior on curvature (non-truncated streamlines only) Computing prior on underlying anatomy (all streamlines) Computing prior on curvature (all streamlines) Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0544081 INFO: Points where local peeks in curvature occur are 56 126 95 (curv = 0.115336) 58 99 102 (curv = 0.108833) 52 87 98 (curv = 0.0917009) 51 82 87 (curv = 0.0588861) INFO: Intermediate dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 INFO: Final dominant points are 42 138 83 56 126 95 58 99 102 52 87 98 29 83 70 WARN: Defaulting to equidistant control points INFO: Selected control points are 42 138 83 54 121 98 57 97 102 50 81 86 29 83 70 INFO: Distances between consecutive points are 26 25 24 26 INFO: Selected control points in test subject's space are 37 67 48 43 57 52 45 47 50 41 42 41 31 45 35 INFO: Distances between consecutive points in test subject's space are 12 10 11 12 WARN: Could not find satisfactory control point fit - try 1 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0480488 INFO: Points where local peeks in curvature occur are 55 120 101 (curv = 0.0617335) 57 103 106 (curv = 0.088208) 48 82 93 (curv = 0.100716) INFO: Intermediate dominant points are 34 141 103 55 121 100 57 103 106 48 82 93 27 77 70 INFO: Final dominant points are 34 141 103 56 116 102 57 103 106 48 82 93 27 77 70 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 34 141 103 55 121 100 56 97 103 46 82 84 27 77 70 INFO: Distances between consecutive points are 29 24 26 24 INFO: Selected control points in test subject's space are 34 65 57 44 57 53 44 46 50 40 43 41 30 42 34 INFO: Distances between consecutive points in test subject's space are 13 11 10 12 WARN: Could not find satisfactory control point fit - try 2 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0455956 INFO: Points where local peeks in curvature occur are 53 125 100 (curv = 0.0826439) 56 102 104 (curv = 0.0610214) 48 85 95 (curv = 0.0912904) INFO: Intermediate dominant points are 34 140 103 53 125 100 56 102 104 48 85 95 28 79 69 INFO: Final dominant points are 34 140 103 53 125 100 56 102 104 48 85 95 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 103 54 122 101 55 98 103 46 83 86 28 79 69 INFO: Distances between consecutive points are 27 24 24 25 INFO: Selected control points in test subject's space are 34 64 57 43 57 53 44 47 50 40 43 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 12 10 11 11 WARN: Could not find satisfactory control point fit - try 3 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 90 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0462529 INFO: Points where local peeks in curvature occur are 53 124 101 (curv = 0.10171) 56 107 105 (curv = 0.0740831) 56 99 104 (curv = 0.0611131) 48 84 94 (curv = 0.0938564) INFO: Intermediate dominant points are 33 140 105 53 124 101 56 107 105 48 84 94 29 78 70 INFO: Final dominant points are 33 140 105 53 124 101 56 107 105 48 84 94 29 78 70 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 33 140 105 54 123 101 56 99 104 47 83 87 29 78 70 INFO: Distances between consecutive points are 27 24 25 25 INFO: Selected control points in test subject's space are 33 64 58 43 58 53 44 47 51 40 43 42 31 43 34 INFO: Distances between consecutive points in test subject's space are 13 11 11 12 WARN: Could not find satisfactory control point fit - try 4 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0457958 INFO: Points where local peeks in curvature occur are 52 124 100 (curv = 0.0723937) 56 109 104 (curv = 0.0844633) 48 85 95 (curv = 0.099143) INFO: Intermediate dominant points are 33 140 103 52 124 100 56 109 104 48 85 95 28 79 69 INFO: Final dominant points are 33 140 103 52 124 100 56 109 104 48 85 95 28 79 69 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 33 140 103 54 121 101 55 98 103 46 83 85 28 79 69 INFO: Distances between consecutive points are 28 23 25 24 INFO: Selected control points in test subject's space are 33 64 57 43 57 53 44 47 50 40 43 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 13 10 11 11 WARN: Could not find satisfactory control point fit - try 5 