Hi Doug,

Can I ask a basic question about mri_label2vol? in mri_label2vol, what should be the input for "--temp"? I understand it's supposed to be the template image. If it's the native space, should it be rawavg.mgz or orig.mgz for that individual?

Great thanks!

Best,
Daniel

-- 
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454

On 7/16/13 9:13 PM, "Douglas Greve" <greve@nmr.mgh.harvard.edu> wrote:


use

$FREESURFER_HOME/average/mni152.register.dat

doug

On 7/16/13 8:36 PM, Yang, Daniel wrote:
Dear FreeSurfer Experts,

I am interested in a specific ROI in the DK atlas, and I know that I can use tkregister2 to obtain a register.dat, and then mri_annotation2label + mri_label2vol to convert the annotation of the ROI to an .nii.gz.

However, it seems that the end product is in the TAL space? If yes, how can I convert it to the MNI 152 space?

Many thanks!!

Best,
Daniel
-- 
Yung-Jui "Daniel" Yang, PhD
Postdoctoral Researcher
Yale Child Study Center
New Haven, CT
(203) 737-5454


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