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For 1mm data, FS will generally run in 5-10 hours. Are you talking about high resolution data?

On 6/20/2023 10:11 AM, Michelle Diniz wrote:

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Hey guys. I'm using FMRIprep on the OASIS3 database and I've noticed that the processing time for each subject averages two days. 80% of that processing is due to the freesurfer. I will need to analyze many resonance images, more precisely the functional part. I tested SMRIprep and didn't get a significant improvement in processing time. How are you getting around this type of problem? How are they using freesurfer in a big dataset?

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Michelle Diniz Lopes

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