Hi Melanie

can you cc the list so that others can answer?

thanks
Bruce
On Wed, 12 Feb 2014, Melanie Morrison wrote:

Thanks. I can just do this manually? Can I over lay this on my anatomical

map somehow so I can manually outline the correct boundaries.

> Date: Wed, 12 Feb 2014 11:51:14 -0500

> From: fischl@nmr.mgh.harvard.edu

> To: melanie.morrison@hotmail.com

> CC: freesurfer@nmr.mgh.harvard.edu; astevens@nmr.mgh.harvard.edu

> Subject: Re: [Freesurfer] How to avoid tumour from being segmented out

>

> Hi Melanie

>

> you should be able to fill it in in the wm.mgz volume in either tkmedit

> or freeview (using 255 if in freeview - tkmedit will do this by default)

>

> cheers

> Bruce

> On

> Wed, 12 Feb 2014, Melanie Morrison wrote:

>

> > Hi there,

> >

> > I am creating surfaces from my volume T1-weight scans so that I can run

them

> > in AFNI's SUMA program.

> > Problem is that my tumour has been segmented out because its intensity

and

> > the intensity of its surround area is much lower that what is being

> > segmented.

> >

> > How can I avoid this? Or edit this? I need my functional MRI data to be

> > displayed around the tumour region which is now unfortunately cut out.

> > (HELPP!!!)

> >

> > Thanks,

> > Melanie Morrison

> >

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