On 9/7/07, Doug Greve < greve@nmr.mgh.harvard.edu> wrote:

I think I fixed it last night, can you try again?

doug

On Fri, 7 Sep 2007, Jenn Segawa wrote:

> Hi,
>
> Sorry if this is redundant, I think I'm having the same segmentation problem
> as others last week, with the mri_convert command I've previously used (with
> Unix) with no problem.  I've tried setenv trick that was previously
> suggested, but it didn't make any difference.  Has anyone had any luck with
> it?
>
> Thanks,
> Jenn
>
> recon-all -autorecon1 -s PROZ06006 -i
> /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-3-1.dcm   -i
> /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000- 4-1.dcm  -i
> /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-5-1.dcm -i
> /space/multnomah/3/users/gow/PROZ06/MRI_raw/PROZ06006/681000-6-1.dcm
>
> YIELDS:
>
> INFO: SUBJECTS_DIR is /autofs/space/multnomah_003/users/gow/PROZ06/MRI
> Actual FREESURFER_HOME /autofs/space/freesurfer/centos4.0/stable4
> Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686
> i386
> GNU/Linux
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006
>
> mri_convert
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810
> 00-3-1.dcm/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/0
> 01.mgz
>
> mri_convert
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/68100
> 0-3-1.dcm/autofs/space/multnomah_003/users/gow/PROZ06/MRI/PROZ06006/mri/orig/00
> 1.mgz
> $Id: mri_convert.c,v 1.146 2007/07/26 19:26:26 greve Exp $
> reading from
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/PROZ06006/6810
> 00-3-1.dcm...
> Getting Series No
> INFO: Found 2352 files in
> /autofs/space/multnomah_003/users/gow/PROZ06/MRI_raw/P
> ROZ06006
> INFO: Scanning for Series Number 3
> Scanning Directory
> INFO: found 128 files in series
> INFO: loading series header info.
>
> RunNo = 2
> INFO: sorting.
> INFO: (256 256 128), nframes = 1, ismosaic=0
> AutoAlign matrix detected
> AutoAlign Matrix ---------------------
> 0.994  -0.056  -0.090  -8.971 ;
> 0.036   0.977  -0.211  -13.941;
> 0.100    0.207   0.973   5.321;
> 0.000   0.000   0.000   1.000;
>
> MGH DTI SeqPack Info
> 0 *tfl3d1_ns 0.000000 0
> 1 *tfl3d1_ns 0.000000 0
> 2 *tfl3d1_ns 0.000000 0
> 3 *tfl3d1_ns 0.000000 0
> 4 *tfl3d1_ns 0.000000 0
> 5 *tfl3d1_ns 0.000000 0
> 6 *tfl3d1_ns 0.000000 0
> 7 *tfl3d1_ns 0.000000 0
> 8 *tfl3d1_ns 0.000000 0
> 9 *tfl3d1_ns 0.000000 0
> 10 *tfl3d1_ns 0.000000 0
> 11 *tfl3d1_ns 0.000000 0
> 12 *tfl3d1_ns 0.000000 0
> 13 *tfl3d1_ns 0.000000 0
> 14 *tfl3d1_ns 0.000000 0
> 15 *tfl3d1_ns 0.000000 0
> 16 *tfl3d1_ns 0.000000 0
> 17 *tfl3d1_ns 0.000000 0
> 18 *tfl3d1_ns 0.000000 0
> 19 *tfl3d1_ns 0.000000 0
> 20 *tfl3d1_ns 0.000000 0
> 21 *tfl3d1_ns 0.000000 0
> 22 *tfl3d1_ns 0.000000 0
> 23 *tfl3d1_ns 0.000000 0
> 24 *tfl3d1_ns 0.000000 0
> 25 *tfl3d1_ns 0.000000 0
> 26 *tfl3d1_ns 0.000000 0
> 27 *tfl3d1_ns 0.000000 0
> 28 *tfl3d1_ns 0.000000 0
> 29 *tfl3d1_ns 0.000000 0
> 30 *tfl3d1_ns 0.000000 0
> 31 *tfl3d1_ns 0.000000 0
