Hi Saloni

Does that directory exist? What is your SUBJECTS_DIR set to? And have you
run recon-all -qcache on all your subjects?

cheers
Bruce

On Mon, 26 May 2014, Saloni Sharma wrote:

> Dear Freesurfers,
>
> So I have followed all the instructions given on your website in order to
> use qdec. When i analyse the images only using a file group.levels that
> defines the two groups I'm comparing the analysis runs fine and gives me
> results, but when I add gender, for instance, as a discrete factor, it loads
> the data successfully but when I click analyse it shows the following error:
>
> Error in Analyze: Couldn't open file/tallaght-disk4/IMAGEN/Saloni_data/freesurfer_output/000072882642/surf/lh.t
> hickness.fwhm10.fsaverage.mgh
>
> Please guide me as to what is going wrong and what I can do to fix it. I
> would appreciate a quick response as my thesis submission is due in two
> weeks and I cannot proceed until this problem is sorted.
>
> Thanks and regards,
> Saloni
>
>

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