Dear FreeSurfer experts,

I would like to run the recon-all command in MRI images of post-stroke aphasic patients. Should I use a particular flag in the recon-all command to avoid important errors during cortical reconstruction?. We are only interested in the right hemisphere (where there is no brain injury), can I conduct the recon-all only in the right hemisphere?.

Any help would be appreciated.

Thank you very much in advance.

Best regards, 

Steve.