> 32 *tfl3d1_ns 0.000000 0
> 33 *tfl3d1_ns 0.000000 0
> 34 *tfl3d1_ns 0.000000 0
> 35 *tfl3d1_ns 0.000000 0
> 36 *tfl3d1_ns 0.000000 0
> 37 *tfl3d1_ns 0.000000 0
> 38 *tfl3d1_ns 0.000000 0
> 39 *tfl3d1_ns 0.000000 0
> 40 *tfl3d1_ns 0.000000 0
> 41 *tfl3d1_ns 0.000000 0
> 42 *tfl3d1_ns 0.000000 0
> 43 *tfl3d1_ns 0.000000 0
> 44 *tfl3d1_ns 0.000000 0
> 45 *tfl3d1_ns 0.000000 0
> 46 *tfl3d1_ns 0.000000 0
> 47 *tfl3d1_ns 0.000000 0
> 48 *tfl3d1_ns 0.000000 0
> 49 *tfl3d1_ns 0.000000 0
> 50 *tfl3d1_ns 0.000000 0
> 51 *tfl3d1_ns 0.000000 0
> 52 *tfl3d1_ns 0.000000 0
> 53 *tfl3d1_ns 0.000000 0
> 54 *tfl3d1_ns 0.000000 0
> 55 *tfl3d1_ns 0.000000 0
> 56 *tfl3d1_ns 0.000000 0
> 57 *tfl3d1_ns 0.000000 0
> 58 *tfl3d1_ns 0.000000 0
> 59 *tfl3d1_ns 0.000000 0
> 60 *tfl3d1_ns 0.000000 0
> 61 *tfl3d1_ns 0.000000 0
> 62 *tfl3d1_ns 0.000000 0
> 63 *tfl3d1_ns 0.000000 0
> 64 *tfl3d1_ns 0.000000 0
> 65 *tfl3d1_ns 0.000000 0
> 66 *tfl3d1_ns 0.000000 0
> 67 *tfl3d1_ns 0.000000 0
> 68 *tfl3d1_ns 0.000000 0
> 69 *tfl3d1_ns 0.000000 0
> 70 *tfl3d1_ns 0.000000 0
> 71 *tfl3d1_ns 0.000000 0
> 72 *tfl3d1_ns 0.000000 0
> 73 *tfl3d1_ns 0.000000 0
> 74 *tfl3d1_ns 0.000000 0
> 75 *tfl3d1_ns 0.000000 0
> 76 *tfl3d1_ns 0.000000 0
> 77 *tfl3d1_ns 0.000000 0
> 78 *tfl3d1_ns 0.000000 0
> 79 *tfl3d1_ns 0.000000 0
> 80 *tfl3d1_ns 0.000000 0
> 81 *tfl3d1_ns 0.000000 0
> 82 *tfl3d1_ns 0.000000 0
> 83 *tfl3d1_ns 0.000000 0
> 84 *tfl3d1_ns 0.000000 0
> 85 *tfl3d1_ns 0.000000 0
> 86 *tfl3d1_ns 0.000000 0
> 87 *tfl3d1_ns 0.000000 0
> 88 *tfl3d1_ns 0.000000 0
> 89 *tfl3d1_ns 0.000000 0
> 90 *tfl3d1_ns 0.000000 0
> 91 *tfl3d1_ns 0.000000 0
> 92 *tfl3d1_ns 0.000000 0
> 93 *tfl3d1_ns 0.000000 0
> 94 *tfl3d1_ns 0.000000 0
> 95 *tfl3d1_ns 0.000000 0
> 96 *tfl3d1_ns 0.000000 0
> 97 *tfl3d1_ns 0.000000 0
> 98 *tfl3d1_ns 0.000000 0
> 99 *tfl3d1_ns 0.000000 0
> 100 *tfl3d1_ns 0.000000 0
> 101 *tfl3d1_ns 0.000000 0
> 102 *tfl3d1_ns 0.000000 0
> 103 *tfl3d1_ns 0.000000 0
> 104 *tfl3d1_ns 0.000000 0
> 105 *tfl3d1_ns 0.000000 0
> 106 *tfl3d1_ns 0.000000 0
> 107 *tfl3d1_ns 0.000000 0
> 108 *tfl3d1_ns 0.000000 0
> 109 *tfl3d1_ns 0.000000 0
> 110 *tfl3d1_ns 0.000000 0
> 111 *tfl3d1_ns 0.000000 0
> 112 *tfl3d1_ns 0.000000 0
> 113 *tfl3d1_ns 0.000000 0
> 114 *tfl3d1_ns 0.000000 0
> 115 *tfl3d1_ns 0.000000 0
> 116 *tfl3d1_ns 0.000000 0
> 117 *tfl3d1_ns 0.000000 0
> 118 *tfl3d1_ns 0.000000 0
> 119 *tfl3d1_ns 0.000000 0
> 120 *tfl3d1_ns 0.000000 0
> 121 *tfl3d1_ns 0.000000 0
> 122 *tfl3d1_ns 0.000000 0
> 123 *tfl3d1_ns 0.000000 0
> 124 *tfl3d1_ns 0.000000 0
> 125 *tfl3d1_ns 0.000000 0
> 126 *tfl3d1_ns 0.000000 0
> 127 *tfl3d1_ns 0.000000 0
> Segmentation fault
> Linux dgow 2.6.9-42.0.3.ELsmp #1 SMP Fri Oct 6 06:21:39 CDT 2006 i686 i686
> i386
> GNU/Linux
>
> recon-all exited with ERRORS at Fri Sep  7 11:47:14 EDT 2007
>

--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

In order to help us help you, please follow the steps in:
surfer.nmr.mgh.harvard.edu/fswiki/BugReporting