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.048021 INFO: Points where local peeks in curvature occur are 48 129 99 (curv = 0.0570238) 54 121 101 (curv = 0.055418) 56 105 104 (curv = 0.0686381) 48 85 93 (curv = 0.0861347) INFO: Intermediate dominant points are 34 140 103 48 129 99 56 105 104 48 85 93 28 79 69 INFO: Final dominant points are 34 140 103 48 129 99 56 105 104 48 85 93 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 103 54 122 100 56 100 103 46 84 86 28 79 69 INFO: Distances between consecutive points are 27 22 25 25 INFO: Selected control points in test subject's space are 34 64 57 43 57 53 44 48 51 40 43 42 31 43 34 INFO: Distances between consecutive points in test subject's space are 12 9 11 12 WARN: Could not find satisfactory control point fit - try 6 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.046186 INFO: Points where local peeks in curvature occur are 55 121 101 (curv = 0.0615228) 56 107 104 (curv = 0.0578098) 56 99 103 (curv = 0.0574745) 48 85 94 (curv = 0.0949264) INFO: Intermediate dominant points are 34 141 103 55 121 101 56 107 104 48 85 94 28 79 69 INFO: Final dominant points are 34 141 103 55 121 101 56 107 104 48 85 94 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 141 103 55 121 101 55 97 102 46 83 85 28 79 69 INFO: Distances between consecutive points are 29 24 24 24 INFO: Selected control points in test subject's space are 34 65 57 44 57 53 44 46 50 40 43 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 13 11 10 11 WARN: Could not find satisfactory control point fit - try 7 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 95 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0496574 INFO: Points where local peeks in curvature occur are 55 119 101 (curv = 0.0730799) 55 105 104 (curv = 0.0666535) 55 100 103 (curv = 0.0598027) 48 86 95 (curv = 0.0983926) 42 84 75 (curv = 0.079932) INFO: Intermediate dominant points are 33 141 103 55 119 101 54 97 102 48 86 95 27 79 69 INFO: Final dominant points are 33 141 103 55 119 101 54 97 102 48 86 95 27 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 122 100 54 98 102 46 84 85 27 79 69 INFO: Distances between consecutive points are 28 24 23 25 INFO: Selected control points in test subject's space are 33 65 57 43 57 53 43 47 50 40 43 41 30 43 34 INFO: Distances between consecutive points in test subject's space are 13 10 10 12 WARN: Could not find satisfactory control point fit - try 8 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0462433 INFO: Points where local peeks in curvature occur are 52 124 101 (curv = 0.0544212) 56 116 102 (curv = 0.0529512) 56 108 104 (curv = 0.0510991) 55 100 103 (curv = 0.0580403) 48 84 93 (curv = 0.113251) 43 83 77 (curv = 0.051309) INFO: Intermediate dominant points are 33 140 103 52 124 101 55 100 103 48 84 93 28 79 69 INFO: Final dominant points are 33 140 103 52 124 101 55 100 103 48 84 93 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 140 103 55 119 101 54 96 102 46 83 83 28 79 69 INFO: Distances between consecutive points are 30 23 24 23 INFO: Selected control points in test subject's space are 33 64 57 44 56 53 43 46 50 39 43 40 31 43 34 INFO: Distances between consecutive points in test subject's space are 14 10 11 10 WARN: Could not find satisfactory control point fit - try 9 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0456406 INFO: Points where local peeks in curvature occur are 53 124 101 (curv = 0.0749588) 56 106 104 (curv = 0.0689621) 48 85 95 (curv = 0.0952838) INFO: Intermediate dominant points are 34 140 103 53 124 101 56 106 104 48 85 95 29 79 69 INFO: Final dominant points are 34 140 103 53 124 101 56 106 104 48 85 95 29 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 103 54 120 101 55 98 103 46 83 85 29 79 69 INFO: Distances between consecutive points are 28 22 25 24 INFO: Selected control points in test subject's space are 34 64 57 43 56 53 44 47 50 40 43 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 13 10 11 11 WARN: Could not find satisfactory control point fit - try 10 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.047638 INFO: Points where local peeks in curvature occur are 53 123 