Date: Fri, 3 Sep 2010 09:36:35 -0400 (EDT)
From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
To: "Oya, Hiroyuki" <oyah@healthcare.uiowa.edu>
Subject: Re: [Freesurfer] Talairach afd error
In-Reply-To: <1283520819.2369.6.camel@hiroyuki-desktop>
Message-ID: <Pine.LNX.4.62.1009030936100.5592@gate.nmr.mgh.harvard.edu>
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	<Pine.LNX.4.62.1009030924110.5592@gate.nmr.mgh.harvard.edu>
	<1283520819.2369.6.camel@hiroyuki-desktop>
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can you post these to the list so others can answer? Did you check the 
talairach.xfm with either tkmedit or tkregister2?

On Fri, 3 Sep 2010, Oya, Hiroyuki wrote:

> Hi Bruce,
>
> Bringing up the image with tkmedit, directions are correct.
> And I have not done any process in Analyze format.
>
> Thank you.
>
>
>
>
>
> On Fri, 2010-09-03 at 09:24 -0400, Bruce Fischl wrote:
>
>> Hi Hiroyuki,
>>
>> can you check to make sure that the direction cosines are correct? Bring up
>> the orig.mgz and make sure that coronal is coronal, sagittal is sagittal
>> and horizontal is horizontal. Did this data go through analyze at any time?
>>
>> cheers
>> Bruce
>>
>>
>>   On Fri, 3 Sep 2010, Oya, Hiroyuki wrote:
>>
>>> Dear all,
>>>
>>>
>>> recon-all failed at the talairach stage.
>>>
>>>
>>> ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm
>>> ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050)
>>> Linux hiroyuki-desktop 2.6.32-24-generic #42-Ubuntu SMP Fri Aug 20
>>> 14:21:58 UTC 2010 x86_64 GNU/Linux
>>>
>>>
>>> In what circumstances do we see this?
>>> T1 STRUCTURAL looks OK . Any comment would be appreciated.
>>>
>>> Hiroyuki
>>>
>>>
>>>
>>>
>>>
>>
>>
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>
> //***********************//
> Hiroyuki Oya, M.D.
> Assistant Professor,
> Department of Neurosurgery,
> University of Iowa,
> 200 Hawkins drive, Iowa City,
> IA, 52242-1061, USA
> tel:1-319-353-8452
> e-mail: hiroyuki-oya@uiowa.edu
> fax:1-319-353-6605
>
>
>