Try it with -notal-check
doug

On 08/06/2014 04:39 PM, Francesco Deleo wrote:
> I all!
>
> I am a new freesurfer user.
> I have a problem when I perform the recon-all -all, in about 15% of
> MRI scans, all made with the same scanning protocol (T1 MPRAGE in a
> SIEMENS Avanto 1,5 T).
>
> I can't recognize any difference between those scans which work
> correctly and those not.
> I have never found the same error on 3T MRI scans.
>
> I've already tried to add these flags to the recon-all -all command:
> -use-mritotal
> -talairach -use-mritotal
> -notalairach
> but I've always received an error message
>
> Thank you very much
>
> ERROR: mpr2mni305 failed, see transforms/talairach_avi.log
> Darwin pro-di-villani.besta.local 13.3.0 Darwin Kernel Version 13.3.0:
> Tue Jun  3 21:27:35 PDT 2014; root:xnu-2422.110.17~1/RELEASE_X86_64 x86_64
>
> Thanks very much for your attention
>
> Francesco
> Milan, Italy
>
> ---------------------------------------------------------------------
>
> FREESURFER_HOME: /Applications/freesurfer
>
> Build stamp: freesurfer-Darwin-lion-stable-pub-v5.3.0
>
> Kernel info: Darwin 13.3.0 x86_64
>
> ---------------------------------------------------------------------
>
>
> LAST LINES IN TALAIRACH_AVI.LOG
>
> parameters
>     9.0270  134.9373  110.8627  -84.3566   -7.5458  -11.3475
> eta,q 0.95791  3.72402
>   0.0485  0.0470  0.0477  0.0513  0.0470  0.0452
>   0.0475  0.0471  0.0478  0.0513  0.0457  0.0435
>   0.0472  0.0472  0.0476  0.0428  0.0434  0.0415
>   0.0471  0.0471  0.0476  0.0435  0.0430  0.0415
>   0.0470  0.0478  0.0457  0.0525  0.0415  0.0430
>   0.0473  0.0511  0.0430  0.0548  0.0442  0.0453
>   0.0486  0.0426  0.0406  0.0672  0.0431  0.0503
> niter,ni,del,rscale     7    3   12.0000    1.2000
> imgrege: no voxels in register
> ERROR: 'imgreg_4dfp
> /Applications/freesurfer/average/711-2C_as_mni_average_305
> /Applications/freesurfer/average/711-2B_as_mni_average_305_mask
> talsrcimg_g11 none talsrcimg_to_711-2C_as_mni_average_305_t4 1283'
> failed! status=254
> ERROR: mpr2mni305 execution aborted
>
>

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--
Douglas N. Greve, Ph.D.
MGH-NMR Center
greve@nmr.mgh.harvard.edu
Phone Number: 617-724-2358
Fax: 617-726-7422

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