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Hi Freesurfers,

I'm currently working on running infant_recon_all with our edited
aseg.nii.gz for newborn data. However, we've encountered an issue
where the generated surface does not align well with the provided aseg
file. I have attached some screenshots as an example, in which a fold
that infant_recon_all is failing to fully recognize. This problem
seems consistent across the brain and subjects.

I'm reaching out to inquire if anyone has experience with this issue
and if there are specific parameters that we can adjust to address
this issue.

Here is the command we've been using:
infant_recon_all --s sub-1041 --age 1 --inputfile
${SUBJECTS_DIR}/sub-1041/mprage.nii.gz --segfile
${SUBJECTS_DIR}/sub-1041/aseg.nii --masked
${SUBJECTS_DIR}/sub-1041/brain_mask.nii.gz

Thank you,
Yanbin Niu