Hi FS experts,

I was trying to run "recon-all" within the VirtualBox of NeuroDebian 8.0 on a WIN8 host. The program stopped immaturely at the step of "mri_nu_correct.mni". I went into the folder of "mri" and ran "mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz" with the output pasted below. Could you please help me to fix this problem? Thank you very much!

-----------------------------------

brain:mri$ mri_nu_correct.mni --n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
/media/sf_host/SZU_ZL_3WAY/test/T1/FrSrfr_Recon/mri
/usr/local/freesurfer/bin/mri_nu_correct.mni
--n 1 --proto-iters 1000 --distance 50 --no-rescale --i orig.mgz --o orig_nu.mgz
nIters 1
$Id: mri_nu_correct.mni,v 1.18.2.1 2013/01/09 21:23:42 nicks Exp $
Linux neurodebian 3.16.0-4-amd64 #1 SMP Debian 3.16.7-ckt9-3~deb8u1 (2015-04-24) x86_64 GNU/Linux
Mon Aug  3 22:51:33 EDT 2015
Program nu_correct, built from:
Package MNI N3, version 1.10, compiled by nicks@minerva (x86_64-unknown-linux-gnu) on 2010-02-20 at 17:32:37
tmpdir is ./tmp.mri_nu_correct.mni.31236
/media/sf_host/SZU_ZL_3WAY/test/T1/FrSrfr_Recon/mri
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.31236/nu0.mnc -odt float
mri_convert orig.mgz ./tmp.mri_nu_correct.mni.31236/nu0.mnc -odt float
$Id: mri_convert.c,v 1.179.2.7 2012/09/05 21:55:16 mreuter Exp $
reading from orig.mgz...
TR=2530.00, TE=3.45, TI=1100.00, flip angle=7.00
i_ras = (-1, 0, 0)
j_ras = (0, 0, -1)
k_ras = (0, 1, 0)
changing data type from uchar to float (noscale = 0)...
writing to ./tmp.mri_nu_correct.mni.31236/nu0.mnc...
 
--------------------------------------------------------
Iteration 1 Mon Aug  3 22:51:38 EDT 2015
nu_correct -clobber ./tmp.mri_nu_correct.mni.31236/nu0.mnc ./tmp.mri_nu_correct.mni.31236/nu1.mnc -tmpdir ./tmp.mri_nu_correct.mni.31236/0/ -iterations 1000 -distance 50
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 165.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 170.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 211.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1051.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1054.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1449.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1455.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1457.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1481.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1631.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1633.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1635.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1637.
 (Maybe you should just omit the defined()?)
defined(@array) is deprecated at /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em line 1639.
 (Maybe you should just omit the defined()?)
[brain@neurodebian:/media/sf_host/SZU_ZL_3WAY/test/T1/FrSrfr_Recon/mri/] [2015-08-03 22:51:38] running:
  /usr/local/freesurfer/mni/bin/nu_estimate_np_and_em -parzen -log -sharpen 0.15 0.01 -iterations 1000 -stop 0.001 -shrink 4 -auto_mask -nonotify -b_spline 1 -distance 50 -quiet -execute -clobber -nokeeptmp -tmpdir ./tmp.mri_nu_correct.mni.31236/0/ ./tmp.mri_nu_correct.mni.31236/nu0.mnc ./tmp.mri_nu_correct.mni.31236/nu1.imp

Assertion failed at line 827 in file templates/CachedArray.cc
nu_estimate_np_and_em: crashed while running volume_stats (termination status=256)
nu_correct: crashed while running nu_estimate_np_and_em (termination status=256)
ERROR: nu_correct

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