Hi,<br><br>I am trying to do cortical segmentation. But unfortunately during autorecon2 stage, in some of the scans&nbsp; the orig surface did not include some of the wm, even though these regions are included in wm.mgz and so, the pial surface failed to include them as well.
<br><br>How to edit in this case? ( because this region is already there in wm.mgz ).<br><br>I have attached the brainmask &amp; wm.mgz.<br><br>Any suggestions greatly appreciated.<br><br>Thanks,<br>Preeti Ramasamy.<br>