Hi,

The command line it's within the attached script, so it might not look as informative whn looked at on its own.  However it is:

mkanalysis-sess \
    -fsd bold \
    -funcstem $funcstem \
    -analysis $analysis \
    -paradigm $paradigm \
    -dt blocked \
    -sf sf \
    -df df \
    -force $tpef_string \
    -inorm \
    -timewindow ${timewindow} \
    -polyfit 2 \
    -TR $TR ${TER_string}\
    -gammafit $gammafit \
    -gammaexp $gammaexp \
    -nconditions $nconditions \
    -runlistfile $runlistfile \
    -mask ${mask_stem} \
    -taumax $taumax \
    -acfbins 1 \
    -fix-acf \
    -noautostimdur \
    -motioncor -mcextreg



On Fri, Feb 18, 2011 at 11:57 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu> wrote:
What is your command-line?

Pablo Polosecki wrote:
Hi,

I forgot to put the version, my bad. The version is 4.5.
Thanks,
Pablo

On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:

   which version are you using? The seq.info <http://seq.info> file

   has not been used in a long time.
   doug

   Pablo Polosecki wrote:

       Hi all,

       I am trying to define an analysis for a block-based functional
       scan using mkanalysis-sess.
       When I run it, I get the following output with an error message:

       Setting TER to .10000000000000000000
       /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
       ERROR: bad format for seq.info <http://seq.info>
       <http://seq.info> file,
       /home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy

       The seq.info <http://seq.info> <http://seq.info> file

       (attached) was produced by the unpacksdcmdir command and it
       looks no different from other ones I have seen. The
       information there seems correct to me.

       Could someone perhaps point out possible reasons why this
       could happen? The script I use to call mkanalysis-sess
       containing all the parameters used is attached.

       Thank you in advance.

       Pablo

       --         Pablo Polosecki
       Graduate Fellow
       Laboratory of Neural Systems
       The Rockefeller University
       1230 York Avenue, Box 9
       New York, NY 10065
       Tel: 212-327-7699 (Lab)
          917-842-2510 (Cell)
       email: ppolosecki@mail.rockefeller.edu
       <mailto:ppolosecki@mail.rockefeller.edu>
       <mailto:ppolosecki@mail.rockefeller.edu
       <mailto:ppolosecki@mail.rockefeller.edu>>

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   MGH-NMR Center
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MGH-NMR Center
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Phone Number: 617-724-2358 Fax: 617-726-7422

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