Hi Kate,

You can see the instructions here: https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/project_to_individual

The gcs files will be incorporated into freesurfer at some point. Aihuiping (cc-ed) will attach the gcs files in the next email.

Thanks,

Thomas

On Wed, Jan 15, 2020 at 7:40 AM Kate Marvel <kmarvel54@gmail.com> wrote:

Dear Freesurfer team,

I would like to include Schaefer atlas into freesurfer. The Schaefer atlas can be found in the link below:

https://github.com/ThomasYeoLab/CBIG/tree/master/stable_projects/brain_parcellation/Schaefer2018_LocalGlobal/Parcellations/FreeSurfer5.3

My question is how can I integrate the atlas in the freesurfer so that I can run recon-all and calculate the statistics using Schaefer parcellations, just like aparc_DK40 or aparc_a2009s atlases already pre-installed in freesurfer

Thank you,

--

kate