I am trying to import an MPRAGE structural sequence of 160 images acquired from a Siemens Allegro. Only one of my subjects displays the following error message when I try to import him using the &quot;recon-all -s Subject -i&quot; function. Below is the brief error message and full log. Thanks in advance for any assistance.  <div>
<br></div><div><div><b>ERROR: the pixel data cannot be loaded as it is JPEG compressed.</b></div></div><div><br></div><div><br></div><div>Full Log Below: </div><div><div>[Jill:freesurfer/subjects/RawDicoms] lab% recon-all -s SZ0069TS -i SZ0069TS/IM-0001-441581576-0001.dcm </div>
<div>Subject Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0</div><div>Current Stamp: freesurfer-Darwin-leopard-i686-stable-pub-v5.1.0</div><div>INFO: SUBJECTS_DIR is /Applications/freesurfer/subjects</div><div>Actual FREESURFER_HOME /Applications/freesurfer</div>
<div>Darwin Jill.local 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun  7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386</div><div>/Applications/freesurfer/subjects/SZ0069TS</div><div>\n mri_convert /Applications/freesurfer/subjects/RawDicoms/SZ0069TS/IM-0001-441581576-0001.dcm /Applications/freesurfer/subjects/SZ0069TS/mri/orig/001.mgz \n</div>
<div>mri_convert /Applications/freesurfer/subjects/RawDicoms/SZ0069TS/IM-0001-441581576-0001.dcm /Applications/freesurfer/subjects/SZ0069TS/mri/orig/001.mgz </div><div>$Id: mri_convert.c,v 1.179.2.2 2011/05/16 20:53:47 greve Exp $</div>
<div>reading from /Applications/freesurfer/subjects/RawDicoms/SZ0069TS/IM-0001-441581576-0001.dcm...</div><div>Getting Series No </div><div>INFO: Found 163 files in /Applications/freesurfer/subjects/RawDicoms/SZ0069TS</div>
<div>INFO: Scanning for Series Number 20</div><div>Scanning Directory </div><div>INFO: found 160 files in series</div><div>INFO: loading series header info.</div><div><br></div><div>RunNo = 19</div><div>INFO: sorting.</div>
<div>INFO: (256 256 160), nframes = 1, ismosaic=0</div><div>PE Dir ROW ROW</div><div>AutoAlign matrix detected </div><div>AutoAlign Matrix --------------------- </div><div> 1.000   0.000   0.000   0.000;</div><div> 0.000   1.000   0.000   0.000;</div>
<div> 0.000   0.000   1.000   0.000;</div><div> 0.000   0.000   0.000   1.000;</div><div><br></div><div><b>ERROR: the pixel data cannot be loaded as it is JPEG compressed.</b></div><div>       (Transfer Syntax UID: 1.2.840.10008.1.2.4.70)</div>
<div>Darwin Jill.local 10.8.0 Darwin Kernel Version 10.8.0: Tue Jun  7 16:33:36 PDT 2011; root:xnu-1504.15.3~1/RELEASE_I386 i386</div><div><br></div><div>recon-all -s SZ0069TS exited with ERRORS at Mon Jul 30 11:38:40 CDT 2012</div>
<div><br></div><div>For more details, see the log file /Applications/freesurfer/subjects/SZ0069TS/scripts/recon-all.log</div><div>To report a problem, see <a href="http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting">http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting</a></div>
</div><div><br></div><div><div><br></div><br>Take care, <br>Nathan Hutcheson<div>Graduate Research Assistant </div><div>501 Sparks Center</div><div>1748 7th Ave South</div><div>Birmingham, AL 35233</div><br>
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