100 (curv = 0.0591739) 56 105 104 (curv = 0.0788528) 47 84 92 (curv = 0.105179) INFO: Intermediate dominant points are 33 141 103 53 123 100 56 105 104 47 84 92 28 79 69 INFO: Final dominant points are 33 141 103 53 123 100 56 105 104 47 84 92 28 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 121 101 55 98 102 46 84 84 28 79 69 INFO: Distances between consecutive points are 29 23 25 24 INFO: Selected control points in test subject's space are 33 65 57 43 57 53 44 47 50 39 43 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 13 10 11 11 WARN: Could not find satisfactory control point fit - try 11 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 91 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0487351 INFO: Points where local peeks in curvature occur are 53 124 100 (curv = 0.0669843) 56 101 104 (curv = 0.0719843) 48 85 93 (curv = 0.0861347) INFO: Intermediate dominant points are 34 141 103 53 124 100 56 101 104 48 85 93 27 78 69 INFO: Final dominant points are 34 141 103 53 124 100 56 101 104 48 85 93 27 78 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 141 103 55 122 100 56 99 103 46 84 85 27 78 69 INFO: Distances between consecutive points are 28 23 25 26 INFO: Selected control points in test subject's space are 34 65 57 44 57 53 44 47 51 40 43 41 30 43 34 INFO: Distances between consecutive points in test subject's space are 13 10 11 12 WARN: Could not find satisfactory control point fit - try 12 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 93 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 12 INFO: Minimum allowable curvature at a dominant point is 0.0470386 INFO: Points where local peeks in curvature occur are 53 123 100 (curv = 0.0594624) 56 104 104 (curv = 0.080534) 55 97 102 (curv = 0.0486378) 48 86 95 (curv = 0.104467) INFO: Intermediate dominant points are 33 141 103 56 104 104 48 86 95 45 84 83 27 79 69 INFO: Final dominant points are 33 141 103 56 104 104 48 86 95 39 84 72 27 79 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 141 103 54 121 100 54 96 102 45 84 83 27 79 69 INFO: Distances between consecutive points are 29 25 24 23 INFO: Selected control points in test subject's space are 33 65 57 43 57 53 43 46 50 39 44 40 30 43 34 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 13 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0569891 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.0825601) 52 115 102 (curv = 0.0819523) 56 95 104 (curv = 0.0771318) 55 89 102 (curv = 0.0667286) 53 82 95 (curv = 0.0895094) INFO: Intermediate dominant points are 33 129 101 51 118 101 53 82 95 50 82 84 34 77 77 INFO: Final dominant points are 33 129 101 51 118 101 53 82 95 43 83 73 34 77 77 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 114 102 56 92 103 50 82 85 34 77 77 INFO: Distances between consecutive points are 25 22 21 19 INFO: Selected control points in test subject's space are 33 60 54 43 54 52 44 44 50 41 43 41 34 41 37 INFO: Distances between consecutive points in test subject's space are 12 10 10 8 WARN: Could not find satisfactory control point fit - try 14 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0458844 INFO: Points where local peeks in curvature occur are 54 123 101 (curv = 0.0979336) 56 107 105 (curv = 0.0822709) 55 98 103 (curv = 0.0477574) 48 84 94 (curv = 0.0955295) INFO: Intermediate dominant points are 33 140 105 54 123 101 56 100 104 48 84 94 33 81 69 INFO: Final dominant points are 33 140 105 54 123 101 54 94 101 48 84 94 33 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 140 105 54 123 101 56 100 104 46 83 88 33 81 69 INFO: Distances between consecutive points are 27 23 25 23 INFO: Selected control points in test subject's space are 33 64 58 43 58 53 44 47 51 40 42 42 33 44 34 INFO: Distances between consecutive points in test subject's space are 13 11 11 11 WARN: Could not find satisfactory control point fit - try 15 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 86 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0490509 INFO: Points where local peeks in curvature occur are 55 121 103 (curv = 0.0716713) 57 114 103 (curv = 0.0761282) 56 107 105 (curv = 0.0786728) 55 96 103 (curv = 0.0542562) 48 84 95 (curv = 0.118268) INFO: Intermediate dominant points are 36 136 104 55 121 103 56 107 105 48 84 95 29 78 70 INFO: Final dominant points are 36 136 104 55 121 103 56 107 105 48 84 95 29 78 70 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 104 56 119 103 55 97 103 46 82 86 29 78 70 INFO: Distances between consecutive points are 26 22 24 24 INFO: Selected control points in test subject's space are 35 63 57 44 56 54 44 46 50 40 42 41 31 43 34 INFO: Distances between consecutive points in test subject's space are 12 11 11 11 WARN: Could not find satisfactory control point fit - try 16 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 88 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0437827 INFO: Points where local peeks in curvature occur are 54 123 101 (curv = 0.0799356) 57 107 105 (curv = 0.057148) 48 84 95 (curv = 0.0966677) INFO: Intermediate dominant points are 34 140 104 54 123 101 57 107 105 48 84 95 33 81 69 INFO: Final dominant points are 34 140 104 54 123 101 57 107 105 48 84 95 33 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 34 140 104 54 123 101 56 101 104 47 83 92 33 81 69 INFO: Distances between consecutive points are 26 22 23 27 INFO: Selected control points in test subject's space are 34 64 57 43 58 53 44 48 51 40 42 44 33 44 34 INFO: Distances between consecutive points in test subject's space are 12 10 10 12 WARN: Could not find satisfactory control point fit - try 17 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0452747 INFO: Points where local peeks in curvature occur are 54 123 100 (curv = 0.056271) 57 105 104 (curv = 0.0853095) 55 96 101 (curv = 0.0491356) 48 86 95 (curv = 0.0940917) INFO: Intermediate dominant points are 33 142 103 54 123 100 57 105 104 48 86 95 31 81 69 INFO: Final dominant points are 33 142 103 56 116 101 57 105 104 48 86 95 31 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 142 103 54 123 100 56 100 103 47 84 87 31 81 69 INFO: Distances between consecutive points are 28 23 24 24 INFO: Selected control points in test subject's space are 33 65 57 43 58 53 44 48 51 40 43 42 32 44 35 INFO: Distances between consecutive points in test subject's space are 13 10 11 11 WARN: Could not find satisfactory control point fit - try 18 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 89 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0509719 INFO: Points where local peeks in curvature occur are 52 117 101 (curv = 0.106241) 56 90 103 (curv = 0.0762605) 53 80 91 (curv = 0.051943) 53 80 85 (curv = 0.0567582) 49 80 78 (curv = 0.0531748) INFO: Intermediate dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 INFO: Final dominant points are 33 129 101 52 117 101 56 90 103 49 80 78 33 76 75 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 54 114 102 57 91 103 52 80 84 33 76 75 INFO: Distances between consecutive points are 26 23 23 21 INFO: Selected control points in test subject's space are 33 60 54 43 54 52 45 44 49 42 42 40 33 41 36 INFO: Distances between consecutive points in test subject's space are 12 11 10 10 WARN: Could not find satisfactory control point fit - try 19 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0543301 INFO: Points where local peeks in curvature occur are 51 117 101 (curv = 0.0925797) 56 96 104 (curv = 0.0835785) 55 88 102 (curv = 0.0685132) 52 82 95 (curv = 0.0938857) INFO: Intermediate dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 INFO: Final dominant points are 34 128 101 51 117 101 56 96 104 52 82 95 34 78 75 WARN: Defaulting to equidistant dominant points WARN: Defaulting to equidistant control points INFO: Selected control points are 34 128 101 52 115 102 56 93 103 50 82 85 34 78 75 INFO: Distances between consecutive points are 22 22 22 19 INFO: Selected control points in test subject's space are 34 60 54 42 54 53 44 45 50 41 43 41 34 42 36 INFO: Distances between consecutive points in test subject's space are 10 10 10 9 WARN: Could not find satisfactory control point fit - try 20 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0522221 INFO: Points where local peeks in curvature occur