Hi FSers,<div><br></div><div>I am new to freesurfer. now start to use it for looking at struc-func relationship. Normally, in fsl, I employ bet for both example_func and highresh anat. it means that the func_brain and anat_brain are fed into flirt to estimate the co-registration. </div>
<div><br></div><div>here, i try to use reg_feat2anat to do this. but in this new version (4.5), it told me the betfunc command can not be found. thus I just used the version without --bet. the results in tksurfer looked not good. I am guessing it was caused by the highres with large neck areas. MY QUESTION is </div>
<div><br></div><div>how can I trigger reg_feat2anat (or whatever other commands) to take skull-stripped highres for the co-registration (in fact, the brainmask.mgz already there)? Or I was wrong, reg_feat2anat did this consideration? <br clear="all">
<br></div><div>Any suggestions would be appreciated!<br>-- <br>Xinian Zuo, Ph.D<br>Associate Research Scientist<br>Institute for Pediatric Neuroscience<br>NYU Child Study Center<br>215 Lexington Ave., 14th Floor<br>New York, NY 10016<br>
Phone: 212-263-4735<br>Public:  <a href="http://www.AboutOurKids.org">www.AboutOurKids.org</a><br>Academic: <a href="http://publicationslist.org/xinian.zuo">http://publicationslist.org/xinian.zuo</a><br>Personal: <a href="http://zuoxinian.googlepages.com">zuoxinian.googlepages.com</a><br>
Blog: <a href="http://restbrain.blogspot.com">http://restbrain.blogspot.com</a><br>
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