Hi Gerit - Can you please send the entire trac-all.log for this subject? There could be some clues in the info that's printed out from the earlier steps, even if there's no outright error in those steps.
Thanks,
a.yThe information in this e-mail is intended only for the person to whom it is
On Fri, 5 Jul 2013, Gerit Pfuhl wrote:
Dear Freesurfer experts,
for one subject (out of over 80 already processed) I get i nthe last step an error I am unable to locate. The output from the tracula -path command says at the
end: option 0 unknown.
There are no reported problems in -prep, and -bedp. The script uses default values (I run this subject 3 times, always gets stuck on -path, not before).
The subject was processed fine in tracule 5.1.0 with flt. Now in 5.2.0 we use bbr
Excerpt of the output
...
/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/rh.cab_PP_avg33_mni_bbr_cpts_5_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/lh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/rh.ccg_PP_avg33_mni_bbr_cpts_4_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/lh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/rh.slfp_PP_avg33_mni_bbr_cpts_5_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/lh.slft_PP_avg33_mni_bbr_cpts_5_std.txt
/fastfs/igis/MRI_fs_rec_dti/64-10-094-1/dlabel/diff/rh.slft_PP_avg33_mni_bbr_cpts_5_std.txt
ERROR: Option 0 unknown
Thanks for all help to understand this
Gerit
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.