Jasmin,
Did you follow the instructions from the wiki:
https://surfer.nmr.mgh.harvard.edu/fswiki/QuickInstall
which links to this mac specific page.
https://surfer.nmr.mgh.harvard.edu/fswiki/MacOsInstall
?
hth
d
On Thu, Jan 14, 2016 at 5:10 PM, Jasmin Alves <jalves@usc.edu> wrote:
> Jasmins-MacBook-Pro:freesurfer jasminalves$ ls -l
> $FREESURFER_HOME/bin/tksurfer
>
> -rwxr-xr-x 1 root wheel 103 May 14 2013
> /Applications/freesurfer/bin/tksurfer
>
>
> Jasmins-MacBook-Pro:freesurfer jasminalves$ $> freeview -v
> $SUBJECTS_DIR/bert/mri/brainmask.mgz -v
> $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f
> $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f
> $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f
> $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f
> $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red
>
> -bash: freeview: Permission denied
>
>
> On Thu, Jan 14, 2016 at 2:04 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu>
> wrote:
>>
>> Jasmin, can you just cut and paste it into the email?
>>
>> On 01/14/2016 04:59 PM, Jasmin Alves wrote:
>> > Here is the output to the ls command
>> >
>> > On Thu, Jan 14, 2016 at 1:55 PM, Jasmin Alves <jalves@usc.edu
>> > <mailto:jalves@usc.edu>> wrote:
>> >
>> > Hi Dr. Greve,
>> >
>> > I am still receiving the same message that I am denied access to
>> > freeview. Is there anything I can do?
>> >
>> > Thanks,
>> > Jasmin
>> >
>> > On Thu, Jan 14, 2016 at 1:22 PM, Douglas N Greve
>> > <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>>
>> > wrote:
>> >
>> > Hi Jasmin, do you have permission to execute FS commands? What
>> > is the
>> > result of
>> > ls -l $FREESURFER_HOME/bin/tksurfer
>> >
>> >
>> >
>> > On 01/14/2016 04:16 PM, Jasmin Alves wrote:
>> > > Hello,
>> > >
>> > > I recently downloaded freesurfer on my mac with a Yosemite
>> > operating
>> > > system. The application itself appears to work, however I am
>> > not able
>> > > to use the command line to do any of the testing free surfer
>> > commands,
>> > > as I keep getting a access denied. I have attached a
>> > screenshot. Your
>> > > help would be very useful.
>> > >
>> > > Thank you,
>> > > Jasmin
>> > >
>> > > --
>> > > Jasmin Alves
>> > > Predoctoral Student
>> > > Medical Biology Graduate Program
>> > > University of Southern California
>> > > jalves@usc.edu <mailto:jalves@usc.edu>
>> > <mailto:jalves@usc.edu <mailto:jalves@usc.edu>>
>> > >
>> > >
>> > >
>> > > _______________________________________________
>> > > Freesurfer mailing list
>> > > Freesurfer@nmr.mgh.harvard.edu
>> > <mailto:Freesurfer@nmr.mgh.harvard.edu>
>> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >
>> > --
>> > Douglas N. Greve, Ph.D.
>> > MGH-NMR Center
>> > greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>
>> > Phone Number: 617-724-2358 <tel:617-724-2358>
>> > Fax: 617-726-7422 <tel:617-726-7422>
>> >
>> > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting>
>> > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> > www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html>
>> > Outgoing:
>> > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> > Freesurfer@nmr.mgh.harvard.edu
>> > <mailto:Freesurfer@nmr.mgh.harvard.edu>
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>> >
>> >
>> > The information in this e-mail is intended only for the person
>> > to whom it is
>> > addressed. If you believe this e-mail was sent to you in error
>> > and the e-mail
>> > contains patient information, please contact the Partners
>> > Compliance HelpLine at
>> > http://www.partners.org/complianceline . If the e-mail was
>> > sent to you in error
>> > but does not contain patient information, please contact the
>> > sender and properly
>> > dispose of the e-mail.
>> >
>> >
>> >
>> >
>> > --
>> > Jasmin Alves
>> > Predoctoral Student
>> > Medical Biology Graduate Program
>> > University of Southern California
>> > jalves@usc.edu <mailto:jalves@usc.edu>
>> >
>> >
>> >
>> >
>> > --
>> > Jasmin Alves
>> > Predoctoral Student
>> > Medical Biology Graduate Program
>> > University of Southern California
>> > jalves@usc.edu <mailto:jalves@usc.edu>
>> >
>> >
>> >
>> > _______________________________________________
>> > Freesurfer mailing list
>> > Freesurfer@nmr.mgh.harvard.edu
>> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>>
>> --
>> Douglas N. Greve, Ph.D.
>> MGH-NMR Center
>> greve@nmr.mgh.harvard.edu
>> Phone Number: 617-724-2358
>> Fax: 617-726-7422
>>
>> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
>> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2
>> www.nmr.mgh.harvard.edu/facility/filedrop/index.html
>> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
>>
>> _______________________________________________
>> Freesurfer mailing list
>> Freesurfer@nmr.mgh.harvard.edu
>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
>
>
> --
> Jasmin Alves
> Predoctoral Student
> Medical Biology Graduate Program
> University of Southern California
> jalves@usc.edu
>
>
> _______________________________________________
> Freesurfer mailing list
> Freesurfer@nmr.mgh.harvard.edu
> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the
> contains patient information, please contact the Partners Compliance
> HelpLine at
> http://www.partners.org/complianceline . If the e-mail was sent to you in
> error
> but does not contain patient information, please contact the sender and
> properly
> dispose of the e-mail.
>
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer