Hi,
The command line it's within the attached script, so it might not look as informative whn looked at on its own. However it is:
mkanalysis-sess \
-fsd bold \
-funcstem $funcstem \
-analysis $analysis \
-paradigm $paradigm \
-dt blocked \
-sf sf \
-df df \
-force $tpef_string \
-inorm \
-timewindow ${timewindow} \
-polyfit 2 \
-TR $TR ${TER_string}\
-gammafit $gammafit \
-gammaexp $gammaexp \
-nconditions $nconditions \
-runlistfile $runlistfile \
-mask ${mask_stem} \
-taumax $taumax \
-acfbins 1 \
-fix-acf \
-noautostimdur \
-motioncor -mcextreg
What is your command-line?
Pablo Polosecki wrote:
Hi,On Fri, Feb 18, 2011 at 11:21 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu>> wrote:
I forgot to put the version, my bad. The version is 4.5.
Thanks,
Pablo
which version are you using? The seq.info <http://seq.info> fileThe seq.info <http://seq.info> <http://seq.info> file
has not been used in a long time.
doug
Pablo Polosecki wrote:
Hi all,
I am trying to define an analysis for a block-based functional
scan using mkanalysis-sess.
When I run it, I get the following output with an error message:
Setting TER to .10000000000000000000
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
ERROR: bad format for seq.info <http://seq.info>
<http://seq.info> file,
/home/ppolosecki/space/data/ppolosecki/cooked/2011/110211Quincy
<mailto:Freesurfer@nmr.mgh.harvard.edu>
(attached) was produced by the unpacksdcmdir command and it
looks no different from other ones I have seen. The
information there seems correct to me.
Could someone perhaps point out possible reasons why this
could happen? The script I use to call mkanalysis-sess
containing all the parameters used is attached.
Thank you in advance.
Pablo
-- Pablo Polosecki
Graduate Fellow
Laboratory of Neural Systems
The Rockefeller University
1230 York Avenue, Box 9
New York, NY 10065
Tel: 212-327-7699 (Lab)
917-842-2510 (Cell)
email: ppolosecki@mail.rockefeller.edu
<mailto:ppolosecki@mail.rockefeller.edu>
<mailto:ppolosecki@mail.rockefeller.edu
<mailto:ppolosecki@mail.rockefeller.edu>>
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