Oh that's perfect, thanks Bruce!

-Paul

---

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Fischl, Bruce R.,PHD <BFISCHL@mgh.harvard.edu>
Sent: Tuesday, December 6, 2022 12:06 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] FreeSurfer equivalent to fslsplit?

 

I think mri_convert can take a frame number. Something like:

 

mri_convert -nth 0 image.nii frame0.mgz

mri_convert -nth 1 image.nii frame1.mgz

.

.

.

Although that means you have to know how many frames are in the original file

 

 

From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> On Behalf Of Wighton, Paul
Sent: Tuesday, December 6, 2022 12:01 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] FreeSurfer equivalent to fslsplit?

 

Hey FreeSurfer aficionados,

 

Is there a FreeSurfer equivalent to fslsplit?  If I have a 4d nifti, is there a way to split that into a set of 3d niftis from the command line?

 

Thanks,

 

-Paul

_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer