Hi Corinna,
try to open
/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz
in freeview to see if maybe the file is corrupted.
Best, Martin
On 04/25/2014 03:46 PM, Corinna Bauer wrote:
Hello,I still have plenty of space left on the drive
I am on the recon-all -long step of the longitudinal processing stream and the final time point exits with errors at the mri_convert stage.
mri_convert -at /home/Documents/longitudinal_morph/meta/test_subject_template/mri/transforms/test_subject_2ndpostop_to_test_subject_template.lta -odt uchar -rt cubic /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz /home/Documents/longitudinal_morph/meta/test_subject_2ndpostop.long.test_subject_template/mri/orig.mgz
mghRead(/home/Documents/longitudinal_morph/meta/test_subject_2ndpostop/mri/orig/001.mgz): could not read 262144 bytes at slice 4
total used free shared buffers cached
Mem: 16348132 14856524 1491608 0 534916 6193928
-/+ buffers/cache: 8127680 8220452
Swap: 16690172 573232 16116940
Any suggestions? The two previous timepoints finished without error.
Corinna
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-- Martin Reuter, Ph.D. Instructor in Neurology Harvard Medical School Assistant in Neuroscience Dept. of Radiology, Massachusetts General Hospital Dept. of Neurology, Massachusetts General Hospital Research Affiliate Computer Science and Artificial Intelligence Lab, Dept. of Electrical Engineering and Computer Science, Massachusetts Institute of Technology A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129 Phone: +1-617-724-5652 Email: mreuter@nmr.mgh.harvard.edu reuter@mit.edu Web : http://reuter.mit.edu
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