Hi Doug,
I've attached the output from running fieldsign-sess.

Thanks for all your help.
Michelle

On Mon, Oct 3, 2011 at 12:59 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
Michelle, before you do that, can you run the offending program with -debug and send me the (copious) terminal output? Your anat should not have to be re-run.

doug

Michelle Umali wrote:
Hi Bruce,
Will this undo my wm and pial edits?

Thanks.
Michelle

On Sat, Oct 1, 2011 at 3:37 PM, Bruce Fischl <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>> wrote:

   try running


   recon-all  -s subject -make all

   and leave the -dontrun off. It should bring everything up to date

   Bruce



   On Sat, 1 Oct 2011, Michelle Umali wrote:

       Dear Freesurfers,
       I'm still getting a MRISripZeros() and MRIScopyMRI Surf/src
       mismatch error
       when running fieldsign-sess.  You suggested that this problem
       was due to the
       surfaces being out of synch.  When I ran  recon-all -s subject
       -make all
       -dontrun, I saw that several steps had not run.  The data
       looked alright and
       the number of vertices matched when I ran -vno-check.

       The mismatch error is still occurring, and I don't know how to
       proceed.

       Please suggest steps that I should take.

       Thanks.
       Michelle





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