i want to convert the ".annot" files to nifti. When i used "mri_label2vol", I used this command
mri_label2vol --subject fsaverage --annot $FREESURFER_HOME/subjects/fsaverage/surf/lh.ic3.annot --o test.img --hemi lh --regheader $FREESURFER_HOME/subjects/fsaverage/mri/brain.mgz --temp $FREESURFER_HOME/subjects/fsaverage/mri/brain.mgz
But the error is:
Number of labels: 0
Annot File: /usr/local/freesurfer/subjects/fsaverage/surf/lh.ic3.annot
Template Volume: /usr/local/freesurfer/subjects/fsaverage/mri/brain.mgz
Outut Volume: test.img
Registration File: (null)
Fill Threshold: 0
Label Vox Vol: 1
ProjType: (null)
ProjTypeId: 0
ProjStart: 0
ProjStop: 0
ProjDelta: 0.1
Subject: fsaverage
Hemi: lh
UseNewASeg2Vol: 1
DoLabelStatVol 0
$Id: mri_label2vol.c,v 1.32 2009/10/22 23:35:53 greve Exp $
Template RAS-to-Vox: --------
-1.000 0.000 0.000 128.000;
-0.000 -0.000 -1.000 128.000;
-0.000 1.000 -0.000 128.000;
0.000 0.000 0.000 1.000;
Template Voxel Volume: 1
nHits Thresh: 0
Computing registration based on header
RegMat: --------
1.000 0.000 0.000 0.000;
0.000 1.000 0.000 0.000;
0.000 0.000 1.000 0.000;
0.000 0.000 0.000 1.000;
Label RAS-to-Vox: --------
-1.000 0.000 0.000 128.000;
0.000 0.000 -1.000 128.000;
0.000 1.000 0.000 128.000;
0.000 0.000 0.000 1.000;
INFO: loading surface /usr/local/freesurfer/subjects/fsaverage/surf/lh.white
nvertices = 163842
Reading thickness /usr/local/freesurfer/subjects/fsaverage/surf/lh.thickness
Loading annotations from /usr/local/freesurfer/subjects/fsaverage/surf/lh.ic3.annot
reading colortable from annotation file...
colortable with 642 entries read (originally /usr/local/freesurfer/lib/bem/ic3.tri)
annotidmax = 640
Allocating Hit Volume (-2147483648) voxels
MRIalloc(256, 256, 256): could not allocate 131072 bytes for 22494th slice
Cannot allocate memory
Does anyone know, why is that happening and how can I correct
it?
--
Good Luck
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Life Sciences Research Center
Xidian University
Xi'an China
http://life.xidian.edu.cn
liujixin@life.xidian.edu.cn
liujixin2010@gmail.com
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