#!/bin/bash


subList=(Subj111)
targList=(s111_bla_8mm_orig2)
t1Dir="/data/jag/cnds/seda/TMSfMRI_T1s"
export SUBJECTS_DIR="/data/jag/cnds/seda/TMSfMRI_T1s/freesurfer"


for sub in ${subList[@]}; do
	cd ${SUBJECTS_DIR}

	for targ in ${targList[@]}; do 
		mris_sample_parc ${sub} \
			lh ${targ}.nii.gz \
			${targ}_annot.annot \
			-ct ${SUBJECTS_DIR}/${sub}/bla_test_table.txt

		mris_anatomical_stats -a ${SUBJECTS_DIR}/${sub}/label/lh.${targ}_annot.annot \
			-b ${sub} \
			lh

	done

done