On 14 Jul 2016, at 10:05, Fernando Pérez-García <fepegar@gmail.com> wrote:

I am using Ubuntu 14.04.4.

Please let me know if you need some more info.

Cheers,

Fernando

2016-07-14 10:59 GMT+02:00 Iglesias, Eugenio <e.iglesias@ucl.ac.uk>:

Dear Fernando,

Are you using the MAC version? I haven’t finished fixing the bugs in that one yet.

If you’re using the Linux version: Zeke, can you please shed some light on what the problem might be? 

Cheers,

Eugenio

Juan Eugenio Iglesias
Translational Imaging Group
University College London
http://www.jeiglesias.com
http://cmictig.cs.ucl.ac.uk/

On 14 Jul 2016, at 08:57, Fernando Pérez-García <fepegar@gmail.com> wrote:

Dear Eugenio,

I'm still having this issue, even after downloading the latest development version from the website as you suggested. My steps (yesterday):

1. Download and install FS (dev version)
2. Run recon-all
3. Download and install Matlab runtime
4. Run recon-all with brainstem structures

I get the following error:

Error:Cannot find CTF archive /usr/local/freesurfer/bin/SegmentSubject.bin.ctf

Should I try the same steps again today?

Best,

Fernando