It says:
$ ln -s /usr/local/freesurfer/subjects/fsaverage
ln: failed to create symbolic link `./fsaverage': Operation not supported
________________________________________
From: freesurfer-bounces@nmr.mgh.harvard.edu [freesurfer-bounces@nmr.mgh.harvard.edu] on behalf of Bruce Fischl [fischl@nmr.mgh.harvard.edu]
Sent: Friday, August 30, 2013 11:04 AM
To: Boric, Katica A.
Cc: freesurfer@nmr.mgh.harvard.edu
Subject: Re: [Freesurfer] error in MRI processing
can you run:
cd /mnt/hgfs/Linux_Share/subjects
ln -s /usr/local/freesurfer/subjects/fsaverage
and tell us what it says?
Bruce
On Fri, 30 Aug 2013, Boric,
Katica A.
wrote:
> Hi Bruce!
> Thanks for your fast response.
> /usr/local/freesurfer/subjects/fsaverage does exists!
>
> Thanks again,
> Katica
> ________________________________________
> From: Bruce Fischl [fischl@nmr.mgh.harvard.edu]
> Sent: Friday, August 30, 2013 10:51 AM
> To: Boric, Katica A.
> Cc: freesurfer@nmr.mgh.harvard.edu
> Subject: Re: [Freesurfer] error in MRI processing
>
> Hi Katica
>
> does /usr/local/freesurfer/subjects/fsaverage exist? Do you have write
> access to /mnt/hgfs/Linux_Share/subjects?
>
> cheers
> Bruce
>
> On Fri, 30 Aug 2013, Boric, Katica A. wrote:
>
>> Hi everyone!
>> I am new to freesurfer, and I was processing and MRI using "recon-all
>> -autorecon1 -autorecon2 -autorecon3" command and I have a message that the
>> processing was exited with ERRORS. When checking the recon-all. log it
>> appears that these are the error (highlighted in yellow):
>>
>> #@# BA Labels lh Thu Aug 29 22:14:42 PDT 2013
>> INFO: fsaverage subject does not exist in SUBJECTS_DIR
>> INFO: Creating symlink to fsaverage subject...
>>
>> cd /mnt/hgfs/Linux_Share/subjects; ln -s
>> /usr/local/freesurfer/subjects/fsaverage; cd -
>>
>> ln: failed to create symbolic link `./fsaverage': Operation not supported
>>
>> mri_label2label --srcsubject fsaverage --srclabel
>> /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label --trgsubject
>> MGH013_SurferOutput --trglabel ./lh.BA1.label --hemi lh --regmethod surface
>>
>> No such file or directory
>> mri_label2label: could not open label file
>> /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label
>>
>> srclabel = /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label
>> srcsubject = fsaverage
>> trgsubject = MGH013_SurferOutput
>> trglabel = ./lh.BA1.label
>> regmethod = surface
>>
>> srchemi = lh
>> trghemi = lh
>> trgsurface = white
>> srcsurfreg = sphere.reg
>> trgsurfreg = sphere.reg
>> usehash = 1
>> Use ProjAbs = 0, 0
>> Use ProjFrac = 0, 0
>> DoPaint 0
>>
>> SUBJECTS_DIR /mnt/hgfs/Linux_Share/subjects
>> FREESURFER_HOME /usr/local/freesurfer
>> Loading source label.
>> Invalid argument
>> ERROR reading /mnt/hgfs/Linux_Share/subjects/fsaverage/label/lh.BA1.label
>> Linux localhost.localdomain 3.6.11-4.fc16.x86_64 #1 SMP Tue Jan 8 20:57:42
>> UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
>>
>> recon-all -s MGH013_SurferOutput exited with ERRORS at Thu Aug 29 22:14:43
>> PDT 2013
>>
>> If any of you could give us any advice on how to fix this we would really
>> appreciate it!
>> Thank you very much,
>>
>> Cheers,
>> Katica
>>
>>
>>
>
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>
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