From: freesurfer-bounces@nmr.mgh.harvard.edu <freesurfer-bounces@nmr.mgh.harvard.edu> on behalf of Lutz,Olivia (BIDMC - Psychiatry) <olutz@bidmc.harvard.edu>
Sent: Monday, August 20, 2018 4:55:24 PM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] Flipped left to right hemisphere subjects

Hi Doug and Bruce,

thank you for the quick reply. As a follow-up question, we've edited our brainmasks for a dataset and want to flip some subjects left to right. I found instructions to flip the scans, however they are for the nu.mgz file (https://surfer.nmr.mgh.harvard.edu/fswiki/LeftRightReversal). Is is possible to apply this

mri_convert --in_orientation command to change the left and right labels of the brainmask so we don't have to re-edit as opposed to applying it to the nu.mgz file and regenerating the brainmask?

Thanks!

Olivia

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