are 51 118 101 (curv = 0.08957) 53 106 104 (curv = 0.0533716) 56 95 104 (curv = 0.0627361) 56 91 103 (curv = 0.0658541) 54 82 96 (curv = 0.0734739) 49 81 79 (curv = 0.054201) INFO: Intermediate dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 INFO: Final dominant points are 33 129 101 51 118 101 54 82 96 49 81 79 34 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 93 103 52 80 87 34 78 74 INFO: Distances between consecutive points are 24 22 21 22 INFO: Selected control points in test subject's space are 33 60 54 43 54 53 44 45 50 42 41 41 34 42 36 INFO: Distances between consecutive points in test subject's space are 12 10 10 9 WARN: Could not find satisfactory control point fit - try 21 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0460074 INFO: Points where local peeks in curvature occur are 53 122 102 (curv = 0.0574854) 56 117 102 (curv = 0.0711624) 56 108 105 (curv = 0.072889) 48 84 95 (curv = 0.100253) INFO: Intermediate dominant points are 36 136 104 53 122 102 56 108 105 48 84 95 32 81 69 INFO: Final dominant points are 36 136 104 53 122 102 56 108 105 48 84 95 32 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 104 55 119 102 55 98 103 46 83 88 32 81 69 INFO: Distances between consecutive points are 26 21 23 24 INFO: Selected control points in test subject's space are 35 63 57 44 56 53 44 47 50 40 42 42 33 44 35 INFO: Distances between consecutive points in test subject's space are 12 9 10 10 WARN: Could not find satisfactory control point fit - try 22 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 84 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0539997 INFO: Points where local peeks in curvature occur are 53 115 102 (curv = 0.101316) 53 106 104 (curv = 0.0632939) 56 94 104 (curv = 0.0741206) 55 87 102 (curv = 0.0816165) 54 81 93 (curv = 0.0717009) 51 80 82 (curv = 0.0637529) INFO: Intermediate dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 INFO: Final dominant points are 33 129 101 53 115 102 55 87 102 51 80 82 35 78 74 WARN: Defaulting to equidistant control points INFO: Selected control points are 33 129 101 53 115 102 56 94 104 53 80 90 35 78 74 INFO: Distances between consecutive points are 24 21 20 24 INFO: Selected control points in test subject's space are 33 60 54 43 54 53 44 45 50 43 41 43 34 42 36 INFO: Distances between consecutive points in test subject's space are 12 10 8 11 WARN: Could not find satisfactory control point fit - try 23 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 87 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0457292 INFO: Points where local peeks in curvature occur are 56 119 104 (curv = 0.0984498) 56 106 105 (curv = 0.0546334) 48 84 96 (curv = 0.11762) 43 83 79 (curv = 0.0544946) INFO: Intermediate dominant points are 36 136 105 56 119 104 54 97 103 48 84 96 32 81 69 INFO: Final dominant points are 36 136 105 56 119 104 53 94 102 48 84 96 32 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 105 55 120 104 55 98 103 46 83 90 32 81 69 INFO: Distances between consecutive points are 25 22 22 25 INFO: Selected control points in test subject's space are 35 62 57 44 56 54 44 47 50 40 42 43 33 44 35 INFO: Distances between consecutive points in test subject's space are 11 10 9 11 WARN: Could not find satisfactory control point fit - try 24 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 83 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0451866 INFO: Points where local peeks in curvature occur are 56 118 104 (curv = 0.085339) 56 108 105 (curv = 0.0595008) 47 83 94 (curv = 0.10267) INFO: Intermediate dominant points are 36 136 105 56 118 104 54 96 103 47 83 94 32 81 69 INFO: Final dominant points are 36 136 105 56 118 104 53 93 101 47 83 94 32 81 69 WARN: Defaulting to equidistant control points INFO: Selected control points are 36 136 105 56 118 104 54 97 103 46 83 88 32 81 69 INFO: Distances between consecutive points are 27 21 22 24 INFO: Selected control points in test subject's space are 35 62 57 44 55 54 43 46 50 40 42 42 33 44 35 INFO: Distances between consecutive points in test subject's space are 12 10 9 10 WARN: Could not find satisfactory control