You can load surface-based time course data as a surface overlay, I believe. But there is no function to view the scatter plot. The time course window is for volume only.

Ruopeng

On Feb 26, 2014, at 10:13 PM, Douglas Greve <greve@nmr.mgh.harvard.edu> wrote:


That command definitely will not work. When you ran the command I sent, did it at least show you something on the surface?

Ruopeng, is there a way to load a surface-based timecourse in freeview?

doug




On 2/26/14 9:11 PM, charujing123 wrote:
Hi doug,
Thanks doug.
I am sorry to describe my question no very clearly.It did work,but I want to view time course of lh.score.thickness.00.mgh vertex by vertex. So I need to try -v option to view time course manually as you just told me. However I cannot view anything but darkness when I try ""freeview -v lh.score.thickness.00.mgh"". Is there any tool or method to present a time course window(or a colume of numbers) when I click one voxel or vertex. And numbers in time course window will change when I click other voxel or vertex.
Thanks,
All the best.
Rujing Zha
 
2014-02-27
charujing123
发件人：Douglas N Greve <greve@nmr.mgh.harvard.edu>
发送时间：2014-02-27 01:51
主题：Re: [Freesurfer] time course in mri_info lh.gender_age.thickness.10.mgh
收件人："freesurfer"<freesurfer@nmr.mgh.harvard.edu>
抄送：
 
Try this 
freeview -f  
$SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh 
Don't use -v in this case because -v is for a volumes and volume  
overlays and all your data are surface overlays 
 
 
On 02/25/2014 08:38 PM, charujing123 wrote: 
> Hi doug and others, 
> It will be highly appreciated,if anyone can help me. 
> Thanks. 
> All the best. 
> Rujing Zhas 
> 2014-02-26 
> ------------------------------------------------------------------------ 
> charujing123 
> ------------------------------------------------------------------------ 
> *发件人：*"charujing123"<charujing123@163.com> 
> *发送时间：*2014-02-25 12:01 
> *主题：*Re: [Freesurfer] time course in mri_info  
> lh.gender_age.thickness.10.mgh 
> *抄送：* 
> Hi doug, 
> When I try to do this by "freeview -f  
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh  
> -v lh.score.thickness.00.mgh" or "freeview -v  
> lh.score.thickness.00.mgh", it did create a window of time course.  
> However there is nothing in the freeview window except  
> darkness((i.e.fig1 in the attachment)). By the way, I can see  
> something by "freeview -f  
> $SUBJECTS_DIR/fsaverage/surf/lh.inflated:overlay=$SUBJECTS_DIR/glm/lh.score.thickness.00.mgh"(i.e.fig2  
> in the attachment). All of these can be got in the attachment. 
> Thanks. 
> All the best. 
> Rujing Zha 
> 2014-02-25 
> ------------------------------------------------------------------------ 
> charujing123 
> ------------------------------------------------------------------------ 
> *发件人：*"charujing123"<charujing123@163.com> 
> *发送时间：*2014-02-25 10:28 
> *主题：*Re: [Freesurfer] time course in mri_info  
> lh.gender_age.thickness.10.mgh 
> *抄送：* 
> Thanks doug 
> All the best. 
> Rujing Zha 
> 2014-02-25 
> ------------------------------------------------------------------------ 
> charujing123 
> ------------------------------------------------------------------------ 
> *发件 人：*Douglas N Greve <greve@nmr.mgh.harvard.edu> 
> *发送时间：*2014-02-25 00:31 
> *主题：*Re: [Freesurfer] time course in mri_info  
> lh.gender_age.thickness.10.mgh 
> *收件 人：*"freesurfer"<freesurfer@nmr.mgh.harvard.edu> 
> *抄送：* 
> On 02/23/2014 08:32 PM, charujing123 wrote: 
> > Hi all, 
> > I have two questions. 
> > 1,If I want to get the value of specific voxel from the 
> > lh.gender_age.thickness.10.mgh, which code can I use to perform it? 
> You can go to that vertex when you have it loaded into FreeView, 
> otherwise you can load it into matlab (MRIread.m). Make sure to account 
> for the fact that matlab uses 1-based indices whereas FS uses 0-based. 
> > 2,How to graph the time course of specfic voxel from the 
> > lh.gender_age.thickness.10.mgh by freeview? 
> Add "-v lh.gender_age.thickness.10.mgh" to your freeview command line 
> > Thanks. 
> > All the best. 
> > Rujing Zha 
> > 2014-02-24 
> >  
> ------------------------------------------------------------------------ 
> > charujing123 
> > 
> > 
> > _______________________________________________ 
> > Freesurfer mailing list 
> --  
> Douglas N. Greve, Ph.D. 
> MGH-NMR Center 
> Phone Number: 617-724-2358 
> Fax: 617-726-7422 
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting 
> _______________________________________________ 
> Freesurfer mailing list 
> The information in this e-mail is intended only for the person to whom  
> it is 
> addressed. If you believe this e-mail was sent to you in error and the  
> e-mail 
> contains patient information, please contact the Partners Compliance  
> HelpLine at 
> http://www.partners.org/complianceline . If the e-mail was sent to you  
> in error 
> but does not contain patient information, please contact the sender  
> and properly 
> dispose of the e-mail. 
> 
> 
> _______________________________________________ 
> Freesurfer mailing list 
 
--  
Douglas N. Greve, Ph.D. 
MGH-NMR Center 
Phone Number: 617-724-2358 
Fax: 617-726-7422 
 
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting 
 
_______________________________________________ 
Freesurfer mailing list 


_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer