Wed Feb 3 09:34:36 PST 2021 /home/bdl/freesurfer/subjects/SD06 /home/bdl/freesurfer/bin/recon-all -s SD06 -i /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm subjid SD06 setenv SUBJECTS_DIR /home/bdl/freesurfer/subjects FREESURFER_HOME /home/bdl/freesurfer Actual FREESURFER_HOME /home/bdl/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 65536 kbytes maxproc 127398 maxlocks unlimited maxsignal 127398 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32662492 4888284 23344932 198704 4429276 27105996 Swap: 36112380 0 36112380 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_register.c,v 1.96.2.3 2016/10/27 22:25:10 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_label ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_label.c,v 1.113.2.2 2016/10/27 22:25:10 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_pretess ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_pretess.c,v 1.22 2013/08/30 18:12:25 mreuter Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fill ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fill.c,v 1.119 2011/10/25 14:09:58 fischl Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_tessellate ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_concatenate_lta.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_concatenate_lta.c,v 1.16 2015/11/21 00:06:20 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize_tp2 ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize_tp2.c,v 1.8 2011/03/02 00:04:23 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_smooth ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_smooth.c,v 1.30 2014/01/21 18:48:21 fischl Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_inflate ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_inflate.c,v 1.45 2016/01/20 23:42:15 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature.c,v 1.31 2011/03/02 00:04:30 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_sphere ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_fix_topology ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_topo_fixer ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_topo_fixer.cpp,v 1.29 2011/03/02 00:04:34 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_ca_label ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_ca_label.c,v 1.37 2014/02/04 17:46:42 fischl Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:36-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:37-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /home/bdl/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/bdl/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### /home/bdl/freesurfer/subjects/SD06 mri_convert /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm /home/bdl/freesurfer/subjects/SD06/mri/orig/001.mgz mri_convert.bin /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm /home/bdl/freesurfer/subjects/SD06/mri/orig/001.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm... Starting DICOMRead2() dcmfile = /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm dcmdir = /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm break DICOMRead.c:5228 Ref Series No = 1501 Found 257 files, checking for dicoms ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0002.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0003.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0004.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0005.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0006.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0007.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0008.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0009.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0010.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0011.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0012.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0013.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0014.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0015.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0016.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0017.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0018.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0019.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0020.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0021.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0022.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0023.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0024.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0025.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0026.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0027.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0028.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0029.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0030.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0031.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0032.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0033.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0034.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0035.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0036.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0037.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0038.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0039.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0040.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0041.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0042.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0043.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0044.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0045.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0046.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0047.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0048.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0049.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0050.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0051.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0052.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0053.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0054.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0055.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0056.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0057.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0058.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0059.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0060.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0061.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0062.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0063.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0064.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0065.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0066.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0067.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0068.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0069.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0070.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0071.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0072.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0073.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0074.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0075.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0076.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0077.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0078.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0079.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0080.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0081.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0082.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0083.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0084.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0085.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0086.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0087.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0088.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0089.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0090.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0091.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0092.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0093.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0094.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0095.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0096.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0097.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0098.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0099.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0100.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0101.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0102.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0103.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0104.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0105.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0106.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0107.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0108.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0109.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0110.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0111.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0112.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0113.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0114.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0115.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0116.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0117.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0118.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0119.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0120.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0121.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0122.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0123.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0124.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0125.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0126.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0127.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0128.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0129.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0130.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0131.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0132.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0133.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0134.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0135.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0136.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0137.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0138.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0139.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0140.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0141.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0142.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0143.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0144.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0145.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0146.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0147.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0148.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0149.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0150.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0151.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0152.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0153.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0154.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0155.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0156.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0157.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0158.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0159.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0160.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0161.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0162.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0163.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0164.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0165.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0166.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0167.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0168.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0169.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0170.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0171.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0172.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0173.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0174.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0175.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0176.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0177.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0178.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0179.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0180.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0181.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0182.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0183.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0184.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0185.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0186.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0187.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0188.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0189.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0190.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0191.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0192.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0193.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0194.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0195.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0196.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0197.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0198.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0199.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0200.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0201.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0202.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0203.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0204.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0205.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0206.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0207.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0208.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0209.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0210.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0211.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0212.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0213.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0214.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0215.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0216.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0217.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0218.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0219.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0220.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0221.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0222.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0223.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0224.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0225.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0226.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0227.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0228.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0229.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0230.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0231.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0232.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0233.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0234.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0235.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0236.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0237.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0238.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0239.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0240.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0241.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0242.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0243.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0244.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0245.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0246.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0247.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0248.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0249.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0250.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0251.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0252.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0253.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0254.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0255.dcm break DICOMRead.c:5228 Found 255 dicom files in series. ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0001.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0002.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0003.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0004.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0005.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0006.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0007.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0008.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0009.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0010.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0011.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0012.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0013.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0014.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0015.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0016.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0017.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0018.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0019.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0020.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0021.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0022.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0023.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0024.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0025.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0026.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0027.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0028.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0029.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0030.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0031.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0032.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0033.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0034.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0035.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0036.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0037.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0038.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0039.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0040.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0041.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0042.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0043.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0044.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0045.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0046.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0047.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0048.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0049.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0050.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0051.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0052.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0053.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0054.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0055.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0056.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0057.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0058.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0059.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0060.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0061.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0062.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0063.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0064.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0065.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0066.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0067.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0068.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0069.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0070.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0071.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0072.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0073.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0074.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0075.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0076.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0077.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0078.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0079.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0080.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0081.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0082.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0083.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0084.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0085.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0086.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0087.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0088.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0089.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0090.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0091.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0092.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0093.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0094.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0095.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0096.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0097.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0098.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0099.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0100.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0101.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0102.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0103.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0104.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0105.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0106.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0107.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0108.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0109.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0110.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0111.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0112.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0113.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0114.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0115.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0116.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0117.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0118.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0119.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0120.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0121.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0122.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0123.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0124.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0125.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0126.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0127.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0128.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0129.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0130.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0131.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0132.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0133.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0134.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0135.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0136.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0137.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0138.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0139.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0140.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0141.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0142.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0143.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0144.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0145.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0146.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0147.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0148.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0149.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0150.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0151.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0152.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0153.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0154.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0155.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0156.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0157.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0158.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0159.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0160.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0161.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0162.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0163.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0164.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0165.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0166.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0167.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0168.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0169.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0170.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0171.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0172.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0173.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0174.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0175.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0176.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0177.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0178.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0179.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0180.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0181.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0182.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0183.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0184.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0185.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0186.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0187.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0188.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0189.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0190.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0191.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0192.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0193.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0194.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0195.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0196.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0197.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0198.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0199.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0200.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0201.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0202.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0203.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0204.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0205.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0206.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0207.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0208.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0209.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0210.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0211.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0212.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0213.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0214.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0215.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0216.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0217.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0218.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0219.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0220.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0221.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0222.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0223.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0224.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0225.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0226.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0227.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0228.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0229.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0230.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0231.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0232.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0233.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0234.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0235.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0236.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0237.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0238.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0239.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0240.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0241.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0242.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0243.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0244.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0245.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0246.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0247.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0248.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0249.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0250.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0251.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0252.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0253.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0254.dcm break DICOMRead.c:5228 ERROR: don't know how to get DWI parameters from ---- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /home/bdl/Desktop/iEEGview-recon/SD06/DICOM/MRI/IM-0027-0255.dcm break DICOMRead.c:5228 First Sorting Computing Slice Direction Vs: 0 0.94 0 Vs: 0 1 0 Second Sorting IsDWI = 0, IsPhilipsDWI = 0 Counting frames nframes = 1 nslices = 255 ndcmfiles = 255 PE Dir = UNKNOWN (dicom read) Loading pixel data TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (-0, -1, 0) writing to /home/bdl/freesurfer/subjects/SD06/mri/orig/001.mgz... Started at Wed Feb 3 09:34:36 PST 2021 Ended at Wed Feb 3 09:34:45 PST 2021 #@#%# recon-all-run-time-hours 0.002 recon-all -s SD06 finished without error at Wed Feb 3 09:34:45 PST 2021 New invocation of recon-all Wed Feb 3 09:34:45 PST 2021 /home/bdl/freesurfer/subjects/SD06 /home/bdl/freesurfer/bin/recon-all -s SD06 -all subjid SD06 setenv SUBJECTS_DIR /home/bdl/freesurfer/subjects FREESURFER_HOME /home/bdl/freesurfer Actual FREESURFER_HOME /home/bdl/freesurfer build-stamp.txt: freesurfer-Linux-centos6_x86_64-stable-pub-v6.0.0-2beb96c Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux cputime unlimited filesize unlimited datasize unlimited stacksize 8192 kbytes coredumpsize 0 kbytes memoryuse unlimited vmemoryuse unlimited descriptors 8192 memorylocked 65536 kbytes maxproc 127398 maxlocks unlimited maxsignal 127398 maxmessage 819200 maxnice 0 maxrtprio 0 maxrttime unlimited total used free shared buff/cache available Mem: 32662492 4873164 23024844 195964 4764484 27124044 Swap: 36112380 0 36112380 ######################################## program versions used $Id: recon-all,v 1.580.2.16 2017/01/18 14:11:24 zkaufman Exp $ $Id: mri_motion_correct.fsl,v 1.15 2016/02/16 17:17:20 zkaufman Exp $ mri_convert.bin -all-info ProgramName: mri_convert.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 FLIRT version 5.5 $Id: talairach_avi,v 1.13 2015/12/23 04:25:17 greve Exp $ mri_convert.bin --version stable6 ProgramName: tkregister2_cmdl ProgramArguments: --all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: tkregister2.c,v 1.132.2.1 2016/08/02 21:17:29 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 ProgramName: mri_make_uchar ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_make_uchar.c,v 1.4 2011/03/02 00:04:14 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_normalize.c,v 1.88.2.3 2016/12/27 16:47:13 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_watershed ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_watershed.cpp,v 1.103 2016/06/17 18:00:49 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_gcut ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_gcut.cpp,v 1.14 2011/03/02 00:04:16 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segment ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segment.c,v 1.43.2.1 2016/10/27 22:24:52 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_label2label.bin ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_label2label.c,v 1.48.2.2 2016/12/12 14:15:26 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_em_register ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_em_register.c,v 1.105.2.1 2016/10/27 22:25:10 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_ca_normalize ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_ca_normalize.c,v 1.67.2.2 2016/10/27 22:25:09 zkaufman Exp $ User: bdl 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Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_euler_number ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_euler_number.c,v 1.10 2013/01/14 22:39:14 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_make_surfaces ProgramArguments: -all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_make_surfaces.c,v 1.164.2.4 2016/12/13 22:26:32 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_register ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_register.c,v 1.63 2016/01/20 23:43:04 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_volmask ProgramArguments: --all-info ProgramVersion: $Name: $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_volmask.cpp,v 1.26.2.2 2016/11/18 20:05:18 zkaufman Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_anatomical_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_anatomical_stats.c,v 1.79 2016/03/14 15:15:34 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mrisp_paint ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mrisp_paint.c,v 1.12 2016/03/22 14:47:57 fischl Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_curvature_stats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_curvature_stats.c,v 1.65 2015/06/04 20:50:51 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mris_calc ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mris_calc.c,v 1.54.2.1 2016/09/27 18:51:28 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ ProgramName: mri_robust_register.bin ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_register.cpp,v 1.77 2016/01/20 23:36:17 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ ProgramName: mri_robust_template ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_robust_template.cpp,v 1.54 2016/05/05 21:17:08 mreuter Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_and ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_and.c,v 1.4 2011/03/02 00:04:13 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_or ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_or.c,v 1.5 2013/03/20 15:03:29 lzollei Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_fuse_segmentations ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_fuse_segmentations.c,v 1.8 2011/03/02 00:04:15 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_segstats ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2021/02/03-17:34:45-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: bdl Machine: HHS-SLH-F036878 Platform: Linux PlatformVersion: 5.4.0-65-generic CompilerName: GCC CompilerVersion: 40400 ####################################### GCADIR /home/bdl/freesurfer/average GCA RB_all_2016-05-10.vc700.gca GCASkull RB_all_withskull_2016-05-10.vc700.gca AvgCurvTif folding.atlas.acfb40.noaparc.i12.2016-08-02.tif GCSDIR /home/bdl/freesurfer/average GCS DKaparc.atlas.acfb40.noaparc.i12.2016-08-02.gcs ####################################### #-------------------------------------------- #@# MotionCor Wed Feb 3 09:34:45 PST 2021 Found 1 runs /home/bdl/freesurfer/subjects/SD06/mri/orig/001.mgz Checking for (invalid) multi-frame inputs... WARNING: only one run found. This is OK, but motion correction cannot be performed on one run, so I'll copy the run to rawavg and continue. cp /home/bdl/freesurfer/subjects/SD06/mri/orig/001.mgz /home/bdl/freesurfer/subjects/SD06/mri/rawavg.mgz /home/bdl/freesurfer/subjects/SD06 mri_convert /home/bdl/freesurfer/subjects/SD06/mri/rawavg.mgz /home/bdl/freesurfer/subjects/SD06/mri/orig.mgz --conform mri_convert.bin /home/bdl/freesurfer/subjects/SD06/mri/rawavg.mgz /home/bdl/freesurfer/subjects/SD06/mri/orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from /home/bdl/freesurfer/subjects/SD06/mri/rawavg.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (-0, -1, 0) changing data type from short to uchar (noscale = 0)... MRIchangeType: Building histogram Reslicing using trilinear interpolation writing to /home/bdl/freesurfer/subjects/SD06/mri/orig.mgz... mri_add_xform_to_header -c /home/bdl/freesurfer/subjects/SD06/mri/transforms/talairach.xfm /home/bdl/freesurfer/subjects/SD06/mri/orig.mgz /home/bdl/freesurfer/subjects/SD06/mri/orig.mgz INFO: extension is mgz #-------------------------------------------- #@# Talairach Wed Feb 3 09:35:02 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /home/bdl/freesurfer/subjects/SD06/mri /home/bdl/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Feb 3 09:35:02 PST 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.13519 /home/bdl/freesurfer/subjects/SD06/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.13519/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.13519/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.13519/nu0.mnc... -------------------------------------------------------- Iteration 1 Wed Feb 3 09:35:03 PST 2021 nu_correct -clobber ./tmp.mri_nu_correct.mni.13519/nu0.mnc ./tmp.mri_nu_correct.mni.13519/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.13519/0/ -iterations 1000 -distance 50 [bdl@HHS-SLH-F036878:/home/bdl/freesurfer/subjects/SD06/mri/] [2021-02-03 09:35:03] running: /home/bdl/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.13519/0/ ./tmp.mri_nu_correct.mni.13519/nu0.mnc ./tmp.mri_nu_correct.mni.13519/nu1.imp Processing:.................................................................Done 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Processing:.................................................................Done Number of iterations: 62 CV of field change: 0.000974363 mri_convert ./tmp.mri_nu_correct.mni.13519/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.13519/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.13519/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Wed Feb 3 09:35:38 PST 2021 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm talairach_avi log file is transforms/talairach_avi.log... Started at Wed Feb 3 09:35:38 PST 2021 Ended at Wed Feb 3 09:35:56 PST 2021 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Wed Feb 3 09:35:58 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0641, pval=0.0034 < threshold=0.0050) Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach INFO: Retrying Talairach align using 3T-based atlas... #-------------------------------------------- #@# Talairach Wed Feb 3 09:35:58 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /home/bdl/freesurfer/subjects/SD06/mri /home/bdl/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Feb 3 09:35:58 PST 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.14688 /home/bdl/freesurfer/subjects/SD06/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.14688/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.14688/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.14688/nu0.mnc... -------------------------------------------------------- Iteration 1 Wed Feb 3 09:35:59 PST 2021 nu_correct -clobber ./tmp.mri_nu_correct.mni.14688/nu0.mnc ./tmp.mri_nu_correct.mni.14688/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.14688/0/ -iterations 1000 -distance 50 [bdl@HHS-SLH-F036878:/home/bdl/freesurfer/subjects/SD06/mri/] [2021-02-03 09:35:59] running: /home/bdl/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.14688/0/ ./tmp.mri_nu_correct.mni.14688/nu0.mnc ./tmp.mri_nu_correct.mni.14688/nu1.imp Processing:.................................................................Done 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Processing:.................................................................Done Number of iterations: 62 CV of field change: 0.000974363 mri_convert ./tmp.mri_nu_correct.mni.14688/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.14688/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.14688/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Wed Feb 3 09:36:34 PST 2021 mri_nu_correct.mni done talairach_avi --i orig_nu.mgz --xfm transforms/talairach.auto.xfm --atlas 3T18yoSchwartzReactN32_as_orig talairach_avi log file is transforms/talairach_avi.log... Started at Wed Feb 3 09:36:34 PST 2021 Ended at Wed Feb 3 09:36:52 PST 2021 talairach_avi done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Wed Feb 3 09:36:54 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.3054, pval=0.0254 >= threshold=0.0050) awk -f /home/bdl/freesurfer/bin/extract_talairach_avi_QA.awk /home/bdl/freesurfer/subjects/SD06/mri/transforms/talairach_avi.log tal_QC_AZS /home/bdl/freesurfer/subjects/SD06/mri/transforms/talairach_avi.log TalAviQA: 0.91575 z-score: -14 WARNING: Talairach QA check failed! z-score of -14 is <= threshold of -9 Manual Talairach alignment may be necessary, or include the -notal-check flag to skip this test, making sure the -notal-check flag follows -all or -autorecon1 in the command string. See: http://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/Talairach INFO: Trying MINC mritotal to perform Talairach align... #-------------------------------------------- #@# Talairach Wed Feb 3 09:36:54 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 /home/bdl/freesurfer/subjects/SD06/mri /home/bdl/freesurfer/bin/mri_nu_correct.mni --no-rescale --i orig.mgz --o orig_nu.mgz --n 1 --proto-iters 1000 --distance 50 nIters 1 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Feb 3 09:36:54 PST 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.15875 /home/bdl/freesurfer/subjects/SD06/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.15875/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.15875/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.15875/nu0.mnc... -------------------------------------------------------- Iteration 1 Wed Feb 3 09:36:55 PST 2021 nu_correct -clobber ./tmp.mri_nu_correct.mni.15875/nu0.mnc ./tmp.mri_nu_correct.mni.15875/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.15875/0/ -iterations 1000 -distance 50 [bdl@HHS-SLH-F036878:/home/bdl/freesurfer/subjects/SD06/mri/] [2021-02-03 09:36:55] running: /home/bdl/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.15875/0/ ./tmp.mri_nu_correct.mni.15875/nu0.mnc ./tmp.mri_nu_correct.mni.15875/nu1.imp Processing:.................................................................Done 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Processing:.................................................................Done Number of iterations: 62 CV of field change: 0.000974363 mri_convert ./tmp.mri_nu_correct.mni.15875/nu1.mnc orig_nu.mgz --like orig.mgz --conform mri_convert.bin ./tmp.mri_nu_correct.mni.15875/nu1.mnc orig_nu.mgz --like orig.mgz --conform $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.15875/nu1.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz changing data type from float to uchar (noscale = 0)... MRIchangeType: Building histogram writing to orig_nu.mgz... Wed Feb 3 09:37:30 PST 2021 mri_nu_correct.mni done talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm /home/bdl/freesurfer/subjects/SD06/mri /home/bdl/freesurfer/bin/talairach --i orig_nu.mgz --xfm transforms/talairach.auto.xfm $Id: talairach,v 1.8 2016/02/16 17:17:20 zkaufman Exp $ Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Feb 3 09:37:30 PST 2021 tmpdir is transforms/tmp.talairach.16872 /home/bdl/freesurfer/subjects/SD06/mri mri_convert orig_nu.mgz transforms/tmp.talairach.16872/src.mnc mri_convert.bin orig_nu.mgz transforms/tmp.talairach.16872/src.mnc $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig_nu.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) writing to transforms/tmp.talairach.16872/src.mnc... -------------------------------------------- mritotal -verbose -debug -clobber -modeldir /home/bdl/freesurfer/mni/bin/../share/mni_autoreg -protocol icbm transforms/tmp.talairach.16872/src.mnc transforms/talairach.auto.xfm Transforming slices:................................................................................................................................Done Copying chunks:......................................................................................................................................................Done. Copying chunks:..........................................................................................................Done. Transforming slices:......................................................................................................................................................Done Copying chunks:....................................................................................................................Done. Copying chunks:....................................................................................................................Done. Source volume size: 74 by 106 by 106 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 125.962 Source min/max voxel= -0.000 125.962 Target volume size: 58 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.970 123.710 Target min/max voxel = -0.000 123.710 AFTER init_params() Transform matrix = 1.0000 0.0000 0.0000 2.9931 0.0000 1.0000 0.0000 -24.4950 0.0000 0.0000 1.0000 8.1166 Transform center = -2.665 6.904 1.338 Transform rotations = 0.000 0.000 0.000 Transform trans = 2.993 -24.495 8.117 Transform scale = 1.000 1.000 1.000 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -47.250 Lattice count = 43 55 29 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = -0.000 198.083 Source min/max voxel= -0.000 198.083 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= -0.000 144.070 Target min/max voxel = -0.000 144.070 AFTER init_params() Transform matrix = 0.9377 -0.1668 -0.0311 0.7594 0.1665 0.9382 -0.0111 -7.2634 0.0325 0.0055 0.9523 26.9780 Transform center = -2.665 6.904 1.338 Transform rotations = 0.006 -0.034 0.176 Transform trans = -0.268 -8.149 26.865 Transform scale = 0.953 0.953 0.953 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -85.095 -125.510 -57.250 Lattice count = 43 55 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.077 20.057 Source min/max voxel= 0.077 20.292 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8723 -0.2513 -0.1616 -2.2158 0.1949 0.8566 -0.2802 -12.3108 0.2265 0.2309 0.8635 29.0630 Transform center = -2.665 6.904 1.338 Transform rotations = 0.261 -0.248 0.220 Transform trans = -3.827 -14.195 29.871 Transform scale = 0.922 0.922 0.922 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.077 20.057 Source min/max voxel= 0.077 20.292 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8850 -0.0013 -0.1272 3.1259 -0.0580 0.7915 -0.4118 -7.2288 0.1132 0.4159 0.7833 5.6577 Transform center = -2.665 6.904 1.338 Transform rotations = 0.488 -0.127 -0.065 Transform trans = 3.253 -9.065 7.937 Transform scale = 0.894 0.894 0.894 Transform shear = 0.000 0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.077 20.057 Source min/max voxel= 0.077 20.292 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8915 -0.0086 0.0064 1.4036 0.0111 0.9019 -0.3352 -1.4330 -0.0032 0.3323 0.8940 1.7701 Transform center = -2.665 6.904 1.338 Transform rotations = 0.356 0.003 0.012 Transform trans = 1.642 -2.588 3.931 Transform scale = 0.892 0.962 0.954 Transform shear = -0.000 -0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Source volume size: 84 by 116 by 116 Source voxel size = 2.000 2.000 2.000 Source min/max real range = 0.077 20.057 Source min/max voxel= 0.077 20.292 Target volume size: 68 by 110 by 86 Target voxel = 2.000 2.000 2.000 Target min/max real range= 0.037 11.652 Target min/max voxel = 0.037 11.652 AFTER init_params() Transform matrix = 0.8910 0.0132 0.0030 2.3027 -0.0129 0.9373 -0.3017 -1.3869 -0.0073 0.2861 0.8890 0.5629 Transform center = -2.665 6.904 1.338 Transform rotations = 0.311 0.008 -0.013 Transform trans = 2.688 -2.189 2.409 Transform scale = 0.891 0.985 0.934 Transform shear = 0.000 -0.000 0.000 Target volume is smallest Lattice step size = 4.000 4.000 4.000 Lattice start = -65.095 -105.510 -57.250 Lattice count = 35 46 34 Wed Feb 3 09:37:35 PST 2021 talairach done cp transforms/talairach.auto.xfm transforms/talairach.xfm #-------------------------------------------- #@# Talairach Failure Detection Wed Feb 3 09:37:37 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri talairach_afd -T 0.005 -xfm transforms/talairach.xfm talairach_afd: Talairach Transform: transforms/talairach.xfm OK (p=0.1725, pval=0.0085 >= threshold=0.0050) #-------------------------------------------- #@# Nu Intensity Correction Wed Feb 3 09:37:37 PST 2021 mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 /home/bdl/freesurfer/subjects/SD06/mri /home/bdl/freesurfer/bin/mri_nu_correct.mni --i orig.mgz --o nu.mgz --uchar transforms/talairach.xfm --n 2 nIters 2 $Id: mri_nu_correct.mni,v 1.27 2016/02/26 16:19:49 mreuter Exp $ Linux HHS-SLH-F036878 5.4.0-65-generic #73~18.04.1-Ubuntu SMP Tue Jan 19 09:02:24 UTC 2021 x86_64 x86_64 x86_64 GNU/Linux Wed Feb 3 09:37:37 PST 2021 Program nu_correct, built from: Package MNI N3, version 1.12.0, compiled by nicks@terrier (x86_64-unknown-linux-gnu) on 2015-06-19 at 01:25:34 /usr/bin/bc tmpdir is ./tmp.mri_nu_correct.mni.17032 /home/bdl/freesurfer/subjects/SD06/mri mri_convert orig.mgz ./tmp.mri_nu_correct.mni.17032/nu0.mnc -odt float mri_convert.bin orig.mgz ./tmp.mri_nu_correct.mni.17032/nu0.mnc -odt float $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from orig.mgz... TR=7.44, TE=3.16, TI=450.00, flip angle=20.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) changing data type from uchar to float (noscale = 0)... writing to ./tmp.mri_nu_correct.mni.17032/nu0.mnc... -------------------------------------------------------- Iteration 1 Wed Feb 3 09:37:38 PST 2021 nu_correct -clobber ./tmp.mri_nu_correct.mni.17032/nu0.mnc ./tmp.mri_nu_correct.mni.17032/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.17032/0/ [bdl@HHS-SLH-F036878:/home/bdl/freesurfer/subjects/SD06/mri/] [2021-02-03 09:37:38] running: /home/bdl/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.17032/0/ ./tmp.mri_nu_correct.mni.17032/nu0.mnc ./tmp.mri_nu_correct.mni.17032/nu1.imp Processing:.................................................................Done 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Processing:.................................................................Done Number of iterations: 50 CV of field change: 0.00109897 -------------------------------------------------------- Iteration 2 Wed Feb 3 09:38:01 PST 2021 nu_correct -clobber ./tmp.mri_nu_correct.mni.17032/nu1.mnc ./tmp.mri_nu_correct.mni.17032/nu2.mnc -tmpdir ./tmp.mri_nu_correct.mni.17032/1/ [bdl@HHS-SLH-F036878:/home/bdl/freesurfer/subjects/SD06/mri/] [2021-02-03 09:38:01] running: /home/bdl/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 50 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1.0e-7 -distance 200 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.17032/1/ ./tmp.mri_nu_correct.mni.17032/nu1.mnc ./tmp.mri_nu_correct.mni.17032/nu2.imp Processing:.................................................................Done Processing:.................................................................Done 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Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Processing:.................................................................Done Number of iterations: 23 CV of field change: 0.000988109 mri_binarize --i ./tmp.mri_nu_correct.mni.17032/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.17032/ones.mgz $Id: mri_binarize.c,v 1.43 2016/06/09 20:46:21 greve Exp $ cwd /home/bdl/freesurfer/subjects/SD06/mri cmdline mri_binarize.bin --i ./tmp.mri_nu_correct.mni.17032/nu2.mnc --min -1 --o ./tmp.mri_nu_correct.mni.17032/ones.mgz sysname Linux hostname HHS-SLH-F036878 machine x86_64 user bdl input ./tmp.mri_nu_correct.mni.17032/nu2.mnc frame 0 nErode3d 0 nErode2d 0 output ./tmp.mri_nu_correct.mni.17032/ones.mgz Binarizing based on threshold min -1 max +infinity binval 1 binvalnot 0 fstart = 0, fend = 0, nframes = 1 Found 16777216 values in range Counting number of voxels in first frame Found 16777216 voxels in final mask Count: 16777216 16777216.000000 16777216 100.000000 mri_binarize done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.17032/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.17032/sum.junk --avgwf ./tmp.mri_nu_correct.mni.17032/input.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.17032/ones.mgz --i orig.mgz --sum ./tmp.mri_nu_correct.mni.17032/sum.junk --avgwf ./tmp.mri_nu_correct.mni.17032/input.mean.dat sysname Linux hostname HHS-SLH-F036878 machine x86_64 user bdl UseRobust 0 Loading ./tmp.mri_nu_correct.mni.17032/ones.mgz Loading orig.mgz Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.17032/input.mean.dat mri_segstats done mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.17032/ones.mgz --i ./tmp.mri_nu_correct.mni.17032/nu2.mnc --sum ./tmp.mri_nu_correct.mni.17032/sum.junk --avgwf ./tmp.mri_nu_correct.mni.17032/output.mean.dat $Id: mri_segstats.c,v 1.121 2016/05/31 17:27:11 greve Exp $ cwd cmdline mri_segstats --id 1 --seg ./tmp.mri_nu_correct.mni.17032/ones.mgz --i ./tmp.mri_nu_correct.mni.17032/nu2.mnc --sum ./tmp.mri_nu_correct.mni.17032/sum.junk --avgwf ./tmp.mri_nu_correct.mni.17032/output.mean.dat sysname Linux hostname HHS-SLH-F036878 machine x86_64 user bdl UseRobust 0 Loading ./tmp.mri_nu_correct.mni.17032/ones.mgz Loading ./tmp.mri_nu_correct.mni.17032/nu2.mnc Voxel Volume is 1 mm^3 Generating list of segmentation ids Found 1 segmentations Computing statistics for each segmentation Reporting on 1 segmentations Using PrintSegStat Computing spatial average of each frame 0 Writing to ./tmp.mri_nu_correct.mni.17032/output.mean.dat mri_segstats done mris_calc -o ./tmp.mri_nu_correct.mni.17032/nu2.mnc ./tmp.mri_nu_correct.mni.17032/nu2.mnc mul 1.08513240936889499428 Saving result to './tmp.mri_nu_correct.mni.17032/nu2.mnc' (type = MINC ) [ ok ] mri_convert ./tmp.mri_nu_correct.mni.17032/nu2.mnc nu.mgz --like orig.mgz mri_convert.bin ./tmp.mri_nu_correct.mni.17032/nu2.mnc nu.mgz --like orig.mgz $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from ./tmp.mri_nu_correct.mni.17032/nu2.mnc... TR=0.00, TE=0.00, TI=0.00, flip angle=0.00 i_ras = (-1, 0, 0) j_ras = (0, 0, -1) k_ras = (0, 1, 0) INFO: transform src into the like-volume: orig.mgz writing to nu.mgz... mri_make_uchar nu.mgz transforms/talairach.xfm nu.mgz type change took 0 minutes and 4 seconds. mapping (21, 103) to ( 3, 110) Wed Feb 3 09:38:36 PST 2021 mri_nu_correct.mni done mri_add_xform_to_header -c /home/bdl/freesurfer/subjects/SD06/mri/transforms/talairach.xfm nu.mgz nu.mgz INFO: extension is mgz #-------------------------------------------- #@# Intensity Normalization Wed Feb 3 09:38:37 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_normalize -g 1 -mprage nu.mgz T1.mgz using max gradient = 1.000 assuming input volume is MGH (Van der Kouwe) MP-RAGE reading from nu.mgz... normalizing image... talairach transform 0.89104 0.01321 0.00302 2.30267; -0.01287 0.93729 -0.30175 -1.38687; -0.00725 0.28610 0.88901 0.56290; 0.00000 0.00000 0.00000 1.00000; processing without aseg, no1d=0 MRInormInit(): INFO: Modifying talairach volume c_(r,a,s) based on average_305 MRInormalize(): MRIsplineNormalize(): npeaks = 3 Starting OpenSpline(): npoints = 3 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 104 gm peak at 72 (72), valley at 24 (24) csf peak at 19, setting threshold to 54 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 110 gm peak at 88 (88), valley at 49 (49) csf peak at 36, setting threshold to 70 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to T1.mgz 3D bias adjustment took 1 minutes and 18 seconds. #-------------------------------------------- #@# Skull Stripping Wed Feb 3 09:39:55 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_em_register -rusage /home/bdl/freesurfer/subjects/SD06/touch/rusage.mri_em_register.skull.dat -skull nu.mgz /home/bdl/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta aligning to atlas containing skull, setting unknown_nbr_spacing = 5 == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach_with_skull.log reading '/home/bdl/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca'... average std = 22.9 using min determinant for regularization = 52.6 0 singular and 9002 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 8.7 or > 569.1 total sample mean = 77.6 (1399 zeros) ************************************************ spacing=8, using 3243 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 3243, passno 0, spacing 8 resetting wm mean[0]: 100 --> 108 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=8.0 skull bounding box = (47, 38, 16) --> (201, 217, 221) using (98, 98, 119) as brain centroid... mean wm in atlas = 108, using box (79,76,94) --> (116, 120,144) to find MRI wm before smoothing, mri peak at 87 robust fit to distribution - 85 +- 14.0 distribution too broad for accurate scaling - disabling after smoothing, mri peak at 108, scaling input intensities by 1.000 scaling channel 0 by 1 initial log_p = -4.654 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.512218 @ (9.091, -9.091, -9.091) max log p = -4.512218 @ (0.000, 0.000, 0.000) max log p = -4.506547 @ (-2.273, -6.818, 2.273) max log p = -4.471550 @ (3.409, 7.955, -3.409) max log p = -4.471550 @ (0.000, 0.000, 0.000) max log p = -4.465339 @ (-1.420, -0.284, 0.852) Found translation: (8.8, -8.2, -9.4): log p = -4.465 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.028, old_max_log_p =-4.465 (thresh=-4.5) 1.23625 0.00000 0.00000 -26.11436; 0.00000 1.14215 0.47309 -70.54433; 0.00000 -0.40708 0.98278 55.73794; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.020, old_max_log_p =-4.028 (thresh=-4.0) 1.22567 0.05313 -0.12828 -17.61951; 0.00000 1.22781 0.50857 -86.49822; 0.16136 -0.40360 0.97437 36.50195; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 2 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-4.020, old_max_log_p =-4.020 (thresh=-4.0) 1.22567 0.05313 -0.12828 -17.61951; 0.00000 1.22781 0.50857 -86.49822; 0.16136 -0.40360 0.97437 36.50195; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.955, old_max_log_p =-4.020 (thresh=-4.0) 1.23360 0.02662 -0.06428 -22.18180; 0.00000 1.18176 0.48950 -77.92300; 0.07928 -0.39831 0.96160 47.24423; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 4 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.955, old_max_log_p =-3.955 (thresh=-4.0) 1.23360 0.02662 -0.06428 -22.18180; 0.00000 1.18176 0.48950 -77.92300; 0.07928 -0.39831 0.96160 47.24423; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.932, old_max_log_p =-3.955 (thresh=-4.0) 1.23561 0.01365 -0.06046 -20.12795; 0.01005 1.18047 0.48858 -78.87335; 0.06915 -0.39820 0.96089 49.02438; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.926, old_max_log_p =-3.932 (thresh=-3.9) 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 7 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.926, old_max_log_p =-3.926 (thresh=-3.9) 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 3243 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; nsamples 3243 Quasinewton: input matrix 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 010: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.926 (old=-4.654) transform before final EM align: 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 364799 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; nsamples 364799 Quasinewton: input matrix 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 012: -log(p) = 4.3 tol 0.000000 final transform: 1.23561 0.01365 -0.06046 -20.12795; 0.01007 1.18324 0.48973 -79.39143; 0.06907 -0.39773 0.95976 49.09709; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach_with_skull.lta... mri_em_register utimesec 560.153034 mri_em_register stimesec 0.711975 mri_em_register ru_maxrss 614340 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 161763 mri_em_register ru_majflt 6 mri_em_register ru_nswap 0 mri_em_register ru_inblock 150296 mri_em_register ru_oublock 16 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 13 mri_em_register ru_nivcsw 1311 registration took 9 minutes and 21 seconds. mri_watershed -rusage /home/bdl/freesurfer/subjects/SD06/touch/rusage.mri_watershed.dat -T1 -brain_atlas /home/bdl/freesurfer/average/RB_all_withskull_2016-05-10.vc700.gca transforms/talairach_with_skull.lta T1.mgz brainmask.auto.mgz Mode: T1 normalized volume Mode: Use the information of atlas (default parms, --help for details) ********************************************************* The input file is T1.mgz The output file is brainmask.auto.mgz Weighting the input with atlas information before watershed *************************WATERSHED************************** Sorting... first estimation of the COG coord: x=125 y=120 z=102 r=77 first estimation of the main basin volume: 1958342 voxels Looking for seedpoints 2 found in the cerebellum 12 found in the rest of the brain global maximum in x=136, y=119, z=67, Imax=255 CSF=20, WM_intensity=110, WM_VARIANCE=5 WM_MIN=110, WM_HALF_MIN=110, WM_HALF_MAX=110, WM_MAX=110 preflooding height equal to 10 percent done. Analyze... main basin size=1519897087 voxels, voxel volume =1.000 = 1519897087 mmm3 = 1519897.088 cm3 done. PostAnalyze...Basin Prior 1831 basins merged thanks to atlas ***** 0 basin(s) merged in 1 iteration(s) ***** 0 voxel(s) added to the main basin done. Weighting the input with prior template ****************TEMPLATE DEFORMATION**************** second estimation of the COG coord: x=124,y=122, z=103, r=9362 iterations ^^^^^^^^ couldn't find WM with original limits - expanding ^^^^^^ GLOBAL CSF_MIN=2, CSF_intensity=23, CSF_MAX=60 , nb = 41895 RIGHT_CER CSF_MIN=7, CSF_intensity=22, CSF_MAX=51 , nb = -1035153496 LEFT_CER CSF_MIN=3, CSF_intensity=24, CSF_MAX=52 , nb = -1042864332 RIGHT_BRAIN CSF_MIN=5, CSF_intensity=23, CSF_MAX=68 , nb = -1070274903 LEFT_BRAIN CSF_MIN=0, CSF_intensity=23, CSF_MAX=53 , nb = 1076134110 OTHER CSF_MIN=6, CSF_intensity=32, CSF_MAX=47 , nb = 1075320180 Problem with the least square interpolation in GM_MIN calculation. CSF_MAX TRANSITION GM_MIN GM GLOBAL before analyzing : 60, 55, 51, 85 after analyzing : 46, 55, 55, 62 RIGHT_CER before analyzing : 51, 85, 88, 90 after analyzing : 51, 87, 88, 87 LEFT_CER before analyzing : 52, 59, 66, 92 after analyzing : 52, 63, 66, 70 RIGHT_BRAIN before analyzing : 68, 57, 51, 82 after analyzing : 48, 57, 57, 63 LEFT_BRAIN before analyzing : 53, 52, 51, 85 after analyzing : 44, 52, 52, 60 OTHER before analyzing : 47, 54, 68, 94 after analyzing : 47, 63, 68, 70 mri_strip_skull: done peeling brain highly tesselated surface with 10242 vertices matching...55 iterations *********************VALIDATION********************* curvature mean = -0.014, std = 0.012 curvature mean = 62.609, std = 8.242 No Rigid alignment: -atlas Mode Off (basic atlas / no registration) before rotation: sse = 4.81, sigma = 7.89 after rotation: sse = 4.81, sigma = 7.89 Localization of inacurate regions: Erosion-Dilation steps the sse mean is 6.46, its var is 13.87 before Erosion-Dilatation 3.64% of inacurate vertices after Erosion-Dilatation 2.65% of inacurate vertices Validation of the shape of the surface done. Scaling of atlas fields onto current surface fields ********FINAL ITERATIVE TEMPLATE DEFORMATION******** Compute Local values csf/gray Fine Segmentation...42 iterations mri_strip_skull: done peeling brain Brain Size = 1213616 voxels, voxel volume = 1.000 mm3 = 1213616 mmm3 = 1213.616 cm3 ****************************** Saving brainmask.auto.mgz done mri_watershed utimesec 10.023426 mri_watershed stimesec 0.139936 mri_watershed ru_maxrss 847572 mri_watershed ru_ixrss 0 mri_watershed ru_idrss 0 mri_watershed ru_isrss 0 mri_watershed ru_minflt 210148 mri_watershed ru_majflt 9 mri_watershed ru_nswap 0 mri_watershed ru_inblock 9680 mri_watershed ru_oublock 2120 mri_watershed ru_msgsnd 0 mri_watershed ru_msgrcv 0 mri_watershed ru_nsignals 0 mri_watershed ru_nvcsw 43 mri_watershed ru_nivcsw 30 mri_watershed done cp brainmask.auto.mgz brainmask.mgz #------------------------------------- #@# EM Registration Wed Feb 3 09:49:27 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_em_register -rusage /home/bdl/freesurfer/subjects/SD06/touch/rusage.mri_em_register.dat -uns 3 -mask brainmask.mgz nu.mgz /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta setting unknown_nbr_spacing = 3 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_em_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading '/home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca'... average std = 7.3 using min determinant for regularization = 5.3 0 singular and 841 ill-conditioned covariance matrices regularized reading 'nu.mgz'... freeing gibbs priors...done. accounting for voxel sizes in initial transform bounding unknown intensity as < 6.3 or > 503.7 total sample mean = 78.8 (1011 zeros) ************************************************ spacing=8, using 2830 sample points, tol=1.00e-05... ************************************************ register_mri: find_optimal_transform find_optimal_transform: nsamples 2830, passno 0, spacing 8 resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=29.0 skull bounding box = (60, 69, 42) --> (184, 190, 187) using (101, 109, 115) as brain centroid... mean wm in atlas = 107, using box (86,94,97) --> (116, 123,132) to find MRI wm before smoothing, mri peak at 91 robust fit to distribution - 89 +- 8.3 after smoothing, mri peak at 89, scaling input intensities by 1.202 scaling channel 0 by 1.20225 initial log_p = -4.346 ************************************************ First Search limited to translation only. ************************************************ max log p = -4.124609 @ (9.091, -9.091, -9.091) max log p = -4.112664 @ (-4.545, 4.545, 4.545) max log p = -4.076955 @ (-2.273, -6.818, -2.273) max log p = -4.051569 @ (-1.136, 1.136, -1.136) max log p = -4.034770 @ (0.568, 0.568, -0.568) max log p = -4.032798 @ (1.989, 0.284, 0.284) Found translation: (3.7, -9.4, -8.2): log p = -4.033 **************************************** Nine parameter search. iteration 0 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.719, old_max_log_p =-4.033 (thresh=-4.0) 1.14016 0.05744 -0.13868 -7.37497; 0.00000 1.14215 0.47309 -67.56446; 0.13885 -0.40360 0.97437 37.45382; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 1 nscales = 0 ... **************************************** Result so far: scale 1.000: max_log_p=-3.719, old_max_log_p =-3.719 (thresh=-3.7) 1.14016 0.05744 -0.13868 -7.37497; 0.00000 1.14215 0.47309 -67.56446; 0.13885 -0.40360 0.97437 37.45382; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.2500 **************************************** Nine parameter search. iteration 2 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.550, old_max_log_p =-3.719 (thresh=-3.7) 1.12528 0.03519 -0.07140 -9.71698; -0.00529 1.16415 0.47723 -73.67064; 0.06178 -0.39712 0.94248 49.73051; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 3 nscales = 1 ... **************************************** Result so far: scale 0.250: max_log_p=-3.548, old_max_log_p =-3.550 (thresh=-3.5) 1.12230 0.00839 -0.11724 -1.29301; 0.02887 1.15535 0.43424 -72.37562; 0.10020 -0.36417 0.97264 37.76985; 0.00000 0.00000 0.00000 1.00000; reducing scale to 0.0625 **************************************** Nine parameter search. iteration 4 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.506, old_max_log_p =-3.548 (thresh=-3.5) 1.12628 0.00842 -0.11736 -1.77682; 0.02722 1.15709 0.41675 -70.56593; 0.10036 -0.34527 0.97963 33.74751; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 5 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.494, old_max_log_p =-3.506 (thresh=-3.5) 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; **************************************** Nine parameter search. iteration 6 nscales = 2 ... **************************************** Result so far: scale 0.062: max_log_p=-3.494, old_max_log_p =-3.494 (thresh=-3.5) 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; min search scale 0.025000 reached *********************************************** Computing MAP estimate using 2830 samples... *********************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-05 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; nsamples 2830 Quasinewton: input matrix 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 009: -log(p) = -0.0 tol 0.000010 Resulting transform: 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; pass 1, spacing 8: log(p) = -3.494 (old=-4.346) transform before final EM align: 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; ************************************************** EM alignment process ... Computing final MAP estimate using 315557 samples. ************************************************** dt = 5.00e-06, momentum=0.80, tol=1.00e-07 l_intensity = 1.0000 Aligning input volume to GCA... Transform matrix 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; nsamples 315557 Quasinewton: input matrix 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; outof QuasiNewtonEMA: 011: -log(p) = 4.0 tol 0.000000 final transform: 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; writing output transformation to transforms/talairach.lta... mri_em_register utimesec 413.499160 mri_em_register stimesec 0.591981 mri_em_register ru_maxrss 603484 mri_em_register ru_ixrss 0 mri_em_register ru_idrss 0 mri_em_register ru_isrss 0 mri_em_register ru_minflt 162495 mri_em_register ru_majflt 0 mri_em_register ru_nswap 0 mri_em_register ru_inblock 140152 mri_em_register ru_oublock 16 mri_em_register ru_msgsnd 0 mri_em_register ru_msgrcv 0 mri_em_register ru_nsignals 0 mri_em_register ru_nvcsw 3 mri_em_register ru_nivcsw 854 registration took 6 minutes and 54 seconds. #-------------------------------------- #@# CA Normalize Wed Feb 3 09:56:21 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_ca_normalize -c ctrl_pts.mgz -mask brainmask.mgz nu.mgz /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.lta norm.mgz writing control point volume to ctrl_pts.mgz using MR volume brainmask.mgz to mask input volume... reading 1 input volume reading atlas from '/home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca'... reading transform from 'transforms/talairach.lta'... reading input volume from nu.mgz... resetting wm mean[0]: 98 --> 107 resetting gm mean[0]: 61 --> 61 input volume #1 is the most T1-like using real data threshold=29.0 skull bounding box = (60, 69, 42) --> (184, 190, 187) using (101, 109, 115) as brain centroid... mean wm in atlas = 107, using box (86,94,97) --> (116, 123,132) to find MRI wm before smoothing, mri peak at 91 robust fit to distribution - 89 +- 8.3 after smoothing, mri peak at 89, scaling input intensities by 1.202 scaling channel 0 by 1.20225 using 246344 sample points... INFO: compute sample coordinates transform 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20845; 0.00000 0.00000 0.00000 1.00000; INFO: transform used finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (117, 67, 33) --> (182, 173, 187) Left_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 2 of 21 (9.5%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (66, 67, 34) --> (127, 166, 188) Right_Cerebral_White_Matter: limiting intensities to 91.0 --> 132.0 0 of 7 (0.0%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (122, 148, 63) --> (166, 184, 114) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 8 of 13 (61.5%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (83, 148, 62) --> (122, 183, 116) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 2 of 7 (28.6%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (109, 132, 95) --> (139, 190, 125) Brain_Stem: limiting intensities to 88.0 --> 132.0 4 of 7 (57.1%) samples deleted using 55 total control points for intensity normalization... bias field = 0.965 +- 0.042 0 of 39 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (117, 67, 33) --> (182, 173, 187) Left_Cerebral_White_Matter: limiting intensities to 98.0 --> 132.0 43 of 96 (44.8%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (66, 67, 34) --> (127, 166, 188) Right_Cerebral_White_Matter: limiting intensities to 88.0 --> 132.0 6 of 126 (4.8%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (122, 148, 63) --> (166, 184, 114) Left_Cerebellum_White_Matter: limiting intensities to 97.0 --> 132.0 78 of 88 (88.6%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (83, 148, 62) --> (122, 183, 116) Right_Cerebellum_White_Matter: limiting intensities to 93.0 --> 132.0 74 of 83 (89.2%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (109, 132, 95) --> (139, 190, 125) Brain_Stem: limiting intensities to 88.0 --> 132.0 66 of 98 (67.3%) samples deleted using 491 total control points for intensity normalization... bias field = 1.005 +- 0.102 0 of 224 control points discarded finding control points in Left_Cerebral_White_Matter.... found 39915 control points for structure... bounding box (117, 67, 33) --> (182, 173, 187) Left_Cerebral_White_Matter: limiting intensities to 101.0 --> 132.0 149 of 250 (59.6%) samples deleted finding control points in Right_Cerebral_White_Matter.... found 39557 control points for structure... bounding box (66, 67, 34) --> (127, 166, 188) Right_Cerebral_White_Matter: limiting intensities to 97.0 --> 132.0 87 of 251 (34.7%) samples deleted finding control points in Left_Cerebellum_White_Matter.... found 3059 control points for structure... bounding box (122, 148, 63) --> (166, 184, 114) Left_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 70 of 97 (72.2%) samples deleted finding control points in Right_Cerebellum_White_Matter.... found 2705 control points for structure... bounding box (83, 148, 62) --> (122, 183, 116) Right_Cerebellum_White_Matter: limiting intensities to 88.0 --> 132.0 121 of 130 (93.1%) samples deleted finding control points in Brain_Stem.... found 3518 control points for structure... bounding box (109, 132, 95) --> (139, 190, 125) Brain_Stem: limiting intensities to 88.0 --> 132.0 118 of 170 (69.4%) samples deleted using 898 total control points for intensity normalization... bias field = 0.974 +- 0.066 2 of 347 control points discarded writing