Hi Anupa

it's pretty hard to figure anything out from your images. What is wrong with using the cutting plane tool? You specify 3 points to define the plane, then a 4th to specify which side you want to keep
cheers
Bruce
On Wed, 3 Apr 2013, Anupa AV wrote:

>
> ----- Forwarded Message -----
> From: Anupa AV <av.anupa@yahoo.com>
> To: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> Sent: Wednesday, April 3, 2013 11:57 AM
> Subject: Re: [Freesurfer] Making cuts using tksurfer
>
> Dear Sir,
>
> As you recommended, I have made a cut using plane option. Kindly see the
> attachment.
> My research interst is to make a coronal cut.
> I've done it by merging the standard FreeSurfer parcellation labels of the
> superior frontal gyrus, the rostral middle frontal gyrus and caudal
> middle frontal gyrus (after loading DKatlas).
> Then I cut the merged merged region using cut plane option.
> Now I want to make a coronal cut at Talairach coordinate y=26(say), so as to
> seperate dorsolateral prefrontal cortex from premotor cortex.
>
>
> Can you please tell me how to make a coronal cut at y=26?
>
> Thanks in advance for your response.
>
> ____________________________________________________________________________
> From: Bruce Fischl <fischl@nmr.mgh.harvard.edu>
> To: Anupa AV <av.anupa@yahoo.com>
> Cc: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
> Sent: Monday, April 1, 2013 6:15 PM
> Subject: Re: [Freesurfer] MAking cuts using tksurfer
>
> you might try using a cutting plane instead of having to draw the entire
> cut.
>
> cheers
> Bruce
> On Mon, 1 Apr 2013, Anupa AV wrote:
>
> > Dear All,
> >  
> > How to explore the "cut" tools in freesurfer using tksurfer?
> > I'd like to make a cut along the vertex on the cortical surface (say,
> inflated) to divide medial and lateral components.
> > How to do it after loading DKatlas labels and I want to cut along the
> vertex to divde medial and lateral components.?
> >
> > Thanks in advance for your response.
> >
> >
>
>
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