On Aug 20, 2023, at 14:57, Jacobs, Heidi I.,PHD <HJACOBS@mgh.harvard.edu> wrote:

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Hello FreeSurfer team,

 

I am trying to run the sclimbic tool on our FreeSurfer processed images (from the Martinos center).

For some unknown reason I keep getting the same problem:

Excluding seg [853]

Using CPU

Illegal instruction (core dumped)

 

Not sure what this means?
I have sourced /usr/local/freesurfer/nmr-dev-env  and set the SUBJECTS_DIR correctly.

I tried with the - - s option referring to the FreeSurfer processed subject as well as the - - i option, referring to the orig.mgz image.

Using the nifti image or the mgz image doesn’t make a difference either.

 

Any suggestions on what the problem may be or how to resolve this?

 

Thank you

All the best

Heidi

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