I am not sure that the issue is with the SIP, because the message says this - "freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c" does not exist in the patches directory, and in fact, it does not exist here - https://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/

any ideas where this patch needs to come from?

thanks,

Shachar

On Wed, 13 Feb 2019 at 16:09, Shachar Gal <gal.shachar@gmail.com> wrote:

Hey Tim,

I tried to run the “-E fs_update”, and got this message:

rsync -zbrlv --progress --suffix=.1550066275_bak rsync://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c/* /Applications/freesurfer
receiving file list ...
rsync: change_dir "/dist/freesurfer/patches/freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c" (in pub) failed: No such file or directory (2)
0 files to consider

sent 4 bytes received 9 bytes 8.67 bytes/sec
total size is 0 speedup is 0.00
rsync error: some files could not be transferred (code 23) at /BuildRoot/Library/Caches/com.apple.xbs/Sources/rsync/rsync-52.200.1/rsync/main.c(1404) [receiver=2.6.9]

Does the indicate I should disable SIP, or is it a different issue?

Thanks,
Shachar