Hi

Thank you so much for your response. I attached here three files including the command lines, LUT file , and the list of names I want to get and what the result is actually. I'd appreciate if you look at them and let me know what is wrong with that. 

Regards,

Faezeh Vedaei

On Mon, Feb 29, 2016 at 4:45 PM, Faeze Vedaei <faezevedaei@gmail.com> wrote:

Hi,

I checked again to arrange the labels in the order of LUT file, but the result has not changed. Can you help me more how I can fix this problem? Thank you so much for your time and help.

Regards,

Faezeh Vedaei

On Mon, Feb 29, 2016 at 3:01 PM, Faeze Vedaei <faezevedaei@gmail.com> wrote:

Hi,

Thank you for your response. Yes, you are right. The names come from the color LUT file. But, the issue is that I chose the label files from that LUT file too. It meas the source that I chose the label files from and the source of the region's names in tksurfer are the same. The problem is just I do not have the label's names I merged to create annot file, in the tksurfer GUI. It shows another names of that list! So, what do you think about? What is the problem?

Regards,

Faezeh Vedaei

On Mon, Feb 29, 2016 at 12:42 PM, Faeze Vedaei <faezevedaei@gmail.com> wrote:

Hi Freesurfer experts,

I have created an annotation file by several label files using mris_label2annot command in Freesurfer. The problem is that when I open this annot file in tksurfer and click on colored regions which corresponded to specific labels I had chosen them, I do not have their name on the vertex information part at the bottom of tksurfer GUI. It shows very different names for these regions. May you explains me what is the problem I could not see the exact region's name as I have them for label files?

Thanks,

Faezeh Vedaei