normalized volume to norm.mgz... writing control points to ctrl_pts.mgz freeing GCA...done. normalization took 0 minutes and 51 seconds. #-------------------------------------- #@# CA Reg Wed Feb 3 09:57:13 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_ca_register -rusage /home/bdl/freesurfer/subjects/SD06/touch/rusage.mri_ca_register.dat -nobigventricles -T transforms/talairach.lta -align-after -mask brainmask.mgz norm.mgz /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca transforms/talairach.m3z not handling expanded ventricles... using previously computed transform transforms/talairach.lta renormalizing sequences with structure alignment, equivalent to: -renormalize -regularize_mean 0.500 -regularize 0.500 using MR volume brainmask.mgz to mask input volume... == Number of threads available to mri_ca_register for OpenMP = 1 == reading 1 input volumes... logging results to talairach.log reading input volume 'norm.mgz'... reading GCA '/home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca'... label assignment complete, 0 changed (0.00%) det(m_affine) = 1.45 (predicted orig area = 5.5) label assignment complete, 0 changed (0.00%) freeing gibbs priors...done. average std[0] = 5.0 **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.039 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=1.026, neg=0, invalid=762 0001: dt=270.982424, rms=0.993 (3.198%), neg=0, invalid=762 0002: dt=221.952000, rms=0.976 (1.726%), neg=0, invalid=762 0003: dt=129.472000, rms=0.969 (0.710%), neg=0, invalid=762 0004: dt=887.808000, rms=0.949 (2.059%), neg=0, invalid=762 0005: dt=369.920000, rms=0.943 (0.692%), neg=0, invalid=762 0006: dt=92.480000, rms=0.942 (0.106%), neg=0, invalid=762 0007: dt=92.480000, rms=0.941 (0.069%), neg=0, invalid=762 0008: dt=92.480000, rms=0.940 (0.120%), neg=0, invalid=762 0009: dt=92.480000, rms=0.938 (0.204%), neg=0, invalid=762 0010: dt=92.480000, rms=0.936 (0.260%), neg=0, invalid=762 0011: dt=92.480000, rms=0.934 (0.137%), neg=0, invalid=762 0012: dt=92.480000, rms=0.932 (0.296%), neg=0, invalid=762 0013: dt=92.480000, rms=0.929 (0.262%), neg=0, invalid=762 0014: dt=92.480000, rms=0.927 (0.212%), neg=0, invalid=762 0015: dt=92.480000, rms=0.927 (0.051%), neg=0, invalid=762 0016: dt=92.480000, rms=0.926 (0.021%), neg=0, invalid=762 0017: dt=443.904000, rms=0.924 (0.304%), neg=0, invalid=762 0018: dt=129.472000, rms=0.923 (0.086%), neg=0, invalid=762 0019: dt=129.472000, rms=0.922 (0.089%), neg=0, invalid=762 0020: dt=129.472000, rms=0.921 (0.158%), neg=0, invalid=762 0021: dt=129.472000, rms=0.919 (0.145%), neg=0, invalid=762 0022: dt=129.472000, rms=0.918 (0.154%), neg=0, invalid=762 0023: dt=129.472000, rms=0.917 (0.053%), neg=0, invalid=762 0024: dt=129.472000, rms=0.917 (0.085%), neg=0, invalid=762 0025: dt=129.472000, rms=0.916 (0.092%), neg=0, invalid=762 0026: dt=129.472000, rms=0.914 (0.155%), neg=0, invalid=762 0027: dt=129.472000, rms=0.913 (0.157%), neg=0, invalid=762 0028: dt=129.472000, rms=0.913 (0.010%), neg=0, invalid=762 0029: dt=16.184000, rms=0.913 (0.002%), neg=0, invalid=762 0030: dt=2.023000, rms=0.913 (0.002%), neg=0, invalid=762 0031: dt=1.011500, rms=0.913 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.913, neg=0, invalid=762 0032: dt=2.023000, rms=0.913 (0.078%), neg=0, invalid=762 0033: dt=0.054187, rms=0.913 (-0.001%), neg=0, invalid=762 setting smoothness coefficient to 0.154 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.922, neg=0, invalid=762 0034: dt=145.152000, rms=0.907 (1.631%), neg=0, invalid=762 0035: dt=36.288000, rms=0.901 (0.659%), neg=0, invalid=762 0036: dt=36.288000, rms=0.898 (0.349%), neg=0, invalid=762 0037: dt=103.680000, rms=0.890 (0.842%), neg=0, invalid=762 0038: dt=25.920000, rms=0.889 (0.175%), neg=0, invalid=762 0039: dt=0.810000, rms=0.888 (0.003%), neg=0, invalid=762 0040: dt=0.202500, rms=0.888 (0.002%), neg=0, invalid=762 0041: dt=0.050625, rms=0.888 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.889, neg=0, invalid=762 0042: dt=1.620000, rms=0.888 (0.079%), neg=0, invalid=762 0043: dt=0.567000, rms=0.888 (0.004%), neg=0, invalid=762 0044: dt=0.567000, rms=0.888 (-0.002%), neg=0, invalid=762 setting smoothness coefficient to 0.588 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.921, neg=0, invalid=762 0045: dt=11.200000, rms=0.912 (1.018%), neg=0, invalid=762 0046: dt=9.600000, rms=0.906 (0.683%), neg=0, invalid=762 0047: dt=9.600000, rms=0.900 (0.648%), neg=0, invalid=762 0048: dt=11.200000, rms=0.896 (0.378%), neg=0, invalid=762 0049: dt=11.200000, rms=0.891 (0.656%), neg=0, invalid=762 0050: dt=11.200000, rms=0.888 (0.254%), neg=0, invalid=762 0051: dt=11.200000, rms=0.884 (0.483%), neg=0, invalid=762 0052: dt=11.200000, rms=0.881 (0.280%), neg=0, invalid=762 0053: dt=11.200000, rms=0.878 (0.376%), neg=0, invalid=762 0054: dt=11.200000, rms=0.876 (0.231%), neg=0, invalid=762 0055: dt=11.200000, rms=0.874 (0.243%), neg=0, invalid=762 0056: dt=11.200000, rms=0.871 (0.363%), neg=0, invalid=762 0057: dt=11.200000, rms=0.867 (0.441%), neg=0, invalid=762 0058: dt=11.200000, rms=0.863 (0.475%), neg=0, invalid=762 0059: dt=11.200000, rms=0.863 (0.032%), neg=0, invalid=762 0060: dt=11.200000, rms=0.862 (0.076%), neg=0, invalid=762 0061: dt=11.200000, rms=0.860 (0.193%), neg=0, invalid=762 0062: dt=11.200000, rms=0.858 (0.244%), neg=0, invalid=762 0063: dt=11.200000, rms=0.856 (0.236%), neg=0, invalid=762 0064: dt=11.200000, rms=0.855 (0.164%), neg=0, invalid=762 0065: dt=11.200000, rms=0.852 (0.292%), neg=0, invalid=762 0066: dt=11.200000, rms=0.850 (0.320%), neg=0, invalid=762 0067: dt=11.200000, rms=0.847 (0.355%), neg=0, invalid=762 0068: dt=11.200000, rms=0.847 (-0.040%), neg=0, invalid=762 0069: dt=0.000000, rms=0.847 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.847, neg=0, invalid=762 0070: dt=0.000000, rms=0.847 (0.094%), neg=0, invalid=762 0071: dt=0.000000, rms=0.847 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.914, neg=0, invalid=762 0072: dt=0.000000, rms=0.913 (0.081%), neg=0, invalid=762 0073: dt=0.000000, rms=0.913 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.914, neg=0, invalid=762 0074: dt=0.000000, rms=0.913 (0.081%), neg=0, invalid=762 0075: dt=0.000000, rms=0.913 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 5.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=1.042, neg=0, invalid=762 0076: dt=1.183824, rms=1.025 (1.611%), neg=0, invalid=762 0077: dt=1.536000, rms=1.015 (0.947%), neg=0, invalid=762 0078: dt=1.536000, rms=1.007 (0.772%), neg=0, invalid=762 0079: dt=1.792000, rms=1.003 (0.464%), neg=0, invalid=762 0080: dt=1.792000, rms=0.997 (0.570%), neg=0, invalid=762 0081: dt=1.024000, rms=0.994 (0.292%), neg=0, invalid=762 0082: dt=1.792000, rms=0.991 (0.342%), neg=0, invalid=762 0083: dt=1.024000, rms=0.988 (0.212%), neg=0, invalid=762 0084: dt=1.024000, rms=0.986 (0.210%), neg=0, invalid=762 0085: dt=1.024000, rms=0.983 (0.335%), neg=0, invalid=762 0086: dt=1.024000, rms=0.979 (0.424%), neg=0, invalid=762 0087: dt=1.024000, rms=0.975 (0.386%), neg=0, invalid=762 0088: dt=1.024000, rms=0.970 (0.500%), neg=0, invalid=762 0089: dt=1.024000, rms=0.965 (0.536%), neg=0, invalid=762 0090: dt=1.024000, rms=0.961 (0.375%), neg=0, invalid=762 0091: dt=1.024000, rms=0.959 (0.221%), neg=0, invalid=762 0092: dt=1.024000, rms=0.958 (0.164%), neg=0, invalid=762 0093: dt=1.024000, rms=0.957 (0.118%), neg=0, invalid=762 0094: dt=1.024000, rms=0.955 (0.151%), neg=0, invalid=762 0095: dt=1.024000, rms=0.954 (0.075%), neg=0, invalid=762 0096: dt=1.024000, rms=0.954 (0.062%), neg=0, invalid=762 0097: dt=1.280000, rms=0.953 (0.070%), neg=0, invalid=762 0098: dt=1.792000, rms=0.952 (0.101%), neg=0, invalid=762 0099: dt=1.024000, rms=0.951 (0.090%), neg=0, invalid=762 0100: dt=1.024000, rms=0.951 (0.081%), neg=0, invalid=762 0101: dt=1.024000, rms=0.950 (0.107%), neg=0, invalid=762 0102: dt=1.024000, rms=0.948 (0.145%), neg=0, invalid=762 0103: dt=1.024000, rms=0.947 (0.157%), neg=0, invalid=762 0104: dt=1.024000, rms=0.945 (0.165%), neg=0, invalid=762 0105: dt=1.024000, rms=0.944 (0.089%), neg=0, invalid=762 0106: dt=1.024000, rms=0.943 (0.096%), neg=0, invalid=762 0107: dt=1.024000, rms=0.942 (0.095%), neg=0, invalid=762 0108: dt=0.112000, rms=0.942 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.943, neg=0, invalid=762 0109: dt=0.448000, rms=0.942 (0.079%), neg=0, invalid=762 0110: dt=1.024000, rms=0.942 (0.030%), neg=0, invalid=762 0111: dt=1.024000, rms=0.941 (0.067%), neg=0, invalid=762 0112: dt=1.024000, rms=0.940 (0.113%), neg=0, invalid=762 0113: dt=1.024000, rms=0.939 (0.123%), neg=0, invalid=762 0114: dt=1.024000, rms=0.938 (0.098%), neg=0, invalid=762 0115: dt=1.024000, rms=0.938 (0.016%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 10.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.929, neg=0, invalid=762 0116: dt=1.359307, rms=0.875 (5.793%), neg=0, invalid=762 0117: dt=0.112000, rms=0.873 (0.263%), neg=0, invalid=762 0118: dt=0.028000, rms=0.873 (0.009%), neg=0, invalid=762 0119: dt=0.028000, rms=0.873 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.873, neg=0, invalid=762 0120: dt=0.096000, rms=0.872 (0.154%), neg=0, invalid=762 0121: dt=-0.000057, rms=0.872 (0.002%), neg=0, invalid=762 0122: dt=-0.000057, rms=0.872 (-0.000%), neg=0, invalid=762 renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.10027 (20) mri peak = 0.12356 (50) Left_Lateral_Ventricle (4): linear fit = 2.60 x + 0.0 (483 voxels, overlap=0.006) Left_Lateral_Ventricle (4): linear fit = 1.50 x + 0.0 (483 voxels, peak = 52), gca=30.0 gca peak = 0.15565 (16) mri peak = 0.13415 (46) Right_Lateral_Ventricle (43): linear fit = 2.84 x + 0.0 (546 voxels, overlap=0.005) Right_Lateral_Ventricle (43): linear fit = 1.50 x + 0.0 (546 voxels, peak = 45), gca=24.0 gca peak = 0.26829 (96) mri peak = 0.06682 (113) Right_Pallidum (52): linear fit = 1.17 x + 0.0 (442 voxels, overlap=0.036) Right_Pallidum (52): linear fit = 1.17 x + 0.0 (442 voxels, peak = 113), gca=112.8 gca peak = 0.20183 (93) mri peak = 0.10129 (101) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (460 voxels, overlap=0.611) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (460 voxels, peak = 104), gca=103.7 gca peak = 0.21683 (55) mri peak = 0.10376 (78) Right_Hippocampus (53): linear fit = 1.38 x + 0.0 (285 voxels, overlap=0.022) Right_Hippocampus (53): linear fit = 1.38 x + 0.0 (285 voxels, peak = 76), gca=75.6 gca peak = 0.30730 (58) mri peak = 0.08156 (70) Left_Hippocampus (17): linear fit = 1.22 x + 0.0 (302 voxels, overlap=0.023) Left_Hippocampus (17): linear fit = 1.22 x + 0.0 (302 voxels, peak = 70), gca=70.5 gca peak = 0.11430 (101) mri peak = 0.05669 (104) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (36905 voxels, overlap=0.842) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (36905 voxels, peak = 107), gca=106.6 gca peak = 0.12076 (102) mri peak = 0.05705 (104) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (42643 voxels, overlap=0.943) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (42643 voxels, peak = 105), gca=104.5 gca peak = 0.14995 (59) mri peak = 0.03884 (79) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (14741 voxels, overlap=0.001) Left_Cerebral_Cortex (3): linear fit = 1.35 x + 0.0 (14741 voxels, peak = 79), gca=79.4 gca peak = 0.15082 (58) mri peak = 0.04173 (75) Right_Cerebral_Cortex (42): linear fit = 1.33 x + 0.0 (12746 voxels, overlap=0.000) Right_Cerebral_Cortex (42): linear fit = 1.33 x + 0.0 (12746 voxels, peak = 77), gca=76.9 gca peak = 0.14161 (67) mri peak = 0.08175 (95) Right_Caudate (50): linear fit = 1.42 x + 0.0 (274 voxels, overlap=0.013) Right_Caudate (50): linear fit = 1.42 x + 0.0 (274 voxels, peak = 95), gca=95.5 gca peak = 0.15243 (71) mri peak = 0.13744 (99) Left_Caudate (11): linear fit = 1.29 x + 0.0 (487 voxels, overlap=0.016) Left_Caudate (11): linear fit = 1.29 x + 0.0 (487 voxels, peak = 92), gca=91.9 gca peak = 0.13336 (57) mri peak = 0.05421 (74) Left_Cerebellum_Cortex (8): linear fit = 1.38 x + 0.0 (9565 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.38 x + 0.0 (9565 voxels, peak = 78), gca=78.4 gca peak = 0.13252 (56) mri peak = 0.04909 (70) Right_Cerebellum_Cortex (47): linear fit = 1.27 x + 0.0 (11285 voxels, overlap=0.002) Right_Cerebellum_Cortex (47): linear fit = 1.27 x + 0.0 (11285 voxels, peak = 71), gca=71.4 gca peak = 0.18181 (84) mri peak = 0.06991 (77) Left_Cerebellum_White_Matter (7): linear fit = 0.95 x + 0.0 (6045 voxels, overlap=0.989) Left_Cerebellum_White_Matter (7): linear fit = 0.95 x + 0.0 (6045 voxels, peak = 80), gca=80.2 gca peak = 0.20573 (83) mri peak = 0.08233 (77) Right_Cerebellum_White_Matter (46): linear fit = 0.94 x + 0.0 (5821 voxels, overlap=0.987) Right_Cerebellum_White_Matter (46): linear fit = 0.94 x + 0.0 (5821 voxels, peak = 78), gca=77.6 gca peak = 0.21969 (57) mri peak = 0.09439 (72) Left_Amygdala (18): linear fit = 1.25 x + 0.0 (299 voxels, overlap=0.037) Left_Amygdala (18): linear fit = 1.25 x + 0.0 (299 voxels, peak = 71), gca=71.0 gca peak = 0.39313 (56) mri peak = 0.09570 (77) Right_Amygdala (54): linear fit = 1.37 x + 0.0 (203 voxels, overlap=0.039) Right_Amygdala (54): linear fit = 1.37 x + 0.0 (203 voxels, peak = 76), gca=76.4 gca peak = 0.14181 (85) mri peak = 0.06435 (107) Left_Thalamus_Proper (10): linear fit = 1.21 x + 0.0 (2521 voxels, overlap=0.010) Left_Thalamus_Proper (10): linear fit = 1.21 x + 0.0 (2521 voxels, peak = 102), gca=102.4 gca peak = 0.11978 (83) mri peak = 0.07066 (102) Right_Thalamus_Proper (49): linear fit = 1.22 x + 0.0 (1778 voxels, overlap=0.009) Right_Thalamus_Proper (49): linear fit = 1.22 x + 0.0 (1778 voxels, peak = 101), gca=100.8 gca peak = 0.13399 (79) mri peak = 0.07182 (100) Left_Putamen (12): linear fit = 1.25 x + 0.0 (1184 voxels, overlap=0.014) Left_Putamen (12): linear fit = 1.25 x + 0.0 (1184 voxels, peak = 99), gca=99.1 gca peak = 0.14159 (79) mri peak = 0.09309 (105) Right_Putamen (51): linear fit = 1.30 x + 0.0 (1064 voxels, overlap=0.015) Right_Putamen (51): linear fit = 1.30 x + 0.0 (1064 voxels, peak = 103), gca=103.1 gca peak = 0.10025 (80) mri peak = 0.09372 (85) Brain_Stem (16): linear fit = 1.10 x + 0.0 (7875 voxels, overlap=0.402) Brain_Stem (16): linear fit = 1.10 x + 0.0 (7875 voxels, peak = 88), gca=87.6 gca peak = 0.13281 (86) mri peak = 0.10000 (98) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (704 voxels, overlap=0.311) Right_VentralDC (60): linear fit = 1.12 x + 0.0 (704 voxels, peak = 97), gca=96.8 gca peak = 0.12801 (89) mri peak = 0.08782 (100) Left_VentralDC (28): linear fit = 1.14 x + 0.0 (842 voxels, overlap=0.204) Left_VentralDC (28): linear fit = 1.14 x + 0.0 (842 voxels, peak = 102), gca=101.9 gca peak = 0.20494 (23) uniform distribution in MR - rejecting arbitrary fit gca peak = 0.15061 (21) mri peak = 0.11983 (33) Fourth_Ventricle (15): linear fit = 1.87 x + 0.0 (262 voxels, overlap=0.064) Fourth_Ventricle (15): linear fit = 1.87 x + 0.0 (262 voxels, peak = 39), gca=39.2 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.18056 (32) gca peak Left_Thalamus = 0.64095 (94) gca peak Third_Ventricle = 0.20494 (23) gca peak Fourth_Ventricle = 0.15061 (21) gca peak CSF = 0.20999 (34) gca peak Left_Accumbens_area = 0.39030 (62) gca peak Left_undetermined = 0.95280 (25) gca peak Left_vessel = 0.67734 (53) gca peak Left_choroid_plexus = 0.09433 (44) gca peak Right_Inf_Lat_Vent = 0.23544 (26) gca peak Right_Accumbens_area = 0.30312 (64) gca peak Right_vessel = 0.46315 (51) gca peak Right_choroid_plexus = 0.14086 (44) gca peak Fifth_Ventricle = 0.51669 (36) gca peak WM_hypointensities = 0.09722 (76) gca peak non_WM_hypointensities = 0.11899 (47) gca peak Optic_Chiasm = 0.39033 (72) label assignment complete, 0 changed (0.00%) not using caudate to estimate GM means estimating mean gm scale to be 1.31 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 1.50 x + 0.0 Left_Putamen too bright - rescaling by 0.958 (from 1.255) to 95.0 (was 99.1) Left_Pallidum too bright - rescaling by 0.987 (from 1.115) to 102.4 (was 103.7) Right_Putamen too bright - rescaling by 0.921 (from 1.305) to 95.0 (was 103.1) Right_Pallidum too bright - rescaling by 0.908 (from 1.175) to 102.4 (was 112.8) saving intensity scales to talairach.label_intensities.txt **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.850, neg=0, invalid=762 0123: dt=27.744000, rms=0.841 (1.105%), neg=0, invalid=762 0124: dt=3.468000, rms=0.841 (0.005%), neg=0, invalid=762 0125: dt=3.468000, rms=0.841 (-0.003%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.841, neg=0, invalid=762 0126: dt=0.361250, rms=0.841 (0.046%), neg=0, invalid=762 0127: dt=0.126438, rms=0.841 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.841, neg=0, invalid=762 0128: dt=45.583333, rms=0.827 (1.687%), neg=0, invalid=762 0129: dt=62.208000, rms=0.821 (0.714%), neg=0, invalid=762 0130: dt=36.288000, rms=0.819 (0.239%), neg=0, invalid=762 0131: dt=36.288000, rms=0.817 (0.273%), neg=0, invalid=762 0132: dt=9.072000, rms=0.816 (0.058%), neg=0, invalid=762 0133: dt=2.268000, rms=0.816 (0.013%), neg=0, invalid=762 0134: dt=0.567000, rms=0.816 (0.004%), neg=0, invalid=762 0135: dt=0.070875, rms=0.816 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.817, neg=0, invalid=762 0136: dt=93.601713, rms=0.802 (1.767%), neg=0, invalid=762 0137: dt=331.776000, rms=0.791 (1.353%), neg=0, invalid=762 0138: dt=93.841642, rms=0.784 (0.928%), neg=0, invalid=762 0139: dt=9.072000, rms=0.783 (0.090%), neg=0, invalid=762 0140: dt=9.072000, rms=0.783 (0.082%), neg=0, invalid=762 0141: dt=9.072000, rms=0.782 (0.078%), neg=0, invalid=762 0142: dt=0.030375, rms=0.782 (0.000%), neg=0, invalid=762 0143: dt=0.000237, rms=0.782 (0.000%), neg=0, invalid=762 0144: dt=0.000059, rms=0.782 (0.000%), neg=0, invalid=762 0145: dt=0.000015, rms=0.782 (0.000%), neg=0, invalid=762 0146: dt=0.000000, rms=0.782 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.785, neg=0, invalid=762 0147: dt=0.000000, rms=0.784 (0.086%), neg=0, invalid=762 0148: dt=0.000000, rms=0.784 (0.000%), neg=0, invalid=762 0149: dt=0.000000, rms=0.784 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.785, neg=0, invalid=762 0150: dt=0.000000, rms=0.784 (0.086%), neg=0, invalid=762 0151: dt=0.000000, rms=0.784 (0.000%), neg=0, invalid=762 0152: dt=0.000000, rms=0.784 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.792, neg=0, invalid=762 0153: dt=0.000000, rms=0.791 (0.084%), neg=0, invalid=762 0154: dt=0.000000, rms=0.791 (0.000%), neg=0, invalid=762 0155: dt=0.000000, rms=0.791 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.792, neg=0, invalid=762 0156: dt=0.000000, rms=0.791 (0.084%), neg=0, invalid=762 0157: dt=0.000000, rms=0.791 (0.000%), neg=0, invalid=762 0158: dt=0.000000, rms=0.791 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.806, neg=0, invalid=762 0159: dt=1.792000, rms=0.780 (3.214%), neg=0, invalid=762 0160: dt=1.792000, rms=0.764 (2.064%), neg=0, invalid=762 0161: dt=5.120000, rms=0.737 (3.561%), neg=0, invalid=762 0162: dt=0.000000, rms=0.737 (-0.008%), neg=0, invalid=762 0163: dt=0.100000, rms=0.737 (-0.005%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.738, neg=0, invalid=762 0164: dt=3.073529, rms=0.731 (0.966%), neg=0, invalid=762 0165: dt=5.120000, rms=0.714 (2.329%), neg=0, invalid=762 0166: dt=1.792000, rms=0.712 (0.256%), neg=0, invalid=762 0167: dt=1.792000, rms=0.709 (0.335%), neg=0, invalid=762 0168: dt=7.168000, rms=0.702 (1.065%), neg=0, invalid=762 0169: dt=1.837838, rms=0.700 (0.243%), neg=0, invalid=762 0170: dt=1.792000, rms=0.699 (0.116%), neg=0, invalid=762 0171: dt=5.120000, rms=0.697 (0.369%), neg=0, invalid=762 0172: dt=1.792000, rms=0.696 (0.117%), neg=0, invalid=762 0173: dt=1.792000, rms=0.695 (0.124%), neg=0, invalid=762 0174: dt=1.792000, rms=0.695 (0.064%), neg=0, invalid=762 0175: dt=5.120000, rms=0.693 (0.278%), neg=0, invalid=762 0176: dt=1.024000, rms=0.692 (0.036%), neg=0, invalid=762 0177: dt=1.024000, rms=0.692 (0.027%), neg=0, invalid=762 0178: dt=1.024000, rms=0.692 (0.045%), neg=0, invalid=762 0179: dt=1.024000, rms=0.691 (0.090%), neg=0, invalid=762 0180: dt=1.024000, rms=0.690 (0.129%), neg=0, invalid=762 0181: dt=1.024000, rms=0.689 (0.129%), neg=0, invalid=762 0182: dt=1.024000, rms=0.689 (0.117%), neg=0, invalid=762 0183: dt=1.024000, rms=0.688 (0.097%), neg=0, invalid=762 0184: dt=1.024000, rms=0.687 (0.077%), neg=0, invalid=762 0185: dt=1.024000, rms=0.687 (0.069%), neg=0, invalid=762 0186: dt=1.024000, rms=0.687 (0.063%), neg=0, invalid=762 0187: dt=1.024000, rms=0.686 (0.039%), neg=0, invalid=762 0188: dt=1.024000, rms=0.686 (0.035%), neg=0, invalid=762 0189: dt=1.024000, rms=0.686 (0.014%), neg=0, invalid=762 0190: dt=1.024000, rms=0.686 (0.024%), neg=0, invalid=762 0191: dt=1.024000, rms=0.686 (0.027%), neg=0, invalid=762 0192: dt=1.024000, rms=0.685 (0.037%), neg=0, invalid=762 0193: dt=1.024000, rms=0.685 (0.024%), neg=0, invalid=762 0194: dt=1.024000, rms=0.685 (0.026%), neg=0, invalid=762 0195: dt=1.024000, rms=0.685 (0.017%), neg=0, invalid=762 0196: dt=1.024000, rms=0.685 (0.029%), neg=0, invalid=762 0197: dt=1.024000, rms=0.684 (0.032%), neg=0, invalid=762 0198: dt=1.024000, rms=0.684 (0.037%), neg=0, invalid=762 0199: dt=1.024000, rms=0.684 (0.036%), neg=0, invalid=762 0200: dt=1.024000, rms=0.684 (0.030%), neg=0, invalid=762 0201: dt=1.024000, rms=0.684 (0.020%), neg=0, invalid=762 0202: dt=1.024000, rms=0.683 (0.026%), neg=0, invalid=762 0203: dt=1.024000, rms=0.683 (0.019%), neg=0, invalid=762 0204: dt=1.024000, rms=0.683 (0.024%), neg=0, invalid=762 0205: dt=1.024000, rms=0.683 (0.026%), neg=0, invalid=762 0206: dt=1.024000, rms=0.683 (0.027%), neg=0, invalid=762 0207: dt=1.024000, rms=0.683 (0.025%), neg=0, invalid=762 0208: dt=1.024000, rms=0.683 (0.014%), neg=0, invalid=762 0209: dt=1.024000, rms=0.682 (0.014%), neg=0, invalid=762 0210: dt=0.448000, rms=0.682 (-0.003%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.671, neg=0, invalid=762 0211: dt=0.448000, rms=0.645 (4.011%), neg=0, invalid=762 0212: dt=0.448000, rms=0.637 (1.128%), neg=0, invalid=762 0213: dt=0.448000, rms=0.634 (0.440%), neg=0, invalid=762 0214: dt=0.448000, rms=0.633 (0.163%), neg=0, invalid=762 0215: dt=0.448000, rms=0.633 (0.136%), neg=0, invalid=762 0216: dt=0.448000, rms=0.632 (0.033%), neg=0, invalid=762 0217: dt=0.448000, rms=0.632 (0.068%), neg=0, invalid=762 0218: dt=0.448000, rms=0.632 (0.040%), neg=0, invalid=762 0219: dt=0.448000, rms=0.632 (-0.042%), neg=0, invalid=762 0220: dt=0.028000, rms=0.632 (0.000%), neg=0, invalid=762 0221: dt=0.064000, rms=0.632 (0.001%), neg=0, invalid=762 0222: dt=0.320000, rms=0.632 (0.006%), neg=0, invalid=762 0223: dt=0.000000, rms=0.632 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.633, neg=0, invalid=762 0224: dt=0.320000, rms=0.621 (1.894%), neg=0, invalid=762 0225: dt=0.384000, rms=0.615 (0.973%), neg=0, invalid=762 0226: dt=0.384000, rms=0.612 (0.473%), neg=0, invalid=762 0227: dt=0.384000, rms=0.610 (0.234%), neg=0, invalid=762 0228: dt=0.448000, rms=0.609 (0.208%), neg=0, invalid=762 0229: dt=0.448000, rms=0.609 (0.066%), neg=0, invalid=762 0230: dt=0.448000, rms=0.608 (0.090%), neg=0, invalid=762 0231: dt=0.256000, rms=0.608 (0.017%), neg=0, invalid=762 0232: dt=0.256000, rms=0.608 (0.048%), neg=0, invalid=762 0233: dt=0.256000, rms=0.607 (0.039%), neg=0, invalid=762 0234: dt=0.256000, rms=0.607 (0.006%), neg=0, invalid=762 0235: dt=0.256000, rms=0.607 (0.030%), neg=0, invalid=762 0236: dt=0.256000, rms=0.607 (0.057%), neg=0, invalid=762 0237: dt=0.256000, rms=0.607 (0.031%), neg=0, invalid=762 0238: dt=0.256000, rms=0.607 (0.016%), neg=0, invalid=762 0239: dt=0.256000, rms=0.606 (0.017%), neg=0, invalid=762 0240: dt=0.256000, rms=0.606 (0.026%), neg=0, invalid=762 0241: dt=0.256000, rms=0.606 (0.019%), neg=0, invalid=762 0242: dt=0.256000, rms=0.606 (0.017%), neg=0, invalid=762 0243: dt=0.320000, rms=0.606 (0.021%), neg=0, invalid=762 0244: dt=0.000000, rms=0.606 (0.001%), neg=0, invalid=762 0245: dt=0.050000, rms=0.606 (-0.001%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) ********************* ALLOWING NEGATIVE NODES IN DEFORMATION******************************** **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 0246: dt=0.000000, rms=0.603 (0.181%), neg=0, invalid=762 0247: dt=0.000000, rms=0.603 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 0248: dt=0.000000, rms=0.603 (0.181%), neg=0, invalid=762 0249: dt=0.000000, rms=0.603 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 0250: dt=0.000000, rms=0.603 (0.181%), neg=0, invalid=762 0251: dt=0.000000, rms=0.603 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 0252: dt=6.480000, rms=0.603 (0.190%), neg=0, invalid=762 0253: dt=2.268000, rms=0.603 (-0.006%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 0254: dt=2.400000, rms=0.603 (0.254%), neg=0, invalid=762 0255: dt=0.150000, rms=0.603 (0.005%), neg=0, invalid=762 0256: dt=0.150000, rms=0.603 (-0.002%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.604, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0257: dt=19.083333, rms=0.599 (0.727%), neg=0, invalid=762 0258: dt=5.988701, rms=0.598 (0.271%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0259: dt=25.600000, rms=0.596 (0.251%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0260: dt=11.200000, rms=0.595 (0.127%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0261: dt=11.200000, rms=0.595 (0.012%), neg=0, invalid=762 0262: dt=11.200000, rms=0.594 (0.184%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 7 iterations, nbhd size=1, neg = 0 0263: dt=11.200000, rms=0.593 (0.202%), neg=0, invalid=762 iter 0, gcam->neg = 3 after 7 iterations, nbhd size=1, neg = 0 0264: dt=11.200000, rms=0.592 (0.110%), neg=0, invalid=762 iter 0, gcam->neg = 7 after 1 iterations, nbhd size=0, neg = 0 0265: dt=11.200000, rms=0.592 (0.086%), neg=0, invalid=762 0266: dt=11.200000, rms=0.591 (0.132%), neg=0, invalid=762 0267: dt=2.800000, rms=0.591 (0.008%), neg=0, invalid=762 0268: dt=2.800000, rms=0.591 (0.011%), neg=0, invalid=762 0269: dt=2.800000, rms=0.591 (0.007%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 