I have  6 runs of DTI data per subject in a sample of 50, and I want to unpack the dicoms, so it outputs the bval bvec values, to use in dt_recon.

I realized I can use either dcm2nii or mri_convert to do this.

Could you please let me know what the command should be? and also should I do it separately for each run? subject’s scan info is attached.

I used the below command in dev environment but didn’t get any bval bvec values. 

mri_convert /${subj}/IMAGES/IM01113 /${subj}/DTI/IM_13.nii

Appreciate your help.

Mona

1            Localizer  ok  512 512  13   1 IM00269

  2      SagT2FLAIRSPACE  ok  512 512 176   1 IM00273

  3      SagT2FLAIRSPACE  ok  512 512 171   1 IM02084

  4 SagT1MPRAGE1mmiso_P3  ok  256 256 176   1 IM00449

  5      SagT2FLAIRSPACE  ok  512 512 227   1 IM02311

  6 SagT1MPRAGE1mmiso_P3  ok  256 256 171   1 IM02482

  7 SagT1MPRAGE1mmiso_P3  ok  256 256 239   1 IM02721

  8            AxWaveSWI  ok  288 252  88   1 IM00793

  9            AxWaveSWI  ok  288 252  88   1 IM00881

 10            AxWaveSWI  ok  288 252  81   1 IM00705

 11            AxWaveSWI  ok  288 252  88   1 IM00969