Hello,

I am kind of new to the neuroimaging. I was trying to reproduce the following type of figure in freesurfer (3d image with thickness). But I couldn’t do that. Is it possible for anyone to explain how to generate such figure from mri data. Just to clarify, I have the mri data in the form of *.dcm. Is there any specific command to get through it? I tried to work on similar figures using tksurfer *** but couldn’t produce.

Your help is greatly appreciated.

Thank you,

Hari

This figure is from one paper.

Fig. 4. 3D models of the pial surfaces generated by FreeSurfer with a colored overlay of the local cortical thickness in mm. The top row shows the pial surfaces of the left and right

hemisphere based on data with an isotropic resolution of 0.5 mm and the bottom row with an isotropic resolution of 1 mm; both data sets have been acquired at 7 T.