7 iterations, nbhd size=1, neg = 0 0270: dt=2.800000, rms=0.591 (0.034%), neg=0, invalid=762 0271: dt=2.800000, rms=0.590 (0.044%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0272: dt=2.800000, rms=0.590 (0.031%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.595, neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0273: dt=1.008000, rms=0.593 (0.203%), neg=0, invalid=762 0274: dt=0.000000, rms=0.593 (0.004%), neg=0, invalid=762 0275: dt=0.150000, rms=0.593 (-0.001%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.594, neg=0, invalid=762 iter 0, gcam->neg = 4 after 2 iterations, nbhd size=0, neg = 0 0276: dt=15.012658, rms=0.585 (1.602%), neg=0, invalid=762 0277: dt=3.735683, rms=0.582 (0.508%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0278: dt=14.062780, rms=0.579 (0.499%), neg=0, invalid=762 0279: dt=3.523810, rms=0.578 (0.254%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0280: dt=9.761468, rms=0.576 (0.220%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 0 iterations, nbhd size=0, neg = 0 0281: dt=9.761468, rms=0.576 (-0.369%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.584, neg=0, invalid=762 0282: dt=0.000000, rms=0.583 (0.174%), neg=0, invalid=762 0283: dt=0.000000, rms=0.583 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.584, neg=0, invalid=762 0284: dt=0.448000, rms=0.582 (0.216%), neg=0, invalid=762 0285: dt=0.448000, rms=0.582 (0.019%), neg=0, invalid=762 0286: dt=0.448000, rms=0.582 (0.009%), neg=0, invalid=762 0287: dt=0.448000, rms=0.582 (-0.020%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.574, neg=0, invalid=762 iter 0, gcam->neg = 346 after 13 iterations, nbhd size=1, neg = 0 0288: dt=1.396561, rms=0.555 (3.312%), neg=0, invalid=762 0289: dt=0.000013, rms=0.555 (0.005%), neg=0, invalid=762 0290: dt=0.000013, rms=0.555 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.556, neg=0, invalid=762 0291: dt=0.256000, rms=0.553 (0.675%), neg=0, invalid=762 0292: dt=0.192000, rms=0.552 (0.136%), neg=0, invalid=762 0293: dt=0.192000, rms=0.552 (0.081%), neg=0, invalid=762 0294: dt=0.192000, rms=0.552 (-0.038%), neg=0, invalid=762 label assignment complete, 0 changed (0.00%) label assignment complete, 0 changed (0.00%) ***************** morphing with label term set to 0 ******************************* **************** pass 1 of 1 ************************ enabling zero nodes setting smoothness coefficient to 0.008 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0295: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0296: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.031 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0297: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0298: dt=5.184000, rms=0.550 (0.004%), neg=0, invalid=762 0299: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762 setting smoothness coefficient to 0.118 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0300: dt=0.000000, rms=0.550 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.550, neg=0, invalid=762 0301: dt=11.200000, rms=0.549 (0.146%), neg=0, invalid=762 0302: dt=11.200000, rms=0.549 (0.047%), neg=0, invalid=762 0303: dt=11.200000, rms=0.549 (0.063%), neg=0, invalid=762 0304: dt=11.200000, rms=0.548 (0.028%), neg=0, invalid=762 0305: dt=11.200000, rms=0.548 (-0.041%), neg=0, invalid=762 setting smoothness coefficient to 0.400 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.549, neg=0, invalid=762 0306: dt=0.000000, rms=0.549 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.549, neg=0, invalid=762 iter 0, gcam->neg = 21 after 10 iterations, nbhd size=1, neg = 0 0307: dt=25.112108, rms=0.542 (1.334%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 6 iterations, nbhd size=1, neg = 0 0308: dt=5.656566, rms=0.539 (0.550%), neg=0, invalid=762 0309: dt=2.880000, rms=0.538 (0.052%), neg=0, invalid=762 0310: dt=2.880000, rms=0.538 (0.040%), neg=0, invalid=762 0311: dt=2.880000, rms=0.538 (0.054%), neg=0, invalid=762 0312: dt=2.880000, rms=0.538 (0.056%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0313: dt=2.880000, rms=0.537 (0.068%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 8 iterations, nbhd size=1, neg = 0 0314: dt=2.880000, rms=0.537 (0.056%), neg=0, invalid=762 0315: dt=2.880000, rms=0.536 (0.146%), neg=0, invalid=762 0316: dt=2.880000, rms=0.535 (0.177%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 1 iterations, nbhd size=0, neg = 0 0317: dt=2.880000, rms=0.534 (0.181%), neg=0, invalid=762 iter 0, gcam->neg = 5 after 12 iterations, nbhd size=1, neg = 0 0318: dt=2.880000, rms=0.533 (0.152%), neg=0, invalid=762 iter 0, gcam->neg = 6 after 2 iterations, nbhd size=0, neg = 0 0319: dt=2.880000, rms=0.533 (0.111%), neg=0, invalid=762 iter 0, gcam->neg = 1 after 0 iterations, nbhd size=0, neg = 0 0320: dt=2.880000, rms=0.532 (0.103%), neg=0, invalid=762 0321: dt=0.003938, rms=0.532 (0.000%), neg=0, invalid=762 0322: dt=0.003938, rms=0.532 (-0.000%), neg=0, invalid=762 setting smoothness coefficient to 1.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.537, neg=0, invalid=762 0323: dt=0.000000, rms=0.537 (0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.537, neg=0, invalid=762 0324: dt=0.000000, rms=0.537 (0.000%), neg=0, invalid=762 resetting metric properties... setting smoothness coefficient to 2.000 blurring input image with Gaussian with sigma=2.000... 0000: dt=0.000, rms=0.529, neg=0, invalid=762 iter 0, gcam->neg = 303 after 15 iterations, nbhd size=1, neg = 0 0325: dt=1.050351, rms=0.522 (1.328%), neg=0, invalid=762 0326: dt=0.000020, rms=0.522 (0.000%), neg=0, invalid=762 0327: dt=0.000020, rms=0.522 (-0.000%), neg=0, invalid=762 blurring input image with Gaussian with sigma=0.500... 0000: dt=0.000, rms=0.522, neg=0, invalid=762 0328: dt=0.325556, rms=0.519 (0.642%), neg=0, invalid=762 iter 0, gcam->neg = 64 after 11 iterations, nbhd size=1, neg = 0 0329: dt=0.720000, rms=0.514 (0.896%), neg=0, invalid=762 iter 0, gcam->neg = 2 after 9 iterations, nbhd size=1, neg = 0 0330: dt=0.384000, rms=0.513 (0.259%), neg=0, invalid=762 iter 0, gcam->neg = 171 after 11 iterations, nbhd size=1, neg = 0 0331: dt=0.622449, rms=0.513 (0.084%), neg=0, invalid=762 iter 0, gcam->neg = 30 after 10 iterations, nbhd size=1, neg = 0 0332: dt=0.622449, rms=0.513 (-0.325%), neg=0, invalid=762 writing output transformation to transforms/talairach.m3z... GCAMwrite mri_ca_register took 0 hours, 52 minutes and 3 seconds. mri_ca_register utimesec 3118.241397 mri_ca_register stimesec 4.655900 mri_ca_register ru_maxrss 1330192 mri_ca_register ru_ixrss 0 mri_ca_register ru_idrss 0 mri_ca_register ru_isrss 0 mri_ca_register ru_minflt 6750395 mri_ca_register ru_majflt 8 mri_ca_register ru_nswap 0 mri_ca_register ru_inblock 1696 mri_ca_register ru_oublock 64400 mri_ca_register ru_msgsnd 0 mri_ca_register ru_msgrcv 0 mri_ca_register ru_nsignals 0 mri_ca_register ru_nvcsw 9 mri_ca_register ru_nivcsw 7718 FSRUNTIME@ mri_ca_register 0.8675 hours 1 threads #-------------------------------------- #@# SubCort Seg Wed Feb 3 10:49:16 PST 2021 mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz sysname Linux hostname HHS-SLH-F036878 machine x86_64 setenv SUBJECTS_DIR /home/bdl/freesurfer/subjects cd /home/bdl/freesurfer/subjects/SD06/mri mri_ca_label -relabel_unlikely 9 .3 -prior 0.5 -align norm.mgz transforms/talairach.m3z /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca aseg.auto_noCCseg.mgz == Number of threads available to mri_ca_label for OpenMP = 1 == relabeling unlikely voxels with window_size = 9 and prior threshold 0.30 using Gibbs prior factor = 0.500 renormalizing sequences with structure alignment, equivalent to: -renormalize -renormalize_mean 0.500 -regularize 0.500 reading 1 input volumes reading classifier array from /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca reading input volume from norm.mgz average std[0] = 7.3 reading transform from transforms/talairach.m3z setting orig areas to linear transform determinant scaled 5.52 Atlas used for the 3D morph was /home/bdl/freesurfer/average/RB_all_2016-05-10.vc700.gca average std = 7.3 using min determinant for regularization = 5.3 0 singular and 0 ill-conditioned covariance matrices regularized labeling volume... renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.16259 (20) mri peak = 0.08597 (45) Left_Lateral_Ventricle (4): linear fit = 2.43 x + 0.0 (629 voxels, overlap=0.010) Left_Lateral_Ventricle (4): linear fit = 1.50 x + 0.0 (629 voxels, peak = 49), gca=30.0 gca peak = 0.17677 (13) mri peak = 0.11797 (46) Right_Lateral_Ventricle (43): linear fit = 3.18 x + 0.0 (989 voxels, overlap=0.009) Right_Lateral_Ventricle (43): linear fit = 1.50 x + 0.0 (989 voxels, peak = 41), gca=19.5 gca peak = 0.28129 (95) mri peak = 0.07951 (114) Right_Pallidum (52): linear fit = 1.18 x + 0.0 (553 voxels, overlap=0.032) Right_Pallidum (52): linear fit = 1.18 x + 0.0 (553 voxels, peak = 113), gca=112.6 gca peak = 0.16930 (96) mri peak = 0.08334 (107) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (504 voxels, overlap=0.210) Left_Pallidum (13): linear fit = 1.12 x + 0.0 (504 voxels, peak = 107), gca=107.0 gca peak = 0.24553 (55) mri peak = 0.07939 (82) Right_Hippocampus (53): linear fit = 1.36 x + 0.0 (385 voxels, overlap=0.025) Right_Hippocampus (53): linear fit = 1.36 x + 0.0 (385 voxels, peak = 75), gca=74.5 gca peak = 0.30264 (59) mri peak = 0.07125 (76) Left_Hippocampus (17): linear fit = 1.29 x + 0.0 (427 voxels, overlap=0.024) Left_Hippocampus (17): linear fit = 1.29 x + 0.0 (427 voxels, peak = 76), gca=76.4 gca peak = 0.07580 (103) mri peak = 0.05955 (105) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (27976 voxels, overlap=0.693) Right_Cerebral_White_Matter (41): linear fit = 1.05 x + 0.0 (27976 voxels, peak = 109), gca=108.7 gca peak = 0.07714 (104) mri peak = 0.06028 (104) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (36340 voxels, overlap=0.794) Left_Cerebral_White_Matter (2): linear fit = 1.02 x + 0.0 (36340 voxels, peak = 107), gca=106.6 gca peak = 0.09712 (58) mri peak = 0.04480 (75) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (17969 voxels, overlap=0.022) Left_Cerebral_Cortex (3): linear fit = 1.29 x + 0.0 (17969 voxels, peak = 75), gca=75.1 gca peak = 0.11620 (58) mri peak = 0.04902 (71) Right_Cerebral_Cortex (42): linear fit = 1.29 x + 0.0 (14435 voxels, overlap=0.093) Right_Cerebral_Cortex (42): linear fit = 1.29 x + 0.0 (14435 voxels, peak = 75), gca=75.1 gca peak = 0.30970 (66) mri peak = 0.13980 (94) Right_Caudate (50): linear fit = 1.41 x + 0.0 (295 voxels, overlap=0.018) Right_Caudate (50): linear fit = 1.41 x + 0.0 (295 voxels, peak = 93), gca=93.4 gca peak = 0.15280 (69) mri peak = 0.10514 (94) Left_Caudate (11): linear fit = 1.27 x + 0.0 (544 voxels, overlap=0.017) Left_Caudate (11): linear fit = 1.27 x + 0.0 (544 voxels, peak = 88), gca=88.0 gca peak = 0.13902 (56) mri peak = 0.06762 (74) Left_Cerebellum_Cortex (8): linear fit = 1.34 x + 0.0 (10393 voxels, overlap=0.001) Left_Cerebellum_Cortex (8): linear fit = 1.34 x + 0.0 (10393 voxels, peak = 75), gca=74.8 gca peak = 0.14777 (55) mri peak = 0.05507 (70) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (9858 voxels, overlap=0.003) Right_Cerebellum_Cortex (47): linear fit = 1.26 x + 0.0 (9858 voxels, peak = 70), gca=69.6 gca peak = 0.16765 (84) mri peak = 0.07172 (79) Left_Cerebellum_White_Matter (7): linear fit = 0.95 x + 0.0 (4347 voxels, overlap=0.985) Left_Cerebellum_White_Matter (7): linear fit = 0.95 x + 0.0 (4347 voxels, peak = 80), gca=80.2 gca peak = 0.18739 (84) mri peak = 0.08655 (77) Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (3590 voxels, overlap=0.863) Right_Cerebellum_White_Matter (46): linear fit = 0.93 x + 0.0 (3590 voxels, peak = 78), gca=77.7 gca peak = 0.29869 (57) mri peak = 0.10309 (72) Left_Amygdala (18): linear fit = 1.24 x + 0.0 (291 voxels, overlap=0.053) Left_Amygdala (18): linear fit = 1.24 x + 0.0 (291 voxels, peak = 70), gca=70.4 gca peak = 0.33601 (57) mri peak = 0.07650 (72) Right_Amygdala (54): linear fit = 1.27 x + 0.0 (274 voxels, overlap=0.060) Right_Amygdala (54): linear fit = 1.27 x + 0.0 (274 voxels, peak = 73), gca=72.7 gca peak = 0.11131 (90) mri peak = 0.06731 (100) Left_Thalamus_Proper (10): linear fit = 1.21 x + 0.0 (2497 voxels, overlap=0.014) Left_Thalamus_Proper (10): linear fit = 1.21 x + 0.0 (2497 voxels, peak = 108), gca=108.5 gca peak = 0.11793 (83) mri peak = 0.06398 (102) Right_Thalamus_Proper (49): linear fit = 1.26 x + 0.0 (2346 voxels, overlap=0.010) Right_Thalamus_Proper (49): linear fit = 1.26 x + 0.0 (2346 voxels, peak = 105), gca=105.0 gca peak = 0.08324 (81) mri peak = 0.08273 (100) Left_Putamen (12): linear fit = 1.25 x + 0.0 (1003 voxels, overlap=0.014) Left_Putamen (12): linear fit = 1.25 x + 0.0 (1003 voxels, peak = 102), gca=101.7 gca peak = 0.10360 (77) mri peak = 0.07735 (104) Right_Putamen (51): linear fit = 1.27 x + 0.0 (853 voxels, overlap=0.017) Right_Putamen (51): linear fit = 1.27 x + 0.0 (853 voxels, peak = 98), gca=98.2 gca peak = 0.08424 (78) mri peak = 0.10060 (85) Brain_Stem (16): linear fit = 1.05 x + 0.0 (8147 voxels, overlap=0.476) Brain_Stem (16): linear fit = 1.05 x + 0.0 (8147 voxels, peak = 82), gca=82.3 gca peak = 0.12631 (89) mri peak = 0.08989 (98) Right_VentralDC (60): linear fit = 1.11 x + 0.0 (852 voxels, overlap=0.352) Right_VentralDC (60): linear fit = 1.11 x + 0.0 (852 voxels, peak = 98), gca=98.3 gca peak = 0.14500 (87) mri peak = 0.06823 (98) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (972 voxels, overlap=0.459) Left_VentralDC (28): linear fit = 1.12 x + 0.0 (972 voxels, peak = 98), gca=97.9 gca peak = 0.14975 (24) mri peak = 0.42857 (54) gca peak = 0.19357 (14) mri peak = 0.14907 (33) Fourth_Ventricle (15): linear fit = 2.11 x + 0.0 (71 voxels, overlap=0.085) Fourth_Ventricle (15): linear fit = 2.11 x + 0.0 (71 voxels, peak = 29), gca=29.5 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.16825 (27) gca peak Left_Thalamus = 1.00000 (94) gca peak Third_Ventricle = 0.14975 (24) gca peak Fourth_Ventricle = 0.19357 (14) gca peak CSF = 0.23379 (36) gca peak Left_Accumbens_area = 0.70037 (62) gca peak Left_undetermined = 1.00000 (26) gca peak Left_vessel = 0.75997 (52) gca peak Left_choroid_plexus = 0.12089 (35) gca peak Right_Inf_Lat_Vent = 0.24655 (23) gca peak Right_Accumbens_area = 0.45042 (65) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14516 (37) gca peak Fifth_Ventricle = 0.65475 (32) gca peak WM_hypointensities = 0.07854 (76) gca peak non_WM_hypointensities = 0.08491 (43) gca peak Optic_Chiasm = 0.71127 (75) not using caudate to estimate GM means estimating mean gm scale to be 1.29 x + 0.0 estimating mean wm scale to be 1.04 x + 0.0 estimating mean csf scale to be 1.50 x + 0.0 Left_Putamen too bright - rescaling by 0.953 (from 1.255) to 96.9 (was 101.7) Left_Pallidum too bright - rescaling by 0.975 (from 1.115) to 104.4 (was 107.0) Right_Putamen too bright - rescaling by 0.987 (from 1.275) to 96.9 (was 98.2) Right_Pallidum too bright - rescaling by 0.927 (from 1.185) to 104.4 (was 112.6) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt renormalizing by structure alignment.... renormalizing input #0 gca peak = 0.12544 (31) mri peak = 0.08597 (45) Left_Lateral_Ventricle (4): linear fit = 1.62 x + 0.0 (629 voxels, overlap=0.113) Left_Lateral_Ventricle (4): linear fit = 1.50 x + 0.0 (629 voxels, peak = 50), gca=46.5 gca peak = 0.13981 (19) mri peak = 0.11797 (46) Right_Lateral_Ventricle (43): linear fit = 2.27 x + 0.0 (989 voxels, overlap=0.098) Right_Lateral_Ventricle (43): linear fit = 1.50 x + 0.0 (989 voxels, peak = 43), gca=28.5 gca peak = 0.21143 (103) mri peak = 0.07951 (114) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (553 voxels, overlap=0.846) Right_Pallidum (52): linear fit = 1.09 x + 0.0 (553 voxels, peak = 112), gca=111.8 gca peak = 0.17154 (104) mri peak = 0.08334 (107) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (504 voxels, overlap=0.891) Left_Pallidum (13): linear fit = 1.01 x + 0.0 (504 voxels, peak = 106), gca=105.6 gca peak = 0.22856 (75) mri peak = 0.07939 (82) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (385 voxels, overlap=0.936) Right_Hippocampus (53): linear fit = 1.00 x + 0.0 (385 voxels, peak = 75), gca=75.0 gca peak = 0.24544 (73) mri peak = 0.07125 (76) Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (427 voxels, overlap=0.805) Left_Hippocampus (17): linear fit = 0.96 x + 0.0 (427 voxels, peak = 70), gca=70.4 gca peak = 0.07551 (109) mri peak = 0.05955 (105) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27976 voxels, overlap=0.889) Right_Cerebral_White_Matter (41): linear fit = 1.00 x + 0.0 (27976 voxels, peak = 109), gca=109.0 gca peak = 0.07686 (107) mri peak = 0.06028 (104) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (36340 voxels, overlap=0.886) Left_Cerebral_White_Matter (2): linear fit = 1.00 x + 0.0 (36340 voxels, peak = 108), gca=107.5 gca peak = 0.07502 (75) mri peak = 0.04480 (75) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (17969 voxels, overlap=0.966) Left_Cerebral_Cortex (3): linear fit = 0.99 x + 0.0 (17969 voxels, peak = 74), gca=73.9 gca peak = 0.09084 (75) mri peak = 0.04902 (71) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (14435 voxels, overlap=0.955) Right_Cerebral_Cortex (42): linear fit = 0.98 x + 0.0 (14435 voxels, peak = 73), gca=73.1 gca peak = 0.21346 (93) mri peak = 0.13980 (94) Right_Caudate (50): linear fit = 1.00 x + 0.0 (295 voxels, overlap=0.992) Right_Caudate (50): linear fit = 1.00 x + 0.0 (295 voxels, peak = 93), gca=93.0 gca peak = 0.13297 (87) mri peak = 0.10514 (94) Left_Caudate (11): linear fit = 1.00 x + 0.0 (544 voxels, overlap=0.875) Left_Caudate (11): linear fit = 1.00 x + 0.0 (544 voxels, peak = 87), gca=87.0 gca peak = 0.10936 (74) mri peak = 0.06762 (74) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (10393 voxels, overlap=0.952) Left_Cerebellum_Cortex (8): linear fit = 1.00 x + 0.0 (10393 voxels, peak = 74), gca=74.0 gca peak = 0.12552 (69) mri peak = 0.05507 (70) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (9858 voxels, overlap=0.960) Right_Cerebellum_Cortex (47): linear fit = 1.00 x + 0.0 (9858 voxels, peak = 69), gca=69.0 gca peak = 0.16660 (81) mri peak = 0.07172 (79) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (4347 voxels, overlap=0.960) Left_Cerebellum_White_Matter (7): linear fit = 1.04 x + 0.0 (4347 voxels, peak = 85), gca=84.6 gca peak = 0.19509 (78) mri peak = 0.08655 (77) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (3590 voxels, overlap=0.970) Right_Cerebellum_White_Matter (46): linear fit = 1.00 x + 0.0 (3590 voxels, peak = 78), gca=77.6 gca peak = 0.29432 (72) mri peak = 0.10309 (72) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (291 voxels, overlap=0.950) Left_Amygdala (18): linear fit = 0.95 x + 0.0 (291 voxels, peak = 69), gca=68.8 gca peak = 0.25277 (73) mri peak = 0.07650 (72) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (274 voxels, overlap=0.959) Right_Amygdala (54): linear fit = 1.03 x + 0.0 (274 voxels, peak = 76), gca=75.6 gca peak = 0.10153 (106) mri peak = 0.06731 (100) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (2497 voxels, overlap=0.898) Left_Thalamus_Proper (10): linear fit = 1.00 x + 0.0 (2497 voxels, peak = 105), gca=105.5 gca peak = 0.08712 (102) mri peak = 0.06398 (102) Right_Thalamus_Proper (49): linear fit = 0.98 x + 0.0 (2346 voxels, overlap=0.811) Right_Thalamus_Proper (49): linear fit = 0.98 x + 0.0 (2346 voxels, peak = 99), gca=99.5 gca peak = 0.08888 (97) mri peak = 0.08273 (100) Left_Putamen (12): linear fit = 1.08 x + 0.0 (1003 voxels, overlap=0.612) Left_Putamen (12): linear fit = 1.08 x + 0.0 (1003 voxels, peak = 104), gca=104.3 gca peak = 0.08011 (95) mri peak = 0.07735 (104) Right_Putamen (51): linear fit = 1.00 x + 0.0 (853 voxels, overlap=0.802) Right_Putamen (51): linear fit = 1.00 x + 0.0 (853 voxels, peak = 95), gca=95.5 gca peak = 0.06835 (85) mri peak = 0.10060 (85) Brain_Stem (16): linear fit = 1.00 x + 0.0 (8147 voxels, overlap=0.696) Brain_Stem (16): linear fit = 1.00 x + 0.0 (8147 voxels, peak = 85), gca=85.0 gca peak = 0.11535 (95) mri peak = 0.08989 (98) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (852 voxels, overlap=0.771) Right_VentralDC (60): linear fit = 1.00 x + 0.0 (852 voxels, peak = 95), gca=95.5 gca peak = 0.14336 (97) mri peak = 0.06823 (98) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (972 voxels, overlap=0.842) Left_VentralDC (28): linear fit = 1.00 x + 0.0 (972 voxels, peak = 97), gca=97.5 gca peak = 0.12656 (38) mri peak = 0.42857 (54) gca peak = 0.16542 (24) mri peak = 0.14907 (33) Fourth_Ventricle (15): linear fit = 1.32 x + 0.0 (71 voxels, overlap=0.292) Fourth_Ventricle (15): linear fit = 1.32 x + 0.0 (71 voxels, peak = 32), gca=31.6 gca peak Unknown = 0.94835 ( 0) gca peak Left_Inf_Lat_Vent = 0.17746 (35) gca peak Left_Thalamus = 0.72551 (122) gca peak Third_Ventricle = 0.12656 (38) gca peak CSF = 0.15446 (55) gca peak Left_Accumbens_area = 0.63614 (79) gca peak Left_undetermined = 0.95280 (34) gca peak Left_vessel = 0.75962 (52) gca peak Left_choroid_plexus = 0.12303 (35) gca peak Right_Inf_Lat_Vent = 0.19032 (31) gca peak Right_Accumbens_area = 0.32732 (91) gca peak Right_vessel = 0.82168 (52) gca peak Right_choroid_plexus = 0.14504 (37) gca peak Fifth_Ventricle = 0.51780 (46) gca peak WM_hypointensities = 0.07952 (79) gca peak non_WM_hypointensities = 0.09744 (45) gca peak Optic_Chiasm = 0.70565 (75) not using caudate to estimate GM means estimating mean gm scale to be 0.99 x + 0.0 estimating mean wm scale to be 1.00 x + 0.0 estimating mean csf scale to be 1.44 x + 0.0 Left_Putamen too bright - rescaling by 0.934 (from 1.075) to 97.4 (was 104.3) Left_Pallidum too bright - rescaling by 0.995 (from 1.015) to 105.0 (was 105.6) Right_Pallidum too bright - rescaling by 0.940 (from 1.085) to 105.0 (was 111.8) saving intensity scales to aseg.auto_noCCseg.label_intensities.txt saving sequentially combined intensity scales to aseg.auto_noCCseg.label_intensities.txt 119501 voxels changed in iteration 0 of unlikely voxel relabeling 180 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 110763 gm and wm labels changed (%35 to gray, %65 to white out of all changed labels) 920 hippocampal voxels changed. 0 amygdala voxels changed. pass 1: 107548 changed. image ll: -2.275, PF=0.500 pass 2: 26261 changed. image ll: -2.272, PF=0.500 pass 3: 7684 changed. pass 4: 2785 changed. 75406 voxels changed in iteration 0 of unlikely voxel relabeling 275 voxels changed in iteration 1 of unlikely voxel relabeling 14 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 6911 voxels changed in iteration 0 of unlikely voxel relabeling 95 voxels changed in iteration 1 of unlikely voxel relabeling 0 voxels changed in iteration 2 of unlikely voxel relabeling 6389 voxels changed in iteration 0 of unlikely voxel relabeling 103 voxels changed in iteration 1 of unlikely voxel relabeling 21 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling 5588 voxels changed in iteration 0 of unlikely voxel relabeling 45 voxels changed in iteration 1 of unlikely voxel relabeling 9 voxels changed in iteration 2 of unlikely voxel relabeling 0 voxels changed in iteration 3 of unlikely voxel relabeling MRItoUCHAR: min=0, max=85 MRItoUCHAR: converting to UCHAR writing labeled volume to aseg.auto_noCCseg.mgz mri_ca_label utimesec 1852.843633 mri_ca_label stimesec 0.395987 mri_ca_label ru_maxrss 2113232 mri_ca_label ru_ixrss 0 mri_ca_label ru_idrss 0 mri_ca_label ru_isrss 0 mri_ca_label ru_minflt 631980 mri_ca_label ru_majflt 8 mri_ca_label ru_nswap 0 mri_ca_label ru_inblock 1616 mri_ca_label ru_oublock 400 mri_ca_label ru_msgsnd 0 mri_ca_label ru_msgrcv 0 mri_ca_label ru_nsignals 0 mri_ca_label ru_nvcsw 10 mri_ca_label ru_nivcsw 4204 auto-labeling took 30 minutes and 53 seconds. mri_cc -aseg aseg.auto_noCCseg.mgz -o aseg.auto.mgz -lta /home/bdl/freesurfer/subjects/SD06/mri/transforms/cc_up.lta SD06 will read input aseg from aseg.auto_noCCseg.mgz writing aseg with cc labels to aseg.auto.mgz will write lta as /home/bdl/freesurfer/subjects/SD06/mri/transforms/cc_up.lta reading aseg from /home/bdl/freesurfer/subjects/SD06/mri/aseg.auto_noCCseg.mgz reading norm from /home/bdl/freesurfer/subjects/SD06/mri/norm.mgz 76013 voxels in left wm, 75491 in right wm, xrange [114, 132] searching rotation angles z=[-7 7], y=[-12 2] searching scale 1 Z rot -7.5 searching scale 1 Z rot -7.2 searching scale 1 Z rot -7.0 searching scale 1 Z rot -6.7 searching scale 1 Z rot -6.5 searching scale 1 Z rot -6.2 searching scale 1 Z rot -6.0 searching scale 1 Z rot -5.7 searching scale 1 Z rot -5.5 searching scale 1 Z rot -5.2 searching scale 1 Z rot -5.0 searching scale 1 Z rot -4.7 searching scale 1 Z rot -4.5 searching scale 1 Z rot -4.2 searching scale 1 Z rot -4.0 searching scale 1 Z rot -3.7 searching scale 1 Z rot -3.5 searching scale 1 Z rot -3.2 searching scale 1 Z rot -3.0 searching scale 1 Z rot -2.7 searching scale 1 Z rot -2.5 searching scale 1 Z rot -2.2 searching scale 1 Z rot -2.0 searching scale 1 Z rot -1.7 searching scale 1 Z rot -1.5 searching scale 1 Z rot -1.2 searching scale 1 Z rot -1.0 searching scale 1 Z rot -0.7 searching scale 1 Z rot -0.5 searching scale 1 Z rot -0.2 searching scale 1 Z rot 0.0 searching scale 1 Z rot 0.3 searching scale 1 Z rot 0.5 searching scale 1 Z rot 0.8 searching scale 1 Z rot 1.0 searching scale 1 Z rot 1.3 searching scale 1 Z rot 1.5 searching scale 1 Z rot 1.8 searching scale 1 Z rot 2.0 searching scale 1 Z rot 2.3 searching scale 1 Z rot 2.5 searching scale 1 Z rot 2.8 searching scale 1 Z rot 3.0 searching scale 1 Z rot 3.3 searching scale 1 Z rot 3.5 searching scale 1 Z rot 3.8 searching scale 1 Z rot 4.0 searching scale 1 Z rot 4.3 searching scale 1 Z rot 4.5 searching scale 1 Z rot 4.8 searching scale 1 Z rot 5.0 searching scale 1 Z rot 5.3 searching scale 1 Z rot 5.5 searching scale 1 Z rot 5.8 searching scale 1 Z rot 6.0 searching scale 1 Z rot 6.3 searching scale 1 Z rot 6.5 searching scale 1 Z rot 6.8 global minimum found at slice 122.0, rotations (-5.31, 0.01) final transformation (x=122.0, yr=-5.314, zr=0.009): 0.99570 -0.00016 -0.09261 16.26590; 0.00016 1.00000 -0.00001 19.98223; 0.09261 0.00000 0.99570 12.15247; 0.00000 0.00000 0.00000 1.00000; updating x range to be [124, 132] in xformed coordinates best xformed slice 128 cc center is found at 128 108 105 eigenvectors: -0.00275 -0.00472 0.99999; -0.70239 -0.71177 -0.00530; 0.71179 -0.70239 -0.00136; writing aseg with callosum to /home/bdl/freesurfer/subjects/SD06/mri/aseg.auto.mgz... corpus callosum segmentation took 1.0 minutes #-------------------------------------- #@# Merge ASeg Wed Feb 3 11:21:09 PST 2021 cp aseg.auto.mgz aseg.presurf.mgz #-------------------------------------------- #@# Intensity Normalization2 Wed Feb 3 11:21:09 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_normalize -mprage -aseg aseg.presurf.mgz -mask brainmask.mgz norm.mgz brain.mgz assuming input volume is MGH (Van der Kouwe) MP-RAGE using segmentation for initial intensity normalization using MR volume brainmask.mgz to mask input volume... reading from norm.mgz... Reading aseg aseg.presurf.mgz normalizing image... processing with aseg removing outliers in the aseg WM... 2601 control points removed Building bias image building Voronoi diagram... performing soap bubble smoothing, sigma = 0... Smoothing with sigma 8 Applying bias correction building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Iterating 2 times --------------------------------- 3d normalization pass 1 of 2 white matter peak found at 110 white matter peak found at 89 gm peak at 67 (67), valley at 55 (55) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... --------------------------------- 3d normalization pass 2 of 2 white matter peak found at 110 white matter peak found at 90 gm peak at 68 (68), valley at 0 (-1) csf peak at 34, setting threshold to 56 building Voronoi diagram... performing soap bubble smoothing, sigma = 8... Done iterating --------------------------------- writing output to brain.mgz 3D bias adjustment took 1 minutes and 30 seconds. #-------------------------------------------- #@# Mask BFS Wed Feb 3 11:22:40 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_mask -T 5 brain.mgz brainmask.mgz brain.finalsurfs.mgz threshold mask volume at 5 DoAbs = 0 Found 1212733 voxels in mask (pct= 7.23) Writing masked volume to brain.finalsurfs.mgz...done. #-------------------------------------------- #@# WM Segmentation Wed Feb 3 11:22:40 PST 2021 mri_segment -mprage brain.mgz wm.seg.mgz doing initial intensity segmentation... using local statistics to label ambiguous voxels... computing class statistics for intensity windows... WM (105.0): 107.6 +- 6.9 [82.0 --> 125.0] GM (66.0) : 62.5 +- 13.4 [30.0 --> 95.0] setting bottom of white matter range to 75.9 setting top of gray matter range to 89.3 doing initial intensity segmentation... using local statistics to label ambiguous voxels... using local geometry to label remaining ambiguous voxels... reclassifying voxels using Gaussian border classifier... removing voxels with positive offset direction... smoothing T1 volume with sigma = 0.250 removing 1-dimensional structures... 28675 sparsely connected voxels removed... thickening thin strands.... 20 segments, 3836 filled 30459 bright non-wm voxels segmented. 22541 diagonally connected voxels added... white matter segmentation took 1.2 minutes writing output to wm.seg.mgz... assuming input volume is MGH (Van der Kouwe) MP-RAGE mri_edit_wm_with_aseg -keep-in wm.seg.mgz brain.mgz aseg.presurf.mgz wm.asegedit.mgz preserving editing changes in input volume... auto filling took 0.45 minutes reading wm segmentation from wm.seg.mgz... 3717 voxels added to wm to prevent paths from MTL structures to cortex 11348 additional wm voxels added 0 additional wm voxels added SEG EDIT: 64108 voxels turned on, 5270 voxels turned off. propagating editing to output volume from wm.seg.mgz 115,126,128 old 102 new 102 115,126,128 old 102 new 102 writing edited volume to wm.asegedit.mgz.... mri_pretess wm.asegedit.mgz wm norm.mgz wm.mgz Iteration Number : 1 pass 1 (xy+): 230 found - 230 modified | TOTAL: 230 pass 2 (xy+): 0 found - 230 modified | TOTAL: 230 pass 1 (xy-): 228 found - 228 modified | TOTAL: 458 pass 2 (xy-): 0 found - 228 modified | TOTAL: 458 pass 1 (yz+): 235 found - 235 modified | TOTAL: 693 pass 2 (yz+): 0 found - 235 modified | TOTAL: 693 pass 1 (yz-): 243 found - 243 modified | TOTAL: 936 pass 2 (yz-): 0 found - 243 modified | TOTAL: 936 pass 1 (xz+): 251 found - 251 modified | TOTAL: 1187 pass 2 (xz+): 0 found - 251 modified | TOTAL: 1187 pass 1 (xz-): 257 found - 257 modified | TOTAL: 1444 pass 2 (xz-): 0 found - 257 modified | TOTAL: 1444 Iteration Number : 1 pass 1 (+++): 551 found - 551 modified | TOTAL: 551 pass 2 (+++): 0 found - 551 modified | TOTAL: 551 pass 1 (+++): 601 found - 601 modified | TOTAL: 1152 pass 2 (+++): 0 found - 601 modified | TOTAL: 1152 pass 1 (+++): 572 found - 572 modified | TOTAL: 1724 pass 2 (+++): 0 found - 572 modified | TOTAL: 1724 pass 1 (+++): 635 found - 635 modified | TOTAL: 2359 pass 2 (+++): 0 found - 635 modified | TOTAL: 2359 Iteration Number : 1 pass 1 (++): 781 found - 781 modified | TOTAL: 781 pass 2 (++): 0 found - 781 modified | TOTAL: 781 pass 1 (+-): 674 found - 674 modified | TOTAL: 1455 pass 2 (+-): 3 found - 677 modified | TOTAL: 1458 pass 3 (+-): 0 found - 677 modified | TOTAL: 1458 pass 1 (--): 708 found - 708 modified | TOTAL: 2166 pass 2 (--): 2 found - 710 modified | TOTAL: 2168 pass 3 (--): 0 found - 710 modified | TOTAL: 2168 pass 1 (-+): 675 found - 675 modified | TOTAL: 2843 pass 2 (-+): 0 found - 675 modified | TOTAL: 2843 Iteration Number : 2 pass 1 (xy+): 227 found - 227 modified | TOTAL: 227 pass 2 (xy+): 0 found - 227 modified | TOTAL: 227 pass 1 (xy-): 200 found - 200 modified | TOTAL: 427 pass 2 (xy-): 0 found - 200 modified | TOTAL: 427 pass 1 (yz+): 253 found - 253 modified | TOTAL: 680 pass 2 (yz+): 0 found - 253 modified | TOTAL: 680 pass 1 (yz-): 203 found - 203 modified | TOTAL: 883 pass 2 (yz-): 0 found - 203 modified | TOTAL: 883 pass 1 (xz+): 215 found - 215 modified | TOTAL: 1098 pass 2 (xz+): 0 found - 215 modified | TOTAL: 1098 pass 1 (xz-): 179 found - 179 modified | TOTAL: 1277 pass 2 (xz-): 0 found - 179 modified | TOTAL: 1277 Iteration Number : 2 pass 1 (+++): 66 found - 66 modified | TOTAL: 66 pass 2 (+++): 0 found - 66 modified | TOTAL: 66 pass 1 (+++): 64 found - 64 modified | TOTAL: 130 pass 2 (+++): 0 found - 64 modified | TOTAL: 130 pass 1 (+++): 55 found - 55 modified | TOTAL: 185 pass 2 (+++): 0 found - 55 modified | TOTAL: 185 pass 1 (+++): 82 found - 82 modified | TOTAL: 267 pass 2 (+++): 0 found - 82 modified | TOTAL: 267 Iteration Number : 2 pass 1 (++): 109 found - 109 modified | TOTAL: 109 pass 2 (++): 0 found - 109 modified | TOTAL: 109 pass 1 (+-): 126 found - 126 modified | TOTAL: 235 pass 2 (+-): 0 found - 126 modified | TOTAL: 235 pass 1 (--): 123 found - 123 modified | TOTAL: 358 pass 2 (--): 0 found - 123 modified | TOTAL: 358 pass 1 (-+): 94 found - 94 modified | TOTAL: 452 pass 2 (-+): 0 found - 94 modified | TOTAL: 452 Iteration Number : 3 pass 1 (xy+): 28 found - 28 modified | TOTAL: 28 pass 2 (xy+): 0 found - 28 modified | TOTAL: 28 pass 1 (xy-): 26 found - 26 modified | TOTAL: 54 pass 2 (xy-): 0 found - 26 modified | TOTAL: 54 pass 1 (yz+): 32 found - 32 modified | TOTAL: 86 pass 2 (yz+): 0 found - 32 modified | TOTAL: 86 pass 1 (yz-): 24 found - 24 modified | TOTAL: 110 pass 2 (yz-): 0 found - 24 modified | TOTAL: 110 pass 1 (xz+): 31 found - 31 modified | TOTAL: 141 pass 2 (xz+): 0 found - 31 modified | TOTAL: 141 pass 1 (xz-): 18 found - 18 modified | TOTAL: 159 pass 2 (xz-): 0 found - 18 modified | TOTAL: 159 Iteration Number : 3 pass 1 (+++): 9 found - 9 modified | TOTAL: 9 pass 2 (+++): 0 found - 9 modified | TOTAL: 9 pass 1 (+++): 11 found - 11 modified | TOTAL: 20 pass 2 (+++): 0 found - 11 modified | TOTAL: 20 pass 1 (+++): 9 found - 9 modified | TOTAL: 29 pass 2 (+++): 0 found - 9 modified | TOTAL: 29 pass 1 (+++): 10 found - 10 modified | TOTAL: 39 pass 2 (+++): 0 found - 10 modified | TOTAL: 39 Iteration Number : 3 pass 1 (++): 20 found - 20 modified | TOTAL: 20 pass 2 (++): 0 found - 20 modified | TOTAL: 20 pass 1 (+-): 15 found - 15 modified | TOTAL: 35 pass 2 (+-): 0 found - 15 modified | TOTAL: 35 pass 1 (--): 19 found - 19 modified | TOTAL: 54 pass 2 (--): 0 found - 19 modified | TOTAL: 54 pass 1 (-+): 22 found - 22 modified | TOTAL: 76 pass 2 (-+): 0 found - 22 modified | TOTAL: 76 Iteration Number : 4 pass 1 (xy+): 7 found - 7 modified | TOTAL: 7 pass 2 (xy+): 0 found - 7 modified | TOTAL: 7 pass 1 (xy-): 6 found - 6 modified | TOTAL: 13 pass 2 (xy-): 0 found - 6 modified | TOTAL: 13 pass 1 (yz+): 6 found - 6 modified | TOTAL: 19 pass 2 (yz+): 0 found - 6 modified | TOTAL: 19 pass 1 (yz-): 7 found - 7 modified | TOTAL: 26 pass 2 (yz-): 0 found - 7 modified | TOTAL: 26 pass 1 (xz+): 5 found - 5 modified | TOTAL: 31 pass 2 (xz+): 0 found - 5 modified | TOTAL: 31 pass 1 (xz-): 2 found - 2 modified | TOTAL: 33 pass 2 (xz-): 0 found - 2 modified | TOTAL: 33 Iteration Number : 4 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 4 pass 1 (++): 3 found - 3 modified | TOTAL: 3 pass 2 (++): 0 found - 3 modified | TOTAL: 3 pass 1 (+-): 2 found - 2 modified | TOTAL: 5 pass 2 (+-): 0 found - 2 modified | TOTAL: 5 pass 1 (--): 7 found - 7 modified | TOTAL: 12 pass 2 (--): 0 found - 7 modified | TOTAL: 12 pass 1 (-+): 2 found - 2 modified | TOTAL: 14 pass 2 (-+): 0 found - 2 modified | TOTAL: 14 Iteration Number : 5 pass 1 (xy+): 3 found - 3 modified | TOTAL: 3 pass 2 (xy+): 0 found - 3 modified | TOTAL: 3 pass 1 (xy-): 2 found - 2 modified | TOTAL: 5 pass 2 (xy-): 0 found - 2 modified | TOTAL: 5 pass 1 (yz+): 1 found - 1 modified | TOTAL: 6 pass 2 (yz+): 0 found - 1 modified | TOTAL: 6 pass 1 (yz-): 3 found - 3 modified | TOTAL: 9 pass 2 (yz-): 0 found - 3 modified | TOTAL: 9 pass 1 (xz+): 0 found - 0 modified | TOTAL: 9 pass 1 (xz-): 0 found - 0 modified | TOTAL: 9 Iteration Number : 5 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 5 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 3 found - 3 modified | TOTAL: 5 pass 2 (--): 0 found - 3 modified | TOTAL: 5 pass 1 (-+): 0 found - 0 modified | TOTAL: 5 Iteration Number : 6 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 1 found - 1 modified | TOTAL: 1 pass 2 (yz+): 0 found - 1 modified | TOTAL: 1 pass 1 (yz-): 0 found - 0 modified | TOTAL: 1 pass 1 (xz+): 0 found - 0 modified | TOTAL: 1 pass 1 (xz-): 1 found - 1 modified | TOTAL: 2 pass 2 (xz-): 0 found - 1 modified | TOTAL: 2 Iteration Number : 6 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 6 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 2 found - 2 modified | TOTAL: 2 pass 2 (-+): 0 found - 2 modified | TOTAL: 2 Iteration Number : 7 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 7 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 7 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 8981 (out of 560363: 1.602711) binarizing input wm segmentation... Ambiguous edge configurations... mri_pretess done #-------------------------------------------- #@# Fill Wed Feb 3 11:24:21 PST 2021 /home/bdl/freesurfer/subjects/SD06/mri mri_fill -a ../scripts/ponscc.cut.log -xform transforms/talairach.lta -segmentation aseg.auto_noCCseg.mgz wm.mgz filled.mgz logging cutting plane coordinates to ../scripts/ponscc.cut.log... INFO: Using transforms/talairach.lta and its offset for Talairach volume ... using segmentation aseg.auto_noCCseg.mgz... reading input volume...done. searching for cutting planes...voxel to talairach voxel transform 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20844; 0.00000 0.00000 0.00000 1.00000; voxel to talairach voxel transform 1.12991 0.00890 -0.08990 -4.66913; 0.02005 1.14554 0.44042 -69.77341; 0.07187 -0.37278 0.96941 42.20844; 0.00000 0.00000 0.00000 1.00000; reading segmented volume aseg.auto_noCCseg.mgz... Looking for area (min, max) = (350, 1400) area[0] = 233 (min = 350, max = 1400), aspect = 0.64 (min = 0.10, max = 0.75) need search nearby using seed (126, 140, 109), TAL = (2.0, -19.0, -12.0) talairach voxel to voxel transform 0.88002 0.01718 0.07380 2.19244; 0.00843 0.76068 -0.34480 67.66824; -0.06200 0.29124 0.89349 -17.68139; 0.00000 0.00000 0.00000 1.00000; segmentation indicates cc at (126, 140, 109) --> (2.0, -19.0, -12.0) done. writing output to filled.mgz... filling took 0.3 minutes talairach cc position changed to (2.00, -19.00, -12.00) Erasing brainstem...done. seed_search_size = 9, min_neighbors = 5 search rh wm seed point around talairach space:(20.00, -19.00, -12.00) SRC: (107.68, 137.49, 113.79) search lh wm seed point around talairach space (-16.00, -19.00, -12.00), SRC: (139.37, 137.79, 111.56) compute mri_fill using aseg Erasing Brain Stem and Cerebellum ... Define left and right masks using aseg: Building Voronoi diagram ... Using the Voronoi diagram to separate WM into two hemispheres ... Find the largest connected component for each hemisphere ... #-------------------------------------------- #@# Tessellate lh Wed Feb 3 11:24:38 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mri_pretess ../mri/filled.mgz 255 ../mri/norm.mgz ../mri/filled-pretess255.mgz Iteration Number : 1 pass 1 (xy+): 12 found - 12 modified | TOTAL: 12 pass 2 (xy+): 0 found - 12 modified | TOTAL: 12 pass 1 (xy-): 18 found - 18 modified | TOTAL: 30 pass 2 (xy-): 0 found - 18 modified | TOTAL: 30 pass 1 (yz+): 8 found - 8 modified | TOTAL: 38 pass 2 (yz+): 0 found - 8 modified | TOTAL: 38 pass 1 (yz-): 8 found - 8 modified | TOTAL: 46 pass 2 (yz-): 0 found - 8 modified | TOTAL: 46 pass 1 (xz+): 18 found - 18 modified | TOTAL: 64 pass 2 (xz+): 0 found - 18 modified | TOTAL: 64 pass 1 (xz-): 6 found - 6 modified | TOTAL: 70 pass 2 (xz-): 0 found - 6 modified | TOTAL: 70 Iteration Number : 1 pass 1 (+++): 9 found - 9 modified | TOTAL: 9 pass 2 (+++): 0 found - 9 modified | TOTAL: 9 pass 1 (+++): 2 found - 2 modified | TOTAL: 11 pass 2 (+++): 0 found - 2 modified | TOTAL: 11 pass 1 (+++): 0 found - 0 modified | TOTAL: 11 pass 1 (+++): 7 found - 7 modified | TOTAL: 18 pass 2 (+++): 0 found - 7 modified | TOTAL: 18 Iteration Number : 1 pass 1 (++): 6 found - 6 modified | TOTAL: 6 pass 2 (++): 0 found - 6 modified | TOTAL: 6 pass 1 (+-): 14 found - 14 modified | TOTAL: 20 pass 2 (+-): 0 found - 14 modified | TOTAL: 20 pass 1 (--): 10 found - 10 modified | TOTAL: 30 pass 2 (--): 0 found - 10 modified | TOTAL: 30 pass 1 (-+): 2 found - 2 modified | TOTAL: 32 pass 2 (-+): 0 found - 2 modified | TOTAL: 32 Iteration Number : 2 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 2 found - 2 modified | TOTAL: 2 pass 2 (xy-): 0 found - 2 modified | TOTAL: 2 pass 1 (yz+): 1 found - 1 modified | TOTAL: 3 pass 2 (yz+): 0 found - 1 modified | TOTAL: 3 pass 1 (yz-): 1 found - 1 modified | TOTAL: 4 pass 2 (yz-): 0 found - 1 modified | TOTAL: 4 pass 1 (xz+): 4 found - 4 modified | TOTAL: 8 pass 2 (xz+): 0 found - 4 modified | TOTAL: 8 pass 1 (xz-): 0 found - 0 modified | TOTAL: 8 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 2 found - 2 modified | TOTAL: 2 pass 2 (--): 0 found - 2 modified | TOTAL: 2 pass 1 (-+): 0 found - 0 modified | TOTAL: 2 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 130 (out of 305204: 0.042594) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess255.mgz 255 ../surf/lh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 2969 vertices, 3192 faces slice 50: 11264 vertices, 11770 faces slice 60: 22292 vertices, 22944 faces slice 70: 34133 vertices, 35018 faces slice 80: 48593 vertices, 49755 faces slice 90: 63673 vertices, 65031 faces slice 100: 77867 vertices, 79321 faces slice 110: 92062 vertices, 93738 faces slice 120: 104872 vertices, 106661 faces slice 130: 116520 vertices, 118465 faces slice 140: 128027 vertices, 130148 faces slice 150: 140236 vertices, 142632 faces slice 160: 149944 vertices, 152417 faces slice 170: 157898 vertices, 160450 faces slice 180: 164495 vertices, 167044 faces slice 190: 166800 vertices, 169230 faces slice 200: 166800 vertices, 169230 faces slice 210: 166800 vertices, 169230 faces slice 220: 166800 vertices, 169230 faces slice 230: 166800 vertices, 169230 faces slice 240: 166800 vertices, 169230 faces slice 250: 166800 vertices, 169230 faces using the conformed surface RAS to save vertex points... writing ../surf/lh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess255.mgz mris_extract_main_component ../surf/lh.orig.nofix ../surf/lh.orig.nofix counting number of connected components... 166800 voxel in cpt #1: X=-2430 [v=166800,e=507690,f=338460] located at (-20.988495, -22.832842, 11.340725) For the whole surface: X=-2430 [v=166800,e=507690,f=338460] One single component has been found nothing to do done #-------------------------------------------- #@# Tessellate rh Wed Feb 3 11:24:41 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mri_pretess ../mri/filled.mgz 127 ../mri/norm.mgz ../mri/filled-pretess127.mgz Iteration Number : 1 pass 1 (xy+): 12 found - 12 modified | TOTAL: 12 pass 2 (xy+): 0 found - 12 modified | TOTAL: 12 pass 1 (xy-): 11 found - 11 modified | TOTAL: 23 pass 2 (xy-): 0 found - 11 modified | TOTAL: 23 pass 1 (yz+): 9 found - 9 modified | TOTAL: 32 pass 2 (yz+): 0 found - 9 modified | TOTAL: 32 pass 1 (yz-): 12 found - 12 modified | TOTAL: 44 pass 2 (yz-): 0 found - 12 modified | TOTAL: 44 pass 1 (xz+): 9 found - 9 modified | TOTAL: 53 pass 2 (xz+): 0 found - 9 modified | TOTAL: 53 pass 1 (xz-): 7 found - 7 modified | TOTAL: 60 pass 2 (xz-): 0 found - 7 modified | TOTAL: 60 Iteration Number : 1 pass 1 (+++): 2 found - 2 modified | TOTAL: 2 pass 2 (+++): 0 found - 2 modified | TOTAL: 2 pass 1 (+++): 2 found - 2 modified | TOTAL: 4 pass 2 (+++): 0 found - 2 modified | TOTAL: 4 pass 1 (+++): 3 found - 3 modified | TOTAL: 7 pass 2 (+++): 0 found - 3 modified | TOTAL: 7 pass 1 (+++): 0 found - 0 modified | TOTAL: 7 Iteration Number : 1 pass 1 (++): 9 found - 9 modified | TOTAL: 9 pass 2 (++): 0 found - 9 modified | TOTAL: 9 pass 1 (+-): 2 found - 2 modified | TOTAL: 11 pass 2 (+-): 0 found - 2 modified | TOTAL: 11 pass 1 (--): 5 found - 5 modified | TOTAL: 16 pass 2 (--): 0 found - 5 modified | TOTAL: 16 pass 1 (-+): 5 found - 5 modified | TOTAL: 21 pass 2 (-+): 0 found - 5 modified | TOTAL: 21 Iteration Number : 2 pass 1 (xy+): 1 found - 1 modified | TOTAL: 1 pass 2 (xy+): 0 found - 1 modified | TOTAL: 1 pass 1 (xy-): 0 found - 0 modified | TOTAL: 1 pass 1 (yz+): 1 found - 1 modified | TOTAL: 2 pass 2 (yz+): 0 found - 1 modified | TOTAL: 2 pass 1 (yz-): 1 found - 1 modified | TOTAL: 3 pass 2 (yz-): 0 found - 1 modified | TOTAL: 3 pass 1 (xz+): 0 found - 0 modified | TOTAL: 3 pass 1 (xz-): 1 found - 1 modified | TOTAL: 4 pass 2 (xz-): 0 found - 1 modified | TOTAL: 4 Iteration Number : 2 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 2 pass 1 (++): 2 found - 2 modified | TOTAL: 2 pass 2 (++): 0 found - 2 modified | TOTAL: 2 pass 1 (+-): 0 found - 0 modified | TOTAL: 2 pass 1 (--): 1 found - 1 modified | TOTAL: 3 pass 2 (--): 0 found - 1 modified | TOTAL: 3 pass 1 (-+): 1 found - 1 modified | TOTAL: 4 pass 2 (-+): 0 found - 1 modified | TOTAL: 4 Iteration Number : 3 pass 1 (xy+): 0 found - 0 modified | TOTAL: 0 pass 1 (xy-): 0 found - 0 modified | TOTAL: 0 pass 1 (yz+): 0 found - 0 modified | TOTAL: 0 pass 1 (yz-): 0 found - 0 modified | TOTAL: 0 pass 1 (xz+): 0 found - 0 modified | TOTAL: 0 pass 1 (xz-): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 pass 1 (+++): 0 found - 0 modified | TOTAL: 0 Iteration Number : 3 pass 1 (++): 0 found - 0 modified | TOTAL: 0 pass 1 (+-): 0 found - 0 modified | TOTAL: 0 pass 1 (--): 0 found - 0 modified | TOTAL: 0 pass 1 (-+): 0 found - 0 modified | TOTAL: 0 Total Number of Modified Voxels = 96 (out of 258218: 0.037178) Ambiguous edge configurations... mri_pretess done mri_tessellate ../mri/filled-pretess127.mgz 127 ../surf/rh.orig.nofix $Id: mri_tessellate.c,v 1.38.2.1 2016/07/26 18:46:38 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ slice 40: 1160 vertices, 1295 faces slice 50: 8217 vertices, 8750 faces slice 60: 21341 vertices, 22386 faces slice 70: 34962 vertices, 36154 faces slice 80: 48942 vertices, 50343 faces slice 90: 60251 vertices, 61779 faces slice 100: 71254 vertices, 72857 faces slice 110: 83243 vertices, 85058 faces slice 120: 95014 vertices, 96975 faces slice 130: 108862 vertices, 111154 faces slice 140: 123347 vertices, 125856 faces slice 150: 135750 vertices, 138412 faces slice 160: 147714 vertices, 150595 faces slice 170: 157768 vertices, 160755 faces slice 180: 165180 vertices, 168180 faces slice 190: 167268 vertices, 170072 faces slice 200: 167268 vertices, 170072 faces slice 210: 167268 vertices, 170072 faces slice 220: 167268 vertices, 170072 faces slice 230: 167268 vertices, 170072 faces slice 240: 167268 vertices, 170072 faces slice 250: 167268 vertices, 170072 faces using the conformed surface RAS to save vertex points... writing ../surf/rh.orig.nofix using vox2ras matrix: -1.00000 0.00000 0.00000 128.00000; 0.00000 0.00000 1.00000 -128.00000; 0.00000 -1.00000 0.00000 128.00000; 0.00000 0.00000 0.00000 1.00000; rm -f ../mri/filled-pretess127.mgz mris_extract_main_component ../surf/rh.orig.nofix ../surf/rh.orig.nofix counting number of connected components... 167238 voxel in cpt #1: X=-2808 [v=167238,e=510138,f=340092] located at (29.388817, -19.509825, 11.721546) 12 voxel in cpt #2: X=2 [v=12,e=30,f=20] located at (11.000000, -65.500000, 2.000000) 18 voxel in cpt #3: X=2 [v=18,e=48,f=32] located at (10.000000, -49.500000, 20.500000) For the whole surface: X=-2804 [v=167268,e=510216,f=340144] 3 components have been found keeping component #1 with 167238 vertices done #-------------------------------------------- #@# Smooth1 lh Wed Feb 3 11:24:44 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_smooth -nw -seed 1234 ../surf/lh.orig.nofix ../surf/lh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Smooth1 rh Wed Feb 3 11:24:47 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_smooth -nw -seed 1234 ../surf/rh.orig.nofix ../surf/rh.smoothwm.nofix setting seed for random number generator to 1234 smoothing surface tessellation for 10 iterations... smoothing complete - recomputing first and second fundamental forms... #-------------------------------------------- #@# Inflation1 lh Wed Feb 3 11:24:50 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_inflate -no-save-sulc ../surf/lh.smoothwm.nofix ../surf/lh.inflated.nofix Not saving sulc Reading ../surf/lh.smoothwm.nofix avg radius = 45.5 mm, total surface area = 70089 mm^2 writing inflated surface to ../surf/lh.inflated.nofix inflation took 0.4 minutes step 000: RMS=0.275 (target=0.015) step 005: RMS=0.226 (target=0.015) step 010: RMS=0.208 (target=0.015) step 015: RMS=0.207 (target=0.015) step 020: RMS=0.203 (target=0.015) step 025: RMS=0.197 (target=0.015) step 030: RMS=0.191 (target=0.015) step 035: RMS=0.187 (target=0.015) step 040: RMS=0.183 (target=0.015) step 045: RMS=0.179 (target=0.015) step 050: RMS=0.177 (target=0.015) step 055: RMS=0.178 (target=0.015) step 060: RMS=0.179 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 21.992947 mris_inflate stimesec 0.039987 mris_inflate ru_maxrss 226720 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 54946 mris_inflate ru_majflt 8 mris_inflate ru_nswap 0 mris_inflate ru_inblock 1864 mris_inflate ru_oublock 11848 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 9 mris_inflate ru_nivcsw 50 #-------------------------------------------- #@# Inflation1 rh Wed Feb 3 11:25:12 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_inflate -no-save-sulc ../surf/rh.smoothwm.nofix ../surf/rh.inflated.nofix Not saving sulc Reading ../surf/rh.smoothwm.nofix avg radius = 45.6 mm, total surface area = 69229 mm^2 writing inflated surface to ../surf/rh.inflated.nofix inflation took 0.4 minutes step 000: RMS=0.286 (target=0.015) step 005: RMS=0.236 (target=0.015) step 010: RMS=0.219 (target=0.015) step 015: RMS=0.212 (target=0.015) step 020: RMS=0.206 (target=0.015) step 025: RMS=0.201 (target=0.015) step 030: RMS=0.196 (target=0.015) step 035: RMS=0.189 (target=0.015) step 040: RMS=0.186 (target=0.015) step 045: RMS=0.183 (target=0.015) step 050: RMS=0.181 (target=0.015) step 055: RMS=0.180 (target=0.015) step 060: RMS=0.179 (target=0.015) inflation complete. Not saving sulc mris_inflate utimesec 22.174972 mris_inflate stimesec 0.043997 mris_inflate ru_maxrss 228744 mris_inflate ru_ixrss 0 mris_inflate ru_idrss 0 mris_inflate ru_isrss 0 mris_inflate ru_minflt 55413 mris_inflate ru_majflt 0 mris_inflate ru_nswap 0 mris_inflate ru_inblock 0 mris_inflate ru_oublock 11896 mris_inflate ru_msgsnd 0 mris_inflate ru_msgrcv 0 mris_inflate ru_nsignals 0 mris_inflate ru_nvcsw 0 mris_inflate ru_nivcsw 55 #-------------------------------------------- #@# QSphere lh Wed Feb 3 11:25:35 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_sphere -q -seed 1234 ../surf/lh.inflated.nofix ../surf/lh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.88 +- 0.76 (0.00-->10.19) (max @ vno 119717 --> 119728) face area 0.02 +- 0.05 (-0.35-->0.95) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.341... