Hello all,

I am interested in importing some seed regions which are in MNI space in order to calculate functional connectivity maps. Looks like command preproc-sess doesn't normalize the BOLD data and only the regions generated by FreeSurfer LookUp table which have 'segid', can be used to calculate functional connectivity maps.

I was wondering how can I normalize the BOLD and T1w data so that I can use http://surfer.nmr.mgh.harvard.edu/fswiki/FsFastFunctionalConnectivityWalkthrough instructions to calculate functional connectivity from MNI seed regions.

Thanks,
Sahil

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Sahil Bajaj
Post-doctoral Fellow
Nantz National Alzheimer's Center, Department of Neurology
The Houston Methodist Research Institute (THMRI)