At 2024-02-27 01:24:00, "Douglas N. Greve" <dgreve@mgh.harvard.edu> wrote:

what did you use the do the segmentation? Include command line and terminal output

On 2/26/2024 10:46 AM, lejia2011411409 wrote:

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Dear freesurfer experts,

A large amount of subjects got segmentation white matter bad (some dark white matter cannot be recognition below 57 slices).  Attachment show this problem.  I used 'kvlEMSegment brainmask.mgz 3 4 4 '  to segment white matter again.  while there reported     kvlEMSegment: command not found. Do you have any solutions for this? Thanks in advance.

Best wishes,

Lejia

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