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=176.493, avgs=0 005/300: dt: 0.9000, rms radial error=176.239, avgs=0 010/300: dt: 0.9000, rms radial error=175.690, avgs=0 015/300: dt: 0.9000, rms radial error=174.964, avgs=0 020/300: dt: 0.9000, rms radial error=174.120, avgs=0 025/300: dt: 0.9000, rms radial error=173.217, avgs=0 030/300: dt: 0.9000, rms radial error=172.281, avgs=0 035/300: dt: 0.9000, rms radial error=171.328, avgs=0 040/300: dt: 0.9000, rms radial error=170.367, avgs=0 045/300: dt: 0.9000, rms radial error=169.405, avgs=0 050/300: dt: 0.9000, rms radial error=168.444, avgs=0 055/300: dt: 0.9000, rms radial error=167.486, avgs=0 060/300: dt: 0.9000, rms radial error=166.538, avgs=0 065/300: dt: 0.9000, rms radial error=165.595, avgs=0 070/300: dt: 0.9000, rms radial error=164.658, avgs=0 075/300: dt: 0.9000, rms radial error=163.728, avgs=0 080/300: dt: 0.9000, rms radial error=162.803, avgs=0 085/300: dt: 0.9000, rms radial error=161.883, avgs=0 090/300: dt: 0.9000, rms radial error=160.969, avgs=0 095/300: dt: 0.9000, rms radial error=160.060, avgs=0 100/300: dt: 0.9000, rms radial error=159.156, avgs=0 105/300: dt: 0.9000, rms radial error=158.256, avgs=0 110/300: dt: 0.9000, rms radial error=157.362, avgs=0 115/300: dt: 0.9000, rms radial error=156.473, avgs=0 120/300: dt: 0.9000, rms radial error=155.589, avgs=0 125/300: dt: 0.9000, rms radial error=154.710, avgs=0 130/300: dt: 0.9000, rms radial error=153.830, avgs=0 135/300: dt: 0.9000, rms radial error=152.967, avgs=0 140/300: dt: 0.9000, rms radial error=152.101, avgs=0 145/300: dt: 0.9000, rms radial error=151.238, avgs=0 150/300: dt: 0.9000, rms radial error=150.372, avgs=0 155/300: dt: 0.9000, rms radial error=149.525, avgs=0 160/300: dt: 0.9000, rms radial error=148.684, avgs=0 165/300: dt: 0.9000, rms radial error=147.833, avgs=0 170/300: dt: 0.9000, rms radial error=147.005, avgs=0 175/300: dt: 0.9000, rms radial error=146.167, avgs=0 180/300: dt: 0.9000, rms radial error=145.349, avgs=0 185/300: dt: 0.9000, rms radial error=144.526, avgs=0 190/300: dt: 0.9000, rms radial error=143.712, avgs=0 195/300: dt: 0.9000, rms radial error=142.904, avgs=0 200/300: dt: 0.9000, rms radial error=142.099, avgs=0 205/300: dt: 0.9000, rms radial error=141.298, avgs=0 210/300: dt: 0.9000, rms radial error=140.500, avgs=0 215/300: dt: 0.9000, rms radial error=139.706, avgs=0 220/300: dt: 0.9000, rms radial error=138.917, avgs=0 225/300: dt: 0.9000, rms radial error=138.132, avgs=0 230/300: dt: 0.9000, rms radial error=137.351, avgs=0 235/300: dt: 0.9000, rms radial error=136.575, avgs=0 240/300: dt: 0.9000, rms radial error=135.804, avgs=0 245/300: dt: 0.9000, rms radial error=135.037, avgs=0 250/300: dt: 0.9000, rms radial error=134.275, avgs=0 255/300: dt: 0.9000, rms radial error=133.517, avgs=0 260/300: dt: 0.9000, rms radial error=132.759, avgs=0 265/300: dt: 0.9000, rms radial error=132.003, avgs=0 270/300: dt: 0.9000, rms radial error=131.260, avgs=0 275/300: dt: 0.9000, rms radial error=130.525, avgs=0 280/300: dt: 0.9000, rms radial error=129.789, avgs=0 285/300: dt: 0.9000, rms radial error=129.057, avgs=0 290/300: dt: 0.9000, rms radial error=128.328, avgs=0 295/300: dt: 0.9000, rms radial error=127.603, avgs=0 300/300: dt: 0.9000, rms radial error=126.882, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 20465.46 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00018 epoch 2 (K=40.0), pass 1, starting sse = 4127.33 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00043 epoch 3 (K=160.0), pass 1, starting sse = 825.57 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.03/10 = 0.00311 epoch 4 (K=640.0), pass 1, starting sse = 236.56 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.12/14 = 0.00838 final distance error %33.14 writing spherical brain to ../surf/lh.qsphere.nofix spherical transformation took 0.04 hours mris_sphere utimesec 133.885364 mris_sphere stimesec 0.059997 mris_sphere ru_maxrss 226920 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 54951 mris_sphere ru_majflt 9 mris_sphere ru_nswap 0 mris_sphere ru_inblock 1944 mris_sphere ru_oublock 11848 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 10 mris_sphere ru_nivcsw 1482 FSRUNTIME@ mris_sphere 0.0372 hours 1 threads #-------------------------------------------- #@# QSphere rh Wed Feb 3 11:27:49 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts mris_sphere -q -seed 1234 ../surf/rh.inflated.nofix ../surf/rh.qsphere.nofix doing quick spherical unfolding. setting seed for random number genererator to 1234 $Id: mris_sphere.c,v 1.61 2016/01/20 23:42:15 greve Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ reading original vertex positions... unfolding cortex into spherical form... surface projected - minimizing metric distortion... vertex spacing 0.87 +- 0.77 (0.00-->13.00) (max @ vno 84182 --> 84201) face area 0.02 +- 0.05 (-0.73-->1.27) == Number of threads available to mris_sphere for OpenMP = 1 == scaling brain by 0.342... inflating to sphere (rms error < 2.00) 000: dt: 0.0000, rms radial error=175.586, avgs=0 005/300: dt: 0.9000, rms radial error=175.323, avgs=0 010/300: dt: 0.9000, rms radial error=174.759, avgs=0 015/300: dt: 0.9000, rms radial error=174.017, avgs=0 020/300: dt: 0.9000, rms radial error=173.170, avgs=0 025/300: dt: 0.9000, rms radial error=172.262, avgs=0 030/300: dt: 0.9000, rms radial error=171.320, avgs=0 035/300: dt: 0.9000, rms radial error=170.363, avgs=0 040/300: dt: 0.9000, rms radial error=169.398, avgs=0 045/300: dt: 0.9000, rms radial error=168.438, avgs=0 050/300: dt: 0.9000, rms radial error=167.480, avgs=0 055/300: dt: 0.9000, rms radial error=166.533, avgs=0 060/300: dt: 0.9000, rms radial error=165.594, avgs=0 065/300: dt: 0.9000, rms radial error=164.660, avgs=0 070/300: dt: 0.9000, rms radial error=163.732, avgs=0 075/300: dt: 0.9000, rms radial error=162.809, avgs=0 080/300: dt: 0.9000, rms radial error=161.890, avgs=0 085/300: dt: 0.9000, rms radial error=160.976, avgs=0 090/300: dt: 0.9000, rms radial error=160.067, avgs=0 095/300: dt: 0.9000, rms radial error=159.163, avgs=0 100/300: dt: 0.9000, rms radial error=158.265, avgs=0 105/300: dt: 0.9000, rms radial error=157.370, avgs=0 110/300: dt: 0.9000, rms radial error=156.482, avgs=0 115/300: dt: 0.9000, rms radial error=155.598, avgs=0 120/300: dt: 0.9000, rms radial error=154.720, avgs=0 125/300: dt: 0.9000, rms radial error=153.846, avgs=0 130/300: dt: 0.9000, rms radial error=152.978, avgs=0 135/300: dt: 0.9000, rms radial error=152.115, avgs=0 140/300: dt: 0.9000, rms radial error=151.256, avgs=0 145/300: dt: 0.9000, rms radial error=150.402, avgs=0 150/300: dt: 0.9000, rms radial error=149.552, avgs=0 155/300: dt: 0.9000, rms radial error=148.707, avgs=0 160/300: dt: 0.9000, rms radial error=147.866, avgs=0 165/300: dt: 0.9000, rms radial error=147.030, avgs=0 170/300: dt: 0.9000, rms radial error=146.199, avgs=0 175/300: dt: 0.9000, rms radial error=145.372, avgs=0 180/300: dt: 0.9000, rms radial error=144.549, avgs=0 185/300: dt: 0.9000, rms radial error=143.731, avgs=0 190/300: dt: 0.9000, rms radial error=142.918, avgs=0 195/300: dt: 0.9000, rms radial error=142.108, avgs=0 200/300: dt: 0.9000, rms radial error=141.304, avgs=0 205/300: dt: 0.9000, rms radial error=140.504, avgs=0 210/300: dt: 0.9000, rms radial error=139.708, avgs=0 215/300: dt: 0.9000, rms radial error=138.917, avgs=0 220/300: dt: 0.9000, rms radial error=138.130, avgs=0 225/300: dt: 0.9000, rms radial error=137.348, avgs=0 230/300: dt: 0.9000, rms radial error=136.571, avgs=0 235/300: dt: 0.9000, rms radial error=135.797, avgs=0 240/300: dt: 0.9000, rms radial error=135.028, avgs=0 245/300: dt: 0.9000, rms radial error=134.263, avgs=0 250/300: dt: 0.9000, rms radial error=133.503, avgs=0 255/300: dt: 0.9000, rms radial error=132.746, avgs=0 260/300: dt: 0.9000, rms radial error=131.994, avgs=0 265/300: dt: 0.9000, rms radial error=131.246, avgs=0 270/300: dt: 0.9000, rms radial error=130.502, avgs=0 275/300: dt: 0.9000, rms radial error=129.763, avgs=0 280/300: dt: 0.9000, rms radial error=129.028, avgs=0 285/300: dt: 0.9000, rms radial error=128.297, avgs=0 290/300: dt: 0.9000, rms radial error=127.569, avgs=0 295/300: dt: 0.9000, rms radial error=126.847, avgs=0 300/300: dt: 0.9000, rms radial error=126.128, avgs=0 spherical inflation complete. epoch 1 (K=10.0), pass 1, starting sse = 20642.19 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00010 epoch 2 (K=40.0), pass 1, starting sse = 4226.33 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.00/10 = 0.00031 epoch 3 (K=160.0), pass 1, starting sse = 854.04 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.02/10 = 0.00231 epoch 4 (K=640.0), pass 1, starting sse = 239.52 taking momentum steps... taking momentum steps... taking momentum steps... pass 1 complete, delta sse/iter = 0.11/13 = 0.00879 final distance error %32.36 writing spherical brain to ../surf/rh.qsphere.nofix spherical transformation took 0.04 hours mris_sphere utimesec 132.379654 mris_sphere stimesec 0.047998 mris_sphere ru_maxrss 228864 mris_sphere ru_ixrss 0 mris_sphere ru_idrss 0 mris_sphere ru_isrss 0 mris_sphere ru_minflt 55417 mris_sphere ru_majflt 0 mris_sphere ru_nswap 0 mris_sphere ru_inblock 0 mris_sphere ru_oublock 11896 mris_sphere ru_msgsnd 0 mris_sphere ru_msgrcv 0 mris_sphere ru_nsignals 0 mris_sphere ru_nvcsw 0 mris_sphere ru_nivcsw 259 FSRUNTIME@ mris_sphere 0.0368 hours 1 threads #-------------------------------------------- #@# Fix Topology Copy lh Wed Feb 3 11:30:01 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts cp ../surf/lh.orig.nofix ../surf/lh.orig cp ../surf/lh.inflated.nofix ../surf/lh.inflated #-------------------------------------------- #@# Fix Topology Copy rh Wed Feb 3 11:30:01 PST 2021 /home/bdl/freesurfer/subjects/SD06/scripts cp ../surf/rh.orig.nofix ../surf/rh.orig cp ../surf/rh.inflated.nofix ../surf/rh.inflated #@# Fix Topology lh Wed Feb 3 11:30:01 PST 2021 mris_fix_topology -rusage /home/bdl/freesurfer/subjects/SD06/touch/rusage.mris_fix_topology.lh.dat -mgz -sphere qsphere.nofix -ga -seed 1234 SD06 lh reading spherical homeomorphism from 'qsphere.nofix' using genetic algorithm with optimized parameters setting seed for random number genererator to 1234 ************************************************************* Topology Correction Parameters retessellation mode: genetic search number of patches/generation : 10 number of generations : 10 surface mri loglikelihood coefficient : 1.0 volume mri loglikelihood coefficient : 10.0 normal dot loglikelihood coefficient : 1.0 quadratic curvature loglikelihood coefficient : 1.0 volume resolution : 2 eliminate vertices during search : 1 initial patch selection : 1 select all defect vertices : 0 ordering dependant retessellation: 0 use precomputed edge table : 0 smooth retessellated patch : 2 match retessellated patch : 1 verbose mode : 0 ************************************************************* INFO: assuming .mgz format $Id: mris_fix_topology.c,v 1.50.2.1 2016/10/27 22:25:58 zkaufman Exp $ $Id: mrisurf.c,v 1.781.2.6 2016/12/27 16:47:14 zkaufman Exp $ before topology correction, eno=-2430 (nv=166800, nf=338460, ne=507690, g=1216) using quasi-homeomorphic spherical map to tessellate cortical surface... Correction of the Topology Finding true center and radius of Spherical Surface...done Surface centered at (0,0,0) with radius 100.0 in 11 iterations marking ambiguous vertices... 142715 ambiguous faces found in tessellation segmenting defects... 300 defects found, arbitrating ambiguous regions... analyzing neighboring defects... -merging segment 5 into 3 -merging segment 41 into 4 -merging segment 18 into 4 -merging segment 30 into 19 -merging segment 61 into 19 -merging segment 49 into 25 -merging segment 54 into 25 -merging segment 55 into 25 -merging segment 64 into 25 -merging segment 96 into 25 -merging segment 110 into 25 -merging segment 115 into 25 -merging segment 147 into 25 -merging segment 73 into 25 -merging segment 81 into 25 -merging segment 119 into 25 -merging segment 128 into 25 -merging segment 146 into 25 -merging segment 180 into 25 -merging segment 195 into 25 -merging segment 206 into 25 -merging segment 222 into 25 -merging segment 229 into 25 -merging segment 254 into 25 -merging segment 113 into 25 -merging segment 131 into 25 -merging segment 262 into 25 -merging segment 66 into 28 -merging segment 60 into 32 -merging segment 77 into 32 -merging segment 97 into 52 -merging segment 106 into 52 -merging segment 69 into 65 -merging segment 78 into 65 -merging segment 88 into 65 -merging segment 80 into 71 -merging segment 86 into 75 -merging segment 120 into 85 -merging segment 109 into 104 -merging segment 47 into 117 -merging segment 133 into 123 -merging segment 52 into 124 -merging segment 158 into 142 -merging segment 154 into 142 -merging segment 162 into 155 -merging segment 185 into 163 -merging segment 196 into 187 -merging segment 203 into 193 -merging segment 201 into 197 -merging segment 205 into 204 -merging segment 25 into 208 -merging segment 234 into 214 -merging segment 220 into 216 -merging segment 221 into 216 -merging segment 225 into 216 -merging segment 231 into 223 -merging segment 224 into 223 -merging segment 261 into 238 -merging segment 208 into 240 -merging segment 245 into 242 -merging segment 244 into 243 -merging segment 240 into 252 -merging segment 258 into 252 -merging segment 259 into 252 -merging segment 271 into 252 -merging segment 277 into 252 -merging segment 283 into 252 -merging segment 272 into 252 -merging segment 294 into 252 -merging segment 274 into 252 -merging segment 297 into 252 -merging segment 295 into 252 -merging segment 275 into 264 -merging segment 252 into 285 -merging segment 291 into 292 225 defects to be corrected 0 vertices coincident reading input surface /home/bdl/freesurfer/subjects/SD06/surf/lh.qsphere.nofix... reading brain volume from brain... reading wm segmentation from wm... Computing Initial Surface Statistics -face loglikelihood: -8.8832 (-4.4416) -vertex loglikelihood: -7.6779 (-3.8390) -normal dot loglikelihood: -3.5056 (-3.5056) -quad curv loglikelihood: -6.5613 (-3.2807) Total Loglikelihood : -26.6281 CORRECTING DEFECT 0 (vertices=5, convex hull=20, v0=1) After retessellation of defect 0 (v0=1), euler #=-126 (86297,239745,153322) : difference with theory (-222) = -96 CORRECTING DEFECT 1 (vertices=274, convex hull=101, v0=349) After retessellation of defect 1 (v0=349), euler #=-125 (86309,239839,153405) : difference with theory (-221) = -96 CORRECTING DEFECT 2 (vertices=73, convex hull=83, v0=421) After retessellation of defect 2 (v0=421), euler #=-124 (86327,239926,153475) : difference with theory (-220) = -96 CORRECTING DEFECT 3 (vertices=38, convex hull=100, v0=553) After retessellation of defect 3 (v0=553), euler #=-122 (86338,239991,153531) : difference with theory (-219) = -97 CORRECTING DEFECT 4 (vertices=2268, convex hull=587, v0=607) XL defect detected... After retessellation of defect 4 (v0=607), euler #=-121 (86838,241808,154849) : difference with theory (-218) = -97 CORRECTING DEFECT 5 (vertices=38, convex hull=12, v0=1239) After retessellation of defect 5 (v0=1239), euler #=-120 (86840,241815,154855) : difference with theory (-217) = -97 CORRECTING DEFECT 6 (vertices=84, convex hull=52, v0=1482) After retessellation of defect 6 (v0=1482), euler #=-119 (86855,241876,154902) : difference with theory (-216) = -97 CORRECTING DEFECT 7 (vertices=145, convex hull=116, v0=1679) After retessellation of defect 7 (v0=1679), euler #=-118 (86888,242027,155021) : difference with theory (-215) = -97 CORRECTING DEFECT 8 (vertices=31, convex hull=32, v0=1708) After retessellation of defect 8 (v0=1708), euler #=-117 (86891,242051,155043) : difference with theory (-214) = -97 CORRECTING DEFECT 9 (vertices=16, convex hull=27, v0=2094) After retessellation of defect 9 (v0=2094), euler #=-116 (86893,242065,155056) : difference with theory (-213) = -97 CORRECTING DEFECT 10 (vertices=160, convex hull=70, v0=2098) After retessellation of defect 10 (v0=2098), euler #=-115 (86905,242134,155114) : difference with theory (-212) = -97 CORRECTING DEFECT 11 (vertices=81, convex hull=104, v0=2372) After retessellation of defect 11 (v0=2372), euler #=-115 (86946,242315,155254) : difference with theory (-211) = -96 CORRECTING DEFECT 12 (vertices=236, convex hull=208, v0=2541) After retessellation of defect 12 (v0=2541), euler #=-115 (87063,242799,155621) : difference with theory (-210) = -95 CORRECTING DEFECT 13 (vertices=111, convex hull=125, v0=2623) After retessellation of defect 13 (v0=2623), euler #=-115 (87099,242960,155746) : difference with theory (-209) = -94 CORRECTING DEFECT 14 (vertices=56, convex hull=30, v0=2941) After retessellation of defect 14 (v0=2941), euler #=-114 (87103,242980,155763) : difference with theory (-208) = -94 CORRECTING DEFECT 15 (vertices=19, convex hull=45, v0=2980) After retessellation of defect 15 (v0=2980), euler #=-113 (87112,243022,155797) : difference with theory (-207) = -94 CORRECTING DEFECT 16 (vertices=6, convex hull=13, v0=3294) After retessellation of defect 16 (v0=3294), euler #=-112 (87113,243027,155802) : difference with theory (-206) = -94 CORRECTING DEFECT 17 (vertices=438, convex hull=366, v0=4995) After retessellation of defect 17 (v0=4995), euler #=-109 (87312,243802,156381) : difference with theory (-205) = -96 CORRECTING DEFECT 18 (vertices=664, convex hull=326, v0=5053) After retessellation of defect 18 (v0=5053), euler #=-109 (87463,244431,156859) : difference with theory (-204) = -95 CORRECTING DEFECT 19 (vertices=21, convex hull=34, v0=6022) After retessellation of defect 19 (v0=6022), euler #=-108 (87466,244455,156881) : difference with theory (-203) = -95 CORRECTING DEFECT 20 (vertices=9, convex hull=11, v0=6205) After retessellation of defect 20 (v0=6205), euler #=-107 (87467,244460,156886) : difference with theory (-202) = -95 CORRECTING DEFECT 21 (vertices=26, convex hull=49, v0=6296) After retessellation of defect 21 (v0=6296), euler #=-106 (87473,244494,156915) : difference with theory (-201) = -95 CORRECTING DEFECT 22 (vertices=382, convex hull=189, v0=6331) After retessellation of defect 22 (v0=6331), euler #=-105 (87492,244638,157041) : difference with theory (-200) = -95 CORRECTING DEFECT 23 (vertices=17, convex hull=24, v0=6684) After retessellation of defect 23 (v0=6684), euler #=-104 (87494,244651,157053) : difference with theory (-199) = -95 CORRECTING DEFECT 24 (vertices=9, convex hull=15, v0=6708) After retessellation of defect 24 (v0=6708), euler #=-103 (87494,244654,157057) : difference with theory (-198) = -95 CORRECTING DEFECT 25 (vertices=1960, convex hull=488, v0=6852) XL defect detected... After retessellation of defect 25 (v0=6852), euler #=-103 (87823,245913,157987) : difference with theory (-197) = -94 CORRECTING DEFECT 26 (vertices=120, convex hull=81, v0=8347) After retessellation of defect 26 (v0=8347), euler #=-102 (87834,245978,158042) : difference with theory (-196) = -94 CORRECTING DEFECT 27 (vertices=21, convex hull=39, v0=10935) After retessellation of defect 27 (v0=10935), euler #=-101 (87836,245998,158061) : difference with theory (-195) = -94 CORRECTING DEFECT 28 (vertices=1972, convex hull=1016, v0=11266) XL defect detected... After retessellation of defect 28 (v0=11266), euler #=-105 (88217,247721,159399) : difference with theory (-194) = -89 CORRECTING DEFECT 29 (vertices=24, convex hull=15, v0=11446) After retessellation of defect 29 (v0=11446), euler #=-104 (88219,247730,159407) : difference with theory (-193) = -89 CORRECTING DEFECT 30 (vertices=147, convex hull=97, v0=12064) After retessellation of defect 30 (v0=12064), euler #=-103 (88255,247877,159519) : difference with theory (-192) = -89 CORRECTING DEFECT 31 (vertices=16, convex hull=25, v0=12524) After retessellation of defect 31 (v0=12524), euler #=-102 (88259,247897,159536) : difference with theory (-191) = -89 CORRECTING DEFECT 32 (vertices=9, convex hull=19, v0=12866) After retessellation of defect 32 (v0=12866), euler #=-101 (88259,247902,159542) : difference with theory (-190) = -89 CORRECTING DEFECT 33 (vertices=30, convex hull=21, v0=13743) After retessellation of defect 33 (v0=13743), euler #=-100 (88261,247914,159553) : difference with theory (-189) = -89 CORRECTING DEFECT 34 (vertices=6, convex hull=13, v0=13794) After retessellation of defect 34 (v0=13794), euler #=-99 (88262,247920,159559) : difference with theory (-188) = -89 CORRECTING DEFECT 35 (vertices=21, convex hull=47, v0=13803) After retessellation of defect 35 (v0=13803), euler #=-98 (88271,247964,159595) : difference with theory (-187) = -89 CORRECTING DEFECT 36 (vertices=420, convex hull=172, v0=14073) After retessellation of defect 36 (v0=14073), euler #=-98 (88398,248431,159935) : difference with theory (-186) = -88 CORRECTING DEFECT 37 (vertices=6, convex hull=35, v0=15609) After retessellation of defect 37 (v0=15609), euler #=-97 (88399,248445,159949) : difference with theory (-185) = -88 CORRECTING DEFECT 38 (vertices=29, convex hull=50, v0=15627) After retessellation of defect 38 (v0=15627), euler #=-96 (88410,248496,159990) : difference with theory (-184) = -88 CORRECTING DEFECT 39 (vertices=24, convex hull=16, v0=15868) After retessellation of defect 39 (v0=15868), euler #=-95 (88410,248500,159995) : difference with theory (-183) = -88 CORRECTING DEFECT 40 (vertices=18, convex hull=26, v0=17829) After retessellation of defect 40 (v0=17829), euler #=-94 (88412,248514,160008) : difference with theory (-182) = -88 CORRECTING DEFECT 41 (vertices=147, convex hull=122, v0=17995) After retessellation of defect 41 (v0=17995), euler #=-93 (88474,248757,160190) : difference with theory (-181) = -88 CORRECTING DEFECT 42 (vertices=43, convex hull=44, v0=18511) After retessellation of defect 42 (v0=18511), euler #=-92 (88488,248819,160239) : difference with theory (-180) = -88 CORRECTING DEFECT 43 (vertices=39, convex hull=53, v0=18813) After retessellation of defect 43 (v0=18813), euler #=-91 (88508,248899,160300) : difference with theory (-179) = -88 CORRECTING DEFECT 44 (vertices=9, convex hull=13, v0=18951) After retessellation of defect 44 (v0=18951), euler #=-90 (88508,248903,160305) : difference with theory (-178) = -88 CORRECTING DEFECT 45 (vertices=61, convex hull=25, v0=20452) After retessellation of defect 45 (v0=20452), euler #=-89 (88512,248922,160321) : difference with theory (-177) = -88 CORRECTING DEFECT 46 (vertices=501, convex hull=196, v0=21375) After retessellation of defect 46 (v0=21375), euler #=-88 (88542,249118,160488) : difference with theory (-176) = -88 CORRECTING DEFECT 47 (vertices=103, convex hull=87, v0=21440) After retessellation of defect 47 (v0=21440), euler #=-87 (88594,249315,160634) : difference with theory (-175) = -88 CORRECTING DEFECT 48 (vertices=53, convex hull=53, v0=22700) After retessellation of defect 48 (v0=22700), euler #=-86 (88601,249356,160669) : difference with theory (-174) = -88 CORRECTING DEFECT 49 (vertices=93, convex hull=79, v0=23126) After retessellation of defect 49 (v0=23126), euler #=-85 (88620,249446,160741) : difference with theory (-173) = -88 CORRECTING DEFECT 50 (vertices=8, convex hull=22, v0=25307) After retessellation of defect 50 (v0=25307), euler #=-84 (88621,249455,160750) : difference with theory (-172) = -88 CORRECTING DEFECT 51 (vertices=237, convex hull=149, v0=26305) After retessellation of defect 51 (v0=26305), euler #=-84 (88635,249569,160850) : difference with theory (-171) = -87 CORRECTING DEFECT 52 (vertices=127, convex hull=146, v0=27027) After retessellation of defect 52 (v0=27027), euler #=-81 (88686,249790,161023) : difference with theory (-170) = -89 CORRECTING DEFECT 53 (vertices=346, convex hull=188, v0=28614) After retessellation of defect 53 (v0=28614), euler #=-81 (88713,249965,161171) : difference with theory (-169) = -88 CORRECTING DEFECT 54 (vertices=33, convex hull=45, v0=28960) After retessellation of defect 54 (v0=28960), euler #=-80 (88728,250026,161218) : difference with theory (-168) = -88 CORRECTING DEFECT 55 (vertices=20, convex hull=39, v0=29670) After retessellation of defect 55 (v0=29670), euler #=-79 (88731,250048,161238) : difference with theory (-167) = -88 CORRECTING DEFECT 56 (vertices=81, convex hull=73, v0=30872) After retessellation of defect 56 (v0=30872), euler #=-77 (88757,250153,161319) : difference with theory (-166) = -89 CORRECTING DEFECT 57 (vertices=93, convex hull=120, v0=31253) After retessellation of defect 57 (v0=31253), euler #=-76 (88807,250354,161471) : difference with theory (-165) = -89 CORRECTING DEFECT 58 (vertices=82, convex hull=75, v0=32628) After retessellation of defect 58 (v0=32628), euler #=-75 (88816,250419,161528) : difference with theory (-164) = -89 CORRECTING DEFECT 59 (vertices=216, convex hull=223, v0=32766) After retessellation of defect 59 (v0=32766), euler #=-73 (88916,250833,161844) : difference with theory (-163) = -90 CORRECTING DEFECT 60 (vertices=26, convex hull=60, v0=32780) After retessellation of defect 60 (v0=32780), euler #=-72 (88931,250902,161899) : difference with theory (-162) = -90 CORRECTING DEFECT 61 (vertices=89, convex hull=133, v0=33658) After retessellation of defect 61 (v0=33658), euler #=-71 (88961,251048,162016) : difference with theory (-161) = -90 CORRECTING DEFECT 62 (vertices=32, convex hull=37, v0=35479) After retessellation of defect 62 (v0=35479), euler #=-70 (88964,251070,162036) : difference with theory (-160) = -90 CORRECTING DEFECT 63 (vertices=7, convex hull=27, v0=36232) After retessellation of defect 63 (v0=36232), euler #=-69 (88965,251079,162045) : difference with theory (-159) = -90 CORRECTING DEFECT 64 (vertices=50, convex hull=68, v0=36391) After retessellation of defect 64 (v0=36391), euler #=-68 (88981,251160,162111) : difference with theory (-158) = -90 CORRECTING DEFECT 65 (vertices=836, convex hull=244, v0=36489) After retessellation of defect 65 (v0=36489), euler #=-67 (89067,251545,162411) : difference with theory (-157) = -90 CORRECTING DEFECT 66 (vertices=31, convex hull=29, v0=37111) After retessellation of defect 66 (v0=37111), euler #=-66 (89071,251570,162433) : difference with theory (-156) = -90 CORRECTING DEFECT 67 (vertices=56, convex hull=53, v0=37653) After retessellation of defect 67 (v0=37653), euler #=-65 (89088,251641,162488) : difference with theory (-155) = -90 CORRECTING DEFECT 68 (vertices=39, convex hull=60, v0=38611) After retessellation of defect 68 (v0=38611), euler #=-64 (89101,251707,162542) : difference with theory (-154) = -90 CORRECTING DEFECT 69 (vertices=25, convex hull=27, v0=38623) After retessellation of defect 69 (v0=38623), euler #=-63 (89106,251732,162563) : difference with theory (-153) = -90 CORRECTING DEFECT 70 (vertices=240, convex hull=183, v0=39366) After retessellation of defect 70 (v0=39366), euler #=-62 (89152,251956,162742) : difference with theory (-152) = -90 CORRECTING DEFECT 71 (vertices=52, convex hull=40, v0=40688) After retessellation of defect 71 (v0=40688), euler #=-61 (89159,251992,162772) : difference with theory (-151) = -90 CORRECTING DEFECT 72 (vertices=124, convex hull=38, v0=41023) After retessellation of defect 72 (v0=41023), euler #=-60 (89174,252050,162816) : difference with theory (-150) = -90 CORRECTING DEFECT 73 (vertices=11, convex hull=29, v0=41071) After retessellation of defect 73 (v0=41071), euler #=-59 (89175,252061,162827) : difference with theory (-149) = -90 CORRECTING DEFECT 74 (vertices=51, convex hull=27, v0=41768) After retessellation of defect 74 (v0=41768), euler #=-58 (89178,252076,162840) : difference with theory (-148) = -90 CORRECTING DEFECT 75 (vertices=7, convex hull=24, v0=42520) After retessellation of defect 75 (v0=42520), euler #=-57 (89180,252090,162853) : difference with theory (-147) = -90 CORRECTING DEFECT 76 (vertices=5, convex hull=15, v0=43483) After retessellation of defect 76 (v0=43483), euler #=-56 (89181,252097,162860) : difference with theory (-146) = -90 CORRECTING DEFECT 77 (vertices=16, convex hull=18, v0=44383) After retessellation of defect 77 (v0=44383), euler #=-55 (89182,252103,162866) : difference with theory (-145) = -90 CORRECTING DEFECT 78 (vertices=96, convex hull=90, v0=45003) After retessellation of defect 78 (v0=45003), euler #=-54 (89235,252296,163007) : difference with theory (-144) = -90 CORRECTING DEFECT 79 (vertices=13, convex hull=26, v0=45448) After retessellation of defect 79 (v0=45448), euler #=-53 (89237,252308,163018) : difference with theory (-143) = -90 CORRECTING DEFECT 80 (vertices=83, convex hull=87, v0=45748) After retessellation of defect 80 (v0=45748), euler #=-51 (89262,252421,163108) : difference with theory (-142) = -91 CORRECTING DEFECT 81 (vertices=233, convex hull=175, v0=46166) After retessellation of defect 81 (v0=46166), euler #=-50 (89359,252798,163389) : difference with theory (-141) = -91 CORRECTING DEFECT 82 (vertices=163, convex hull=138, v0=46319) After retessellation of defect 82 (v0=46319), euler #=-50 (89443,253115,163622) : difference with theory (-140) = -90 CORRECTING DEFECT 83 (vertices=37, convex hull=24, v0=46379) After retessellation of defect 83 (v0=46379), euler #=-49 (89446,253132,163637) : difference with theory (-139) = -90 CORRECTING DEFECT 84 (vertices=51, convex hull=33, v0=49380) After retessellation of defect 84 (v0=49380), euler #=-48 (89449,253150,163653) : difference with theory (-138) = -90 CORRECTING DEFECT 85 (vertices=9, convex hull=17, v0=49419) After retessellation of defect 85 (v0=49419), euler #=-47 (89449,253153,163657) : difference with theory (-137) = -90 CORRECTING DEFECT 86 (vertices=53, convex hull=23, v0=50323) After retessellation of defect 86 (v0=50323), euler #=-46 (89452,253168,163670) : difference with theory (-136) = -90 CORRECTING DEFECT 87 (vertices=35, convex hull=74, v0=51862) After retessellation of defect 87 (v0=51862), euler #=-45 (89468,253243,163730) : difference with theory (-135) = -90 CORRECTING DEFECT 88 (vertices=3321, convex hull=1096, v0=52083) XL defect detected... After retessellation of defect 88 (v0=52083), euler #=-49 (90496,256990,166445) : difference with theory (-134) = -85 CORRECTING DEFECT 89 (vertices=217, convex hull=167, v0=52564) After retessellation of defect 89 (v0=52564), euler #=-49 (90568,257290,166673) : difference with theory (-133) = -84 CORRECTING DEFECT 90 (vertices=14, convex hull=25, v0=53577) After retessellation of defect 90 (v0=53577), euler #=-48 (90570,257304,166686) : difference with theory (-132) = -84 CORRECTING DEFECT 91 (vertices=240, convex hull=80, v0=54262) After retessellation of defect 91 (v0=54262), euler #=-47 (90582,257373,166744) : difference with theory (-131) = -84 CORRECTING DEFECT 92 (vertices=199, convex hull=197, v0=54739) After retessellation of defect 92 (v0=54739), euler #=-45 (90646,257664,166973) : difference with theory (-130) = -85 CORRECTING DEFECT 93 (vertices=2714, convex hull=1633, v0=55009) XL defect detected... After retessellation of defect 93 (v0=55009), euler #=-49 (91441,261035,169545) : difference with theory (-129) = -80 CORRECTING DEFECT 94 (vertices=15, convex hull=21, v0=55337) After retessellation of defect 94 (v0=55337), euler #=-48 (91442,261045,169555) : difference with theory (-128) = -80 CORRECTING DEFECT 95 (vertices=21, convex hull=68, v0=55427) After retessellation of defect 95 (v0=55427), euler #=-47 (91456,261111,169608) : difference with theory (-127) = -80 CORRECTING DEFECT 96 (vertices=132, convex hull=101, v0=55507) After retessellation of defect 96 (v0=55507), euler #=-46 (91515,261339,169778) : difference with theory (-126) = -80 CORRECTING DEFECT 97 (vertices=31, convex hull=78, v0=55649) After retessellation of defect 97 (v0=55649), euler #=-45 (91533,261422,169844) : difference with theory (-125) = -80 CORRECTING DEFECT 98 (vertices=26, convex hull=33, v0=57830) After retessellation of defect 98 (v0=57830), euler #=-44 (91536,261442,169862) : difference with theory (-124) = -80 CORRECTING DEFECT 99 (vertices=48, convex hull=25, v0=59288) After retessellation of defect 99 (v0=59288), euler #=-43 (91539,261456,169874) : difference with theory (-123) = -80 CORRECTING DEFECT 100 (vertices=69, convex hull=29, v0=59401) After retessellation of defect 100 (v0=59401), euler #=-42 (91546,261485,169897) : difference with theory (-122) = -80 CORRECTING DEFECT 101 (vertices=796, convex hull=246, v0=59818) After retessellation of defect 101 (v0=59818), euler #=-43 (91756,262244,170445) : difference with theory (-121) = -78 CORRECTING DEFECT 102 (vertices=26, convex hull=26, v0=60210) After retessellation of defect 102 (v0=60210), euler #=-42 (91762,262270,170466) : difference with theory (-120) = -78 CORRECTING DEFECT 103 (vertices=14, convex hull=23, v0=60932) After retessellation of defect 103 (v0=60932), euler #=-41 (91764,262282,170477) : difference with theory (-119) = -78 CORRECTING DEFECT 104 (vertices=81, convex hull=97, v0=63262) After retessellation of defect 104 (v0=63262), euler #=-40 (91775,262357,170542) : difference with theory (-118) = -78 CORRECTING DEFECT 105 (vertices=36, convex hull=62, v0=63840) After retessellation of defect 105 (v0=63840), euler #=-39 (91793,262438,170606) : difference with theory (-117) = -78 CORRECTING DEFECT 106 (vertices=23, convex hull=15, v0=64912) After retessellation of defect 106 (v0=64912), euler #=-38 (91794,262443,170611) : difference with theory (-116) = -78 CORRECTING DEFECT 107 (vertices=30, convex hull=21, v0=65471) After retessellation of defect 107 (v0=65471), euler #=-37 (91797,262455,170621) : difference with theory (-115) = -78 CORRECTING DEFECT 108 (vertices=922, convex hull=561, v0=65511) XL defect detected... After retessellation of defect 108 (v0=65511), euler #=-35 (92107,263690,171548) : difference with theory (-114) = -79 CORRECTING DEFECT 109 (vertices=26, convex hull=35, v0=65556) After retessellation of defect 109 (v0=65556), euler #=-34 (92111,263717,171572) : difference with theory (-113) = -79 CORRECTING DEFECT 110 (vertices=269, convex hull=181, v0=66333) After retessellation of defect 110 (v0=66333), euler #=-33 (92189,264038,171816) : difference with theory (-112) = -79 CORRECTING DEFECT 111 (vertices=164, convex hull=89, v0=67393) After retessellation of defect 111 (v0=67393), euler #=-32 (92244,264241,171965) : difference with theory (-111) = -79 CORRECTING DEFECT 112 (vertices=126, convex hull=123, v0=68188) After retessellation of defect 112 (v0=68188), euler #=-31 (92273,264389,172085) : difference with theory (-110) = -79 CORRECTING DEFECT 113 (vertices=200, convex hull=154, v0=68476) After retessellation of defect 113 (v0=68476), euler #=-30 (92330,264636,172276) : difference with theory (-109) = -79 CORRECTING DEFECT 114 (vertices=50, convex hull=51, v0=68586) After retessellation of defect 114 (v0=68586), euler #=-29 (92340,264688,172319) : difference with theory (-108) = -79 CORRECTING DEFECT 115 (vertices=26, convex hull=56, v0=68692) After retessellation of defect 115 (v0=68692), euler #=-28 (92358,264763,172377) : difference with theory (-107) = -79 CORRECTING DEFECT 116 (vertices=25, convex hull=59, v0=69495) After retessellation of defect 116 (v0=69495), euler #=-27 (92372,264825,172426) : difference with theory (-106) = -79 CORRECTING DEFECT 117 (vertices=39, convex hull=21, v0=69805) After retessellation of defect 117 (v0=69805), euler #=-26 (92374,264838,172438) : difference with theory (-105) = -79 CORRECTING DEFECT 118 (vertices=519, convex hull=259, v0=70275) After retessellation of defect 118 (v0=70275), euler #=-24 (92444,265180,172712) : difference with theory (-104) = -80 CORRECTING DEFECT 119 (vertices=34, convex hull=51, v0=70847) After retessellation of defect 119 (v0=70847), euler #=-23 (92458,265240,172759) : difference with theory (-103) = -80 CORRECTING DEFECT 120 (vertices=33, convex hull=48, v0=70876) After retessellation of defect 120 (v0=70876), euler #=-22 (92467,265286,172797) : difference with theory (-102) = -80 CORRECTING DEFECT 121 (vertices=9, convex hull=17, v0=72540) After retessellation of defect 121 (v0=72540), euler #=-21 (92467,265289,172801) : difference with theory (-101) = -80 CORRECTING DEFECT 122 (vertices=6, convex hull=15, v0=73786) After retessellation of defect 122 (v0=73786), euler #=-20 (92468,265295,172807) : difference with theory (-100) = -80 CORRECTING DEFECT 123 (vertices=13, convex hull=25, v0=73851) After retessellation of defect 123 (v0=73851), euler #=-19 (92468,265304,172817) : difference with theory (-99) = -80 CORRECTING DEFECT 124 (vertices=990, convex hull=442, v0=75236) L defect detected... After retessellation of defect 124 (v0=75236), euler #=-21 (92753,266407,173633) : difference with theory (-98) = -77 CORRECTING DEFECT 125 (vertices=15, convex hull=15, v0=75929) After retessellation of defect 125 (v0=75929), euler #=-20 (92755,266418,173643) : difference with theory (-97) = -77 CORRECTING DEFECT 126 (vertices=22, convex hull=54, v0=76638) After retessellation of defect 126 (v0=76638), euler #=-19 (92768,266477,173690) : difference with theory (-96) = -77 CORRECTING DEFECT 127 (vertices=54, convex hull=72, v0=76721) After retessellation of defect 127 (v0=76721), euler #=-18 (92784,266565,173763) : difference with theory (-95) = -77 CORRECTING DEFECT 128 (vertices=5, convex hull=29, v0=77836) After retessellation of defect 128 (v0=77836), euler #=-17 (92784,266570,173769) : difference with theory (-94) = -77 CORRECTING DEFECT 129 (vertices=15, convex hull=23, v0=78431) After retessellation of defect 129 (v0=78431), euler #=-16 (92788,266589,173785) : difference with theory (-93) = -77 CORRECTING DEFECT 130 (vertices=9, convex hull=8, v0=78707) After retessellation of defect 130 (v0=78707), euler #=-15 (92788,266590,173787) : difference with theory (-92) = -77 CORRECTING DEFECT 131 (vertices=93, convex hull=79, v0=80716) After retessellation of defect 131 (v0=80716), euler #=-14 (92827,266740,173899) : difference with theory (-91) = -77 CORRECTING DEFECT 132 (vertices=8, convex hull=22, v0=81711) After retessellation of defect 132 (v0=81711), euler #=-13 (92828,266749,173908) : difference with theory (-90) = -77 CORRECTING DEFECT 133 (vertices=52, convex hull=45, v0=82045) After retessellation of defect 133 (v0=82045), euler #=-12 (92834,266791,173945) : difference with theory (-89) = -77 CORRECTING DEFECT 134 (vertices=72, convex hull=46, v0=82963) After retessellation of defect 134 (v0=82963), euler #=-11 (92840,266833,173982) : difference with theory (-88) = -77 CORRECTING DEFECT 135 (vertices=7, convex hull=26, v0=85231) After retessellation of defect 135 (v0=85231), euler #=-10 (92841,266842,173991) : difference with theory (-87) = -77 CORRECTING DEFECT 136 (vertices=18, convex hull=19, v0=86385) After retessellation of defect 136 (v0=86385), euler #=-9 (92843,266853,174001) : difference with theory (-86) = -77 CORRECTING DEFECT 137 (vertices=5, convex hull=29, v0=87978) After retessellation of defect 137 (v0=87978), euler #=-8 (92844,266865,174013) : difference with theory (-85) = -77 CORRECTING DEFECT 138 (vertices=7, convex hull=17, v0=88214) After retessellation of defect 138 (v0=88214), euler #=-7 (92845,266872,174020) : difference with theory (-84) = -77 CORRECTING DEFECT 139 (vertices=9, convex hull=15, v0=89407) After retessellation of defect 139 (v0=89407), euler #=-6 (92845,266876,174025) : difference with theory (-83) = -77 CORRECTING DEFECT 140 (vertices=43, convex hull=33, v0=89458) After retessellation of defect 140 (v0=89458), euler #=-5 (92850,266906,174051) : difference with theory (-82) = -77 CORRECTING DEFECT 141 (vertices=18, convex hull=35, v0=90688) After retessellation of defect 141 (v0=90688), euler #=-4 (92852,266926,174070) : difference with theory (-81) = -77 CORRECTING DEFECT 142 (vertices=25, convex hull=57, v0=92260) After retessellation of defect 142 (v0=92260), euler #=-3 (92864,266987,174120) : difference with theory (-80) = -77 CORRECTING DEFECT 143 (vertices=21, convex hull=22, v0=92473) After retessellation of defect 143 (v0=92473), euler #=-2 (92870,267010,174138) : difference with theory (-79) = -77 CORRECTING DEFECT 144 (vertices=7, convex hull=22, v0=92538) After retessellation of defect 144 (v0=92538), euler #=-1 (92872,267022,174149) : difference with theory (-78) = -77 CORRECTING DEFECT 145 (vertices=59, convex hull=77, v0=94928) After retessellation of defect 145 (v0=94928), euler #=0 (92899,267139,174240) : difference with theory (-77) = -77 CORRECTING DEFECT 146 (vertices=224, convex hull=212, v0=94951) After retessellation of defect 146 (v0=94951), euler #=-2 (92989,267529,174538) : difference with theory (-76) = -74 CORRECTING DEFECT 147 (vertices=144, convex hull=129, v0=95230) After retessellation of defect 147 (v0=95230), euler #=-2 (93061,267815,174752) : difference with theory (-75) = -73 CORRECTING DEFECT 148 (vertices=26, convex hull=24, v0=96632) After retessellation of defect 148 (v0=96632), euler #=-1 (93063,267827,174763) : difference with theory (-74) = -73 CORRECTING DEFECT 149 (vertices=205, convex hull=149, v0=97473) After retessellation of defect 149 (v0=97473), euler #=0 (93107,268032,174925) : difference with theory (-73) = -73 CORRECTING DEFECT 150 (vertices=40, convex hull=81, v0=97629) After retessellation of defect 150 (v0=97629), euler #=1 (93125,268123,174999) : difference with theory (-72) = -73 CORRECTING DEFECT 151 (vertices=37, convex hull=20, v0=99020) After retessellation of defect 151 (v0=99020), euler #=2 (93129,268140,175013) : difference with theory (-71) = -73 CORRECTING DEFECT 152 (vertices=158, convex hull=101, v0=99350) After retessellation of defect 152 (v0=99350), euler #=4 (93183,268359,175180) : difference with theory (-70) = -74 CORRECTING DEFECT 153 (vertices=133, convex hull=82, v0=100095) After retessellation of defect 153 (v0=100095), euler #=4 (93217,268505,175292) : difference with theory (-69) = -73 CORRECTING DEFECT 154 (vertices=123, convex hull=145, v0=102811) After retessellation of defect 154 (v0=102811), euler #=6 (93244,268650,175412) : difference with theory (-68) = -74 CORRECTING DEFECT 155 (vertices=301, convex hull=219, v0=102976) After retessellation of defect 155 (v0=102976), euler #=7 (93290,268897,175614) : difference with theory (-67) = -74 CORRECTING DEFECT 156 (vertices=24, convex hull=18, v0=107421) After retessellation of defect 156 (v0=107421), euler #=8 (93291,268906,175623) : difference with theory (-66) = -74 CORRECTING DEFECT 157 (vertices=338, convex hull=278, v0=107446) After retessellation of defect 157 (v0=107446), euler #=8 (93346,269228,175890) : difference with theory (-65) = -73 CORRECTING DEFECT 158 (vertices=49, convex hull=74, v0=107897) After retessellation of defect 158 (v0=107897), euler #=9 (93361,269302,175950) : difference with theory (-64) = -73 CORRECTING DEFECT 159 (vertices=62, convex hull=72, v0=109712) After retessellation of defect 159 (v0=109712), euler #=11 (93379,269389,176021) : difference with theory (-63) = -74 CORRECTING DEFECT 160 (vertices=21, convex hull=52, v0=112030) After retessellation of defect 160 (v0=112030), euler #=12 (93388,269434,176058) : difference with theory (-62) = -74 CORRECTING DEFECT 161 (vertices=19, convex hull=24, v0=112696) After retessellation of defect 161 (v0=112696), euler #=13 (93392,269457,176078) : difference with theory (-61) = -74 CORRECTING DEFECT 162 (vertices=18, convex hull=14, v0=114284) After retessellation of defect 162 (v0=114284), euler #=14 (93393,269462,176083) : difference with theory (-60) = -74 CORRECTING DEFECT 163 (vertices=79, convex hull=65, v0=115466) After retessellation of defect 163 (v0=115466), euler #=15 (93404,269521,176132) : difference with theory (-59) = -74 CORRECTING DEFECT 164 (vertices=3809, convex hull=1107, v0=116275) XL defect detected... After retessellation of defect 164 (v0=116275), euler #=11 (94049,272135,178097) : difference with theory (-58) = -69 CORRECTING DEFECT 165 (vertices=23, convex hull=42, v0=116539) After retessellation of defect 165 (v0=116539), euler #=12 (94058,272175,178129) : difference with theory (-57) = -69 CORRECTING DEFECT 166 (vertices=528, convex hull=285, v0=116570) After retessellation of defect 166 (v0=116570), euler #=13 (94218,272799,178594) : difference with theory (-56) = -69 CORRECTING DEFECT 167 (vertices=63, convex hull=96, v0=116679) After retessellation of defect 167 (v0=116679), euler #=14 (94236,272897,178675) : difference with theory (-55) = -69 CORRECTING DEFECT 168 (vertices=582, convex hull=434, v0=117896) After retessellation of defect 168 (v0=117896), euler #=18 (94454,273783,179347) : difference with theory (-54) = -72 CORRECTING DEFECT 169 (vertices=66, convex hull=87, v0=118594) After retessellation of defect 169 (v0=118594), euler #=19 (94480,273893,179432) : difference with theory (-53) = -72 CORRECTING DEFECT 170 (vertices=20, convex hull=50, v0=119141) After retessellation of defect 170 (v0=119141), euler #=20 (94489,273936,179467) : difference with theory (-52) = -72 CORRECTING DEFECT 171 (vertices=44, convex hull=62, v0=122360) After retessellation of defect 171 (v0=122360), euler #=20 (94512,274034,179542) : difference with theory (-51) = -71 CORRECTING DEFECT 172 (vertices=145, convex hull=90, v0=123541) After retessellation of defect 172 (v0=123541), euler #=23 (94538,274156,179641) : difference with theory (-50) = -73 CORRECTING DEFECT 173 (vertices=521, convex hull=263, v0=123737) After retessellation of defect 173 (v0=123737), euler #=23 (94629,274563,179957) : difference with theory (-49) = -72 CORRECTING DEFECT 174 (vertices=110, convex hull=100, v0=123804) After retessellation of defect 174 (v0=123804), euler #=24 (94675,274749,180098) : difference with theory (-48) = -72 CORRECTING DEFECT 175 (vertices=24, convex hull=15, v0=124963) After retessellation of defect 175 (v0=124963), euler #=25 (94675,274752,180102) : difference with theory (-47) = -72 CORRECTING DEFECT 176 (vertices=10, convex hull=11, v0=125515) After retessellation of defect 176 (v0=125515), euler #=26 (94675,274754,180105) : difference with theory (-46) = -72 CORRECTING DEFECT 177 (vertices=45, convex hull=70, v0=126011) After retessellation of defect 177 (v0=126011), euler #=27 (94686,274813,180154) : difference with theory (-45) = -72 CORRECTING DEFECT 178 (vertices=45, convex hull=47, v0=128073) After retessellation of defect 178 (v0=128073), euler #=28 (94704,274883,180207) : difference with theory (-44) = -72 CORRECTING DEFECT 179 (vertices=51, convex hull=28, v0=129298) After retessellation of defect 179 (v0=129298), euler #=29 (94708,274901,180222) : difference with theory (-43) = -72 CORRECTING DEFECT 180 (vertices=11, convex hull=30, v0=129396) After retessellation of defect 180 (v0=129396), euler #=30 (94710,274915,180235) : difference with theory (-42) = -72 CORRECTING DEFECT 181 (vertices=37, convex hull=59, v0=129837) After retessellation of defect 181 (v0=129837), euler #=31 (94736,275015,180310) : difference with theory (-41) = -72 CORRECTING DEFECT 182 (vertices=1049, convex hull=546, v0=131710) XL defect detected... After retessellation of defect 182 (v0=131710), euler #=31 (94992,276113,181152) : difference with theory (-40) = -71 CORRECTING DEFECT 183 (vertices=42, convex hull=54, v0=132856) After retessellation of defect 183 (v0=132856), euler #=32 (95008,276184,181208) : difference with theory (-39) = -71 CORRECTING DEFECT 184 (vertices=323, convex hull=226, v0=135359) After retessellation of defect 184 (v0=135359), euler #=32 (95130,276679,181581) : difference with theory (-38) = -70 CORRECTING DEFECT 185 (vertices=14, convex hull=24, v0=136272) After retessellation of defect 185 (v0=136272), euler #=34 (95132,276694,181596) : difference with theory (-37) = -71 CORRECTING DEFECT 186 (vertices=485, convex hull=317, v0=137433) After retessellation of defect 186 (v0=137433), euler #=34 (95265,277276,182045) : difference with theory (-36) = -70 CORRECTING DEFECT 187 (vertices=84, convex hull=44, v0=139386) After retessellation of defect 187 (v0=139386), euler #=35 (95268,277300,182067) : difference with theory (-35) = -70 CORRECTING DEFECT 188 (vertices=43, convex hull=75, v0=140461) After retessellation of defect 188 (v0=140461), euler #=36 (95282,277368,182122) : difference with theory (-34) = -70 CORRECTING DEFECT 189 (vertices=18, convex hull=18, v0=140718) After retessellation of defect 189 (v0=140718), euler #=37 (95284,277380,182133) : difference with theory (-33) = -70 CORRECTING DEFECT 190 (vertices=58, convex hull=33, v0=141467) After retessellation of defect 190 (v0=141467), euler #=38 (95287,277402,182153) : difference with theory (-32) = -70 CORRECTING DEFECT 191 (vertices=336, convex hull=90, v0=141783) After retessellation of defect 191 (v0=141783), euler #=39 (95307,277503,182235) : difference with theory (-31) = -70 CORRECTING DEFECT 192 (vertices=42, convex hull=80, v0=142474) After retessellation of defect 192 (v0=142474), euler #=40 (95333,277614,182321) : difference with theory (-30) = -70 CORRECTING DEFECT 193 (vertices=8, convex hull=21, v0=144810) After retessellation of defect 193 (v0=144810), euler #=41 (95334,277622,182329) : difference with theory (-29) = -70 CORRECTING DEFECT 194 (vertices=29, convex hull=61, v0=146130) After retessellation of defect 194 (v0=146130), euler #=42 (95346,277679,182375) : difference with theory (-28) = -70 CORRECTING DEFECT 195 (vertices=32, convex hull=56, v0=146239) After retessellation of defect 195 (v0=146239), euler #=43 (95355,277727,182415) : difference with theory (-27) = -70 CORRECTING DEFECT 196 (vertices=8, convex hull=14, v0=146545) After retessellation of defect 196 (v0=146545), euler #=44 (95356,277735,182423) : difference with theory (-26) = -70 CORRECTING DEFECT 197 (vertices=8, convex hull=16, v0=149095) After retessellation of defect 197 (v0=149095), euler #=45 (95357,277742,182430) : difference with theory (-25) = -70 CORRECTING DEFECT 198 (vertices=19, convex hull=43, v0=149987) After retessellation of defect 198 (v0=149987), euler #=46 (95359,277760,182447) : difference with theory (-24) = -70 CORRECTING DEFECT 199 (vertices=56, convex hull=116, v0=150566) After retessellation of defect 199 (v0=150566), euler #=48 (95389,277905,182564) : difference with theory (-23) = -71 CORRECTING DEFECT 200 (vertices=152, convex hull=117, v0=150602) After retessellation of defect 200 (v0=150602), euler #=49 (95447,278135,182737) : difference with theory (-22) = -71 CORRECTING DEFECT 201 (vertices=22, convex hull=72, v0=150927) After retessellation of defect 201 (v0=150927), euler #=50 (95456,278189,182783) : difference with theory (-21) = -71 CORRECTING DEFECT 202 (vertices=97, convex hull=33, v0=151046) After retessellation of defect 202 (v0=151046), euler #=51 (95459,278210,182802) : difference with theory (-20) = -71 CORRECTING DEFECT 203 (vertices=48, convex hull=34, v0=152134) After retessellation of defect 203 (v0=152134), euler #=52 (95461,278229,182820) : difference with theory (-19) = -71 CORRECTING DEFECT 204 (vertices=11, convex hull=14, v0=152272) After retessellation of defect 204 (v0=152272), euler #=53 (95461,278233,182825) : difference with theory (-18) = -71 CORRECTING DEFECT 205 (vertices=57, convex hull=25, v0=152337) After retessellation of defect 205 (v0=152337), euler #=54 (95465,278255,182844) : difference with theory (-17) = -71 CORRECTING DEFECT 206 (vertices=194, convex hull=38, v0=153774) After retessellation of defect 206 (v0=153774), euler #=55 (95472,278294,182877) : difference with theory (-16) = -71 CORRECTING DEFECT 207 (vertices=15, convex hull=29, v0=154119) After retessellation of defect 207 (v0=154119), euler #=56 (95473,278308,182891) : difference with theory (-15) = -71 CORRECTING DEFECT 208 (vertices=26, convex hull=72, v0=154464) After retessellation of defect 208 (v0=154464), euler #=57 (95482,278361,182936) : difference with theory (-14) = -71 CORRECTING DEFECT 209 (vertices=36, convex hull=53, v0=154819) After retessellation of defect 209 (v0=154819), euler #=58 (95495,278421,182984) : difference with theory (-13) = -71 CORRECTING DEFECT 210 (vertices=38, convex hull=56, v0=155190) After retessellation of defect 210 (v0=155190), euler #=59 (95511,278486,183034) : difference with theory (-12) = -71 CORRECTING DEFECT 211 (vertices=129, convex hull=76, v0=155259) After retessellation of defect 211 (v0=155259), euler #=60 (95541,278603,183122) : difference with theory (-11) = -71 CORRECTING DEFECT 212 (vertices=51, convex hull=28, v0=155387) After retessellation of defect 212 (v0=155387), euler #=61 (95543,278616,183134) : difference with theory (-10) = -71 CORRECTING DEFECT 213 (vertices=20, convex hull=30, v0=155729) After retessellation of defect 213 (v0=155729), euler #=62 (95544,278630,183148) : difference with theory (-9) = -71 CORRECTING DEFECT 214 (vertices=40717, convex hull=11634, v0=155742) XL defect detected...