Dear FreeSurfers,<br><br>After adding WMCP to a number of my subjects (which corrected the problem), I retrieved to cortical and subcortical volumes from my subjects using the &quot;aparcstats2table&quot;. I had used &quot;aparcstats2table&quot; before and after adding the control points.  Accurately, the regions I wanted to change, did change in volume.  However, the subcortical volumes post WMCP changed a lot as well?   Some regions changed more than 20% after adding WMCP to other regions?  Is this normal?  Should I go with the original &quot;subcortical&quot; segmentation volumes, or the new ones?   Is this part of the known bug in version 5.1.0 mentioned in the release notes about &quot;running recon-all&quot; a second time?  Please advise?<br>
<br>Sincerely ,<br>Mark Fletcher<br>