yes, that sounds right. Does it look correct? That is, are areas 1/4 etc.. in the central sulcus and such?
On Mon, 25 Apr 2016, Trisanna Sprung-Much wrote:
Not a problem, Dr. Fischl!
In the meantime, could you please confirm that I am opening up a cytoarchitectonic probability map I have as .mnc
correctly?
I basically change it to a surface overlay.mgz using mri_vol2surf and then open it as an overlay with a surface in
Freeview. I can then change the thresholds using "configure overlay".
best
Trisanna
--Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Mon, Apr 25, 2016 at 6:53 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu> wrote:
Hi Trisanna
yes, but Ruopeng is on vacation to it will be a while
Bruce
On Mon, 25 Apr 2016, Trisanna Sprung-Much wrote:
Hi there
With regards to this email from March, I cannot seem to be able to change
thresholds of .labels in Freeview. Could this be added as an option?
best wishes
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Sun, Mar 13, 2016 at 1:45 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu>
wrote:
Hi Trisanna
1. the .thresh labels have been thresholded with a p-value
threshold that is "best" on our training set of
manually/architectonically defined labels.
2. Hmmm, not sure, but we have stopped development on tksurfer.
Can you try this on freeview? I can't remember if freeview
allows changing thresholds in labels, but if not Ruopeng can add
it to his list of feature requests
cheers
Bruce
On Sat, 12 Mar 2016, Trisanna Sprung-Much wrote:
Hi there
I have two questions regarding using the labels with
tksurfer:
1. What exactly has been done to change the .label
(e.g. lh BA44.label) to
.thresh.label (e.g. lh BA44.thresh.label?
2. The instructions on this page
https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps
to overlay the labels and set the Min and Max do not
seem to work for me - I
cannot seem to alter the Min from 2 and the Max from
5. Any thoughts as to
why?
thanks very much!
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
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