Dear Antonin,

Thanks again for letting us know you had this problem; it turned out to be a small, silly bug in the code. I will fix it ASAP, and the updated code should be on the dev version in the next few days.

Cheers,

/Eugenio

Juan Eugenio Iglesias

ERC Senior Research Fellow

Centre for Medical Image Computing (CMIC)

University College London

http://www.jeiglesias.com

http://cmictig.cs.ucl.ac.uk/

From: <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Antonin Skoch <ansk@ikem.cz>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Friday, 17 August 2018 at 18:16
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] segmentHA_T1.sh exits with error

External Email - Use Caution

Dear experts,

I am running segmentHA_T1.sh. In about 3 subjects from 200, the script exits with following error:

In an assignment A(:) = B, the number of elements in A and B must be the same.

Error in segmentSubjectT1_autoEstimateAlveusML (line 1856)

MATLAB:subsassignnumelmismatch
Command exited with non-zero status 255

Full log file is attached. I have also uploaded whole subject (named segmentHA_T1_error.tar.gz ), including content of temporary directory hippoSF_T1_v21_right, to your server.

I am using dev version, build 2018-07-28. I am using customized recon-all, but it should not relate to this error. Could you please look at this issue?

Regards,

Antonin Skoch