point fit - try 25 Finding center streamline INFO: Step is 5 voxels INFO: Length of center streamline is 85 voxels Selecting 5 points on center streamline INFO: Minimum allowable distance between dominant points is 11 INFO: Minimum allowable curvature at a dominant point is 0.0473293 INFO: Points where local peeks in curvature occur are 57 116 104 (curv = 0.0927781) 56 107 105 (curv = 0.0521476) 48 84 96 (curv = 0.0992254) 46 82 91 (curv = 0.0761098) INFO: Intermediate dominant points are 37 136 104 57 116 104 54 96 103 48 84 96 33 81 69 INFO: Final dominant points are 37 136 104 57 116 104 54 94 102 48 84 96 33 81 69 INFO: Selected control points are 37 136 104 57 116 104 53 95 103 50 84 94 33 81 69 INFO: Distances between consecutive points are 28 21 15 30 INFO: Selected control points in test subject's space are 35 63 57 45 54 53 43 45 50 42 42 45 33 44 34 INFO: Distances between consecutive points in test subject's space are 14 10 6 14 Writing output files to /home/michele/spd_processing/tracula/dlabel/mni/rh.slft_PP_avg33_mni_bbr_* Writing spline volume to /home/michele/spd_processing/tracula/dlabel/mni/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Writing spline volume to /home/michele/spd_processing/tracula/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5.nii.gz Done in 7.811 sec. dmri_train done #------------------------------------- trac-preproc finished without error at Fri Nov 6 10:31:05 UTC 2020 New invocation of trac-all Fri Nov 6 10:31:05 UTC 2020 /home/michele/spd_processing /usr/local/freesurfer/bin/trac-all -bedp -c tracula/dmrirc.example Subject tracula SUBJECTS_DIR /home/michele/spd_processing FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a michele ian-System-Product-Name Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63499 maxlocks unlimited maxsignal 63499 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 16369620 8968856 5524664 660908 1876100 6412344 Swap: 2097148 147200 1949948 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:31:05-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 ./tracula/dmri subjectdir is /home/michele/spd_processing/tracula/dmri /home/michele/spd_processing/tracula/dmri/data not found New invocation of trac-all Fri Nov 6 10:35:46 GMT 2020 /home/michele/spd_processing /usr/local/freesurfer/bin/trac-all -bedp -c tracula/dmrirc.example Subject tracula SUBJECTS_DIR /home/michele/spd_processing FREESURFER_HOME /usr/local/freesurfer Actual FREESURFER_HOME /usr/local/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.1-f53a55a michele ian-System-Product-Name Linux ian-System-Product-Name 5.4.0-52-generic #57~18.04.1-Ubuntu SMP Thu Oct 15 14:04:49 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 1024 memorylocked 65536 kbytes maxproc 63499 maxlocks unlimited maxsignal 63499 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 16369620 8831012 5432180 668948 2106428 6542532 Swap: 2097148 147200 1949948 ######################################## Program versions: $Id: trac-all,v 1.60.2.1 2016/12/20 17:04:05 zkaufman Exp $ mri_convert.bin --all-info ProgramName: mri_convert.bin ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 6.0 $Id: bbregister,v 1.75 2016/05/10 20:02:28 greve Exp $ $Id: mri_cvs_register,v 1.48 2016/03/06 21:31:56 lzollei Exp $ ProgramName: dmri_motion ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_train ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_paths ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_pathstats ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_mergepaths ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: dmri_group ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2020/11/06-10:35:46-GMT BuildTimeStamp: Oct 20 2017 13:59:15 CVS: User: michele Machine: ian-System-Product-Name Platform: Linux PlatformVersion: 5.4.0-52-generic CompilerName: GCC CompilerVersion: 40400 WARN: Running bedbostx locally - this might take a while WARN: It is recommended to run this step on a cluster bedpostx_mgh -n 2 ./tracula/dmri subjectdir is /home/michele/spd_processing/tracula/dmri /home/michele/spd_processing/tracula